BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1901318	212 (0.710)	15 (0.060)	8/142	NT	6.6%	intergenic (‑314/‑209)	USA300HOU_RS09405/sdpR	hypothetical protein/Transcriptional repressor SdpR
*	?	USA300TCH1516_ALE	= 1901341	234 (0.880)	15 (0.060)	8/142	NT	6.6%	intergenic (‑337/‑186)	USA300HOU_RS09405/sdpR	hypothetical protein/Transcriptional repressor SdpR

Only 100 of 339 total aligned reads displayed.

TTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAA  >  USA300TCH1516_ALE/1901252‑1901431

ttAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTa                                                                                           >  2:4096308‑M2/1‑90 (MQ=255)

 tAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTaa                                                                                          >  1:4234322‑M2/1‑89 (MQ=255)

  aGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTaat                                                                                         <  1:1765604‑M2/91‑4 (MQ=255)

   gTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTaatc                                                                                        >  1:3895384‑M2/1‑87 (MQ=255)

   gTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGAGATGGCTaatc                                                                                        <  2:4670853‑M2/91‑5 (MQ=255)

     ggtAAAATCAAAGCTTCTTATTCAATACCCTTGATTACAAAAGAAATTCAACTAAGGTGATTGGCCATACACTCAGGATATGGCTaatcac                                                                                      >  2:4582645‑M2/2‑85 (MQ=255)

     cGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTaatcac                                                                                      >  1:4136544‑M2/1‑85 (MQ=255)

     cGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTaatcac                                                                                      <  1:3070505‑M2/91‑7 (MQ=255)

       tAAAAACAAAGCTTCTTAATCAATGCCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTaatcacct                                                                                    >  1:5542700‑M2/1‑83 (MQ=255)

       tAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTaatcacct                                                                                    >  1:1138678‑M2/1‑83 (MQ=255)

       tAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTaatcacct                                                                                    <  1:1190364‑M2/91‑9 (MQ=255)

         aaaaCAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCttt                                                                                  <  2:5059909/91‑1 (MQ=255)

          aaaCAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCtttt                                                                                 <  1:1984565/91‑1 (MQ=255)

          aaaCAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCtttt                                                                                 <  2:1318961/91‑1 (MQ=255)

           aaCAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCttttt                                                                                <  1:454560/91‑1 (MQ=255)

             cAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCa                                                                              >  1:2297981/1‑91 (MQ=255)

             cAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCa                                                                              >  2:3922707/1‑91 (MQ=255)

               aaGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAAt                                                                            >  1:692957/1‑91 (MQ=255)

               aaGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAAt                                                                            >  1:1013137/1‑91 (MQ=255)

                aGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATg                                                                           <  1:1690494/91‑1 (MQ=255)

                aGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATg                                                                           >  2:410981/1‑91 (MQ=255)

                    tcttAATCAGTACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGa                                                                       <  2:5560007/91‑1 (MQ=255)

                       tAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACa                                                                    >  1:5670521/1‑91 (MQ=255)

                       tAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACa                                                                    >  1:28608/1‑91 (MQ=255)

                           cAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAaga                                                                <  1:3308015/91‑1 (MQ=255)

                            aaTACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAagag                                                               <  2:2422063/91‑1 (MQ=255)

                             aTACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGt                                                              >  2:1702915/1‑91 (MQ=255)

                             aTACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGt                                                              <  1:4826796/91‑1 (MQ=255)

                              tACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGta                                                             >  2:623462/1‑91 (MQ=255)

                              tACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGta                                                             >  2:2625388/1‑91 (MQ=255)

                                cccTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGtata                                                           >  1:5133594/1‑91 (MQ=255)

                                 ccTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTatat                                                          >  2:1019494/1‑91 (MQ=255)

                                 ccTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTatat                                                          <  2:2932906/91‑1 (MQ=255)

                                 ccTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTatat                                                          >  1:1301130/1‑91 (MQ=255)

                                  cTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATAtt                                                         >  1:3724098/1‑91 (MQ=255)

                                  cTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATAtt                                                         <  2:847875/91‑1 (MQ=255)

                                   ttGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATAttt                                                        <  1:3819425/91‑1 (MQ=255)

                                    tGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATAtttt                                                       >  1:826624/1‑91 (MQ=255)

                                      aTTACAAGATAAGTGCAACTAAGGTGATTGGTCATAGACTAAAGAGATGGCTAATCGCCTTTTTCAATGAAGAACAAAGAGTATACTTTGc                                                     <  2:3121821/91‑1 (MQ=255)

                                       ttACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCa                                                    <  2:4355160/91‑1 (MQ=255)

                                        tACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCaa                                                   >  1:1445111/1‑91 (MQ=255)

                                        tACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCaa                                                   >  2:5339344/1‑91 (MQ=255)

                                        tACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCaa                                                   >  1:5698119/1‑91 (MQ=255)

                                        tACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCaa                                                   <  2:2874033/91‑1 (MQ=255)

                                         aCAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCaaa                                                  <  1:268968/91‑1 (MQ=255)

                                          cAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCaaaa                                                 >  2:900671/1‑91 (MQ=255)

                                          cAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCaaaa                                                 >  2:5633166/1‑91 (MQ=255)

                                           aaaaTAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAAt                                                >  2:2257808/1‑91 (MQ=255)

                                            aaataaatTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATc                                               <  1:4682535/91‑1 (MQ=255)

                                             aataaatTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCa                                              <  2:5670521/91‑1 (MQ=255)

                                               taaatTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAat                                            <  1:3113396/91‑1 (MQ=255)

                                                   ttCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCt                                        <  1:1235641/91‑1 (MQ=255)

                                                   ttCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCt                                        >  2:4924287/1‑91 (MQ=255)

                                                   ttCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCt                                        <  1:296409/91‑1 (MQ=255)

                                                   tacAACTAAGGTGATTGGCCATACACTCAAGTTATGGCTAATCACCTTTTTCAATGCATAACAACGAGTATACTTAGCAAAATCTatatgt                                        >  1:4897737/3‑89 (MQ=255)

                                                     cAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCtat                                      <  1:3361084/91‑1 (MQ=255)

                                                     cAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCtat                                      <  2:1176680/91‑1 (MQ=255)

                                                      aaCTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCtata                                     <  2:537609/91‑1 (MQ=255)

                                                       aCTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATaa                                    <  1:5609195/91‑1 (MQ=255)

                                                        cTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAAt                                   <  1:859514/91‑1 (MQ=255)

                                                           aGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTa                                >  1:75670/1‑91 (MQ=255)

                                                               gATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCtt                            >  1:2271546/1‑91 (MQ=255)

                                                               gATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCtt                            >  2:4418228/1‑91 (MQ=255)

                                                               gATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGAAAAATCCATATCTGTAATTTATCtt                            >  2:5832284/1‑91 (MQ=255)

                                                                aTTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCttt                           <  1:1096818/91‑1 (MQ=255)

                                                                aTTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCttt                           >  1:213295/1‑91 (MQ=255)

                                                                aTTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCttt                           >  2:359464/1‑91 (MQ=255)

                                                                 ttGGCCATACACTCAAGATATGGCTaatcaccttagttgaatttattttgtaatcaagggtattgattaagaagctttgtttttacgacta                          <  1:1507750‑M2/91‑67 (MQ=255)

                                                                 ttGGCCATACACTCAAGATATGGCTaatcaccttagttgaatttattttgtaatcaagggtattgattaagaagctttgtttttacgacta                          <  1:4746214‑M2/91‑67 (MQ=255)

                                                                 ttGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTa                          <  1:433675/91‑1 (MQ=255)

                                                                 ttGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTa                          <  1:2216754/91‑1 (MQ=255)

                                                                    gCCATACACTCAAGATATGGCTAATCACCTTTTTTTTTTTTTTTCAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATa                       >  2:1404982/1‑91 (MQ=255)

                                                                     ccATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATAc                      <  1:4081324/91‑1 (MQ=255)

                                                                      cATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATAcc                     <  1:3554917/91‑1 (MQ=255)

                                                                      cATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATAcc                     >  1:2518394/1‑91 (MQ=255)

                                                                        tACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCt                   >  1:5642441/1‑91 (MQ=255)

                                                                          cacTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCttt                 <  2:2081501/91‑1 (MQ=255)

                                                                          cacTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCttt                 <  2:1860074/91‑1 (MQ=255)

                                                                          cacTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCttt                 <  1:5288343/91‑1 (MQ=255)

                                                                          cacTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCttt                 >  2:2358464/1‑91 (MQ=255)

                                                                           acTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCtttt                <  2:3070505/91‑1 (MQ=255)

                                                                           acTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCtttt                >  2:337092/1‑91 (MQ=255)

                                                                           acTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCtttt                <  1:1434392/91‑1 (MQ=255)

                                                                            cTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTa               <  2:376354/91‑1 (MQ=255)

                                                                            cTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTa               <  2:3847319/91‑1 (MQ=255)

                                                                            cTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTa               <  1:5391917/91‑1 (MQ=255)

                                                                            cTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTa               <  2:5478936/91‑1 (MQ=255)

                                                                             tCAAGATATGGCTaatcaccttagttgaatttattttgtaatcaagggtattgattaagaagctttgtttttacgactaaaaatcataaat              <  1:714747‑M2/91‑79 (MQ=255)

                                                                             tCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTaa              >  1:4380845/1‑91 (MQ=255)

                                                                             tCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTaa              <  1:5067473/91‑1 (MQ=255)

                                                                                aGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATAc           <  2:1516947/91‑1 (MQ=255)

                                                                                aGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATAc           >  1:3976165/1‑91 (MQ=255)

                                                                                  atatGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTa         >  1:3014592/1‑91 (MQ=255)

                                                                                  atatGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTa         <  1:3491287/91‑1 (MQ=255)

                                                                                    atGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTaaa       >  2:4764441/1‑91 (MQ=255)

                                                                                    atGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTaaa       <  1:2476367/91‑1 (MQ=255)

                                                                                        ttaatctcattagttgaatttattttgtaatcaagggtattgattaagaagctttgtttttacgactaaaaatcataaatagaattactaa   >  1:2741696‑M2/2‑2 (MQ=255)

                                                                                        cTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCa   >  2:511934/1‑91 (MQ=255)

                                                                                        cTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCa   <  2:1741835/91‑1 (MQ=255)

                                                                                         tAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCaa  <  2:3422385/91‑1 (MQ=255)

TTAGTCGTAAAAACAAAGCTTCTTAATCAATACCCTTGATTACAAAATAAATTCAACTAAGGTGATTGGCCATACACTCAAGATATGGCTAATCACCTTTTTCAATGCAGAACAAAGAGTATATTTTGCAAAATCAATATCTATAATTTATCTTTAATACCCTTTTAATACTAAAACCAA  >  USA300TCH1516_ALE/1901252‑1901431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.