| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2087015 | 291 (0.970) | 20 (0.080) | 13/142 | NT | 6.8% | intergenic (‑166/‑519) | scn_3/chp | Staphylococcal complement inhibitor/Chemotaxis inhibitory protein |
| ? | USA300TCH1516_ALE | = 2087021 | 288 (1.090) | intergenic (‑172/‑513) | scn_3/chp | Staphylococcal complement inhibitor/Chemotaxis inhibitory protein | |||||
Only 100 of 383 total aligned reads displayed.
TAGATCTTCTTATTAAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGCCCGAAGGGGAGC > USA300TCH1516_ALE/2086931‑2087111 | taGATCTTCTTATTAAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGaaa > 2:2610079/1‑91 (MQ=255)taGATCTTCTTATTAAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGaaa > 1:1840631/1‑91 (MQ=255) tcttctTATTAAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAAtgct < 2:4652494‑M2/91‑5 (MQ=255) tcttctTATTAAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAAtgct > 1:1422847‑M2/1‑87 (MQ=255) tcttctTATTAAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAAtgct < 1:8843‑M2/91‑5 (MQ=255) tcttctTATTAAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAAtgct < 1:4204007‑M2/91‑5 (MQ=255) cttcttATTAAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAAtgctt > 1:5525188‑M2/1‑86 (MQ=255) ttcttATTAAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAAtgctta > 1:724538‑M2/1‑85 (MQ=255) tcttATTAAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAAtgcttac > 1:4916812‑M2/1‑84 (MQ=255) tcttATTAAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAAtgcttac < 2:352327‑M2/91‑8 (MQ=255) tttattaaATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAAtgcttacc > 1:5181861‑M2/2‑83 (MQ=255) attaAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTAc > 1:2047361/1‑91 (MQ=255) ttaAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACt < 2:554928/91‑1 (MQ=255) ttaAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACt < 1:2749205/91‑1 (MQ=255) ttaAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACt < 2:3311314/91‑1 (MQ=255) ttaAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACt < 1:1202099/91‑1 (MQ=255) aaaTGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTc > 1:4383549/1‑91 (MQ=255) aaaTGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTc > 2:2424611/1‑91 (MQ=255) aaTGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGGAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTcc < 2:3943643/91‑1 (MQ=255) aaTGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTAATTcc > 2:276992/1‑91 (MQ=255) aTGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTccc < 2:2480015/91‑1 (MQ=255) tGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAAtgctt < 2:5293114‑M2/79‑6 (MQ=255) tGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCa < 2:2338554/91‑1 (MQ=255) gAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCAt > 1:5394059/1‑91 (MQ=255) gAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCAt < 1:1600986/91‑1 (MQ=255) gAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAAAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCAt < 2:4804270/91‑1 (MQ=255) aaTTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATaaa > 1:2622680/1‑91 (MQ=255) aTTAATAAATTATCAAATTGACATACCTTATTGTAGTTATAGAAAAACAAAAAAAGGTAAGCATTTCGGtgcttacctttttttgtttttc > 2:5213030‑M2/1‑69 (MQ=255) taataaATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACaa < 2:5155771/91‑1 (MQ=255) ataaATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCAATAAACAata > 2:4703106/1‑91 (MQ=255) ataaATTATCAAATTAACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGCAAGCACCGAAATGCTTACCTACTTCCCATAAACaaaa > 2:4441950/1‑89 (MQ=255) taaATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAatat < 1:3261281/91‑1 (MQ=255) taaATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAatat > 2:3628498/1‑91 (MQ=255) taaATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAatat < 2:5062941/91‑1 (MQ=255) aaaTTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACatat > 1:3596181/1‑91 (MQ=255) aaTTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACAtata < 1:3888925/91‑1 (MQ=255) aaTTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACAtata < 1:464149/91‑1 (MQ=255) aaTTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACAtata < 1:63578/91‑1 (MQ=255) aaTTGACATACCTTATTGTATTTATAAAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACAtata < 2:359829/91‑1 (MQ=255) aTTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATAc < 2:1132573/91‑1 (MQ=255) ttGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACa > 1:96954/1‑91 (MQ=255) tGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACAt > 1:4435734/1‑91 (MQ=255) gACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCCAAATGCTTACCTACTTCCGATAAACAATATAACACATATACAtt < 2:5691120/91‑1 (MQ=255) aTACCTTGTTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGAt < 1:4672387/91‑1 (MQ=255) aTACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGAt > 2:882407/1‑91 (MQ=255) tACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACCTTGAtt > 2:5368741/1‑91 (MQ=255) tACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGAtt < 1:5761212/91‑1 (MQ=255) tACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGAtt > 2:2996800/1‑91 (MQ=255) tACCTGATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGAtt < 2:5469429/91‑1 (MQ=255) cTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTgg < 1:3671774/91‑1 (MQ=255) ttATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGa < 2:295609/91‑1 (MQ=255) aTTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGaaa > 1:2229205/1‑91 (MQ=255) aTTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGaaa > 1:1512403/1‑91 (MQ=255) tGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAgc > 2:3169613/1‑91 (MQ=255) gTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAgcg > 2:2290994/1‑91 (MQ=255) tATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAgcgc < 2:4546899/91‑1 (MQ=255) tATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAgcgc < 2:597923/91‑1 (MQ=255) tttATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCaa > 2:1347461/1‑91 (MQ=255) tttATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCaa > 2:2873/1‑91 (MQ=255) tttATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCaa > 1:2817744/1‑91 (MQ=255) ttATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCaaa < 1:5128546/91‑1 (MQ=255) ataGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCaaaaa < 1:1751461/91‑1 (MQ=255) ataGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCaaaaa < 1:352327/91‑1 (MQ=255) aaaaaCAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAaaataaa > 2:687960/1‑91 (MQ=255) aaaaCAAAAAAAGGTAAGCACCGAAATGCTTACCTACTGCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAaaataaat < 1:4841247/91‑1 (MQ=255) aaaCAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAAtt > 2:2010563/1‑91 (MQ=255) aaaCAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAAtt > 1:1001916/1‑91 (MQ=255) aaCAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAAttt > 2:3758480/1‑91 (MQ=255) aCAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTa > 2:5863915/1‑91 (MQ=255) aCAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTa > 2:4239920/1‑91 (MQ=255) cAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTaa < 1:1129168/91‑1 (MQ=255) aaaaaaaGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAat > 2:1254952/1‑91 (MQ=255) aaaaaaaGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAat > 1:2378294/1‑91 (MQ=255) aaaaaaGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAata > 2:2200750/1‑91 (MQ=255) aaaaaaGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAata > 1:4284332/1‑91 (MQ=255) aaaaaaGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAata > 1:2906197/1‑91 (MQ=255) aaaaGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAAtata > 1:5272582/1‑91 (MQ=255) aaaaGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAAtata > 2:1764588/1‑91 (MQ=255) aaaGGTAAGCACCGAGATGCTTGCCTACTTCCCATAAACAATATATCACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATAc < 2:5760262/91‑1 (MQ=255) aaGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACt > 1:1985910/1‑91 (MQ=255) ggTAAGCACCGAAAtgcttacctttttttgtttttctataaatacaataaggtatgtcaatttgataatttattaattttcatttaataaa < 2:1859711‑M2/91‑78 (MQ=255) ggTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAg < 2:4080667/91‑1 (MQ=255) ggTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAg < 1:2996800/91‑1 (MQ=255) gTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGc < 2:4748887/91‑1 (MQ=255) tAAGCACCGAAAtgcttacctttttttgtttttctataaatacaataaggtatgtcaatttgataatttattaattttcatttaataagaa < 2:526940‑M2/91‑80 (MQ=255) tAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGcc < 2:3071457/91‑1 (MQ=255) aaGCACCGAAAtgcttacctttttttgtttttctataaatacaataaggtatgtcaatttgataatttattaattttcatttaataagaag < 1:3332968‑M2/91‑81 (MQ=255) aaGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGccc > 2:1895390/1‑91 (MQ=255) aaGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGccc > 2:4182711/1‑91 (MQ=255) aaGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGccc > 2:81809/1‑91 (MQ=255) aGCACCGAAAtgcttacctttttttgtttttctataaatacaataaggtatgtcaatttgataatttattaattttcatttaataagaaga < 1:406412‑M2/91‑82 (MQ=255) aGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGCCCg < 2:4315004/91‑1 (MQ=255) aGCACCGAAATGCTTACCTACTTCACATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGCCCg > 1:5670537/1‑91 (MQ=255) gCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGCCCGa > 1:5567925/1‑91 (MQ=255) gCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGAGTTGGAAAGCGCAAAAATAAATTTAATATACTAGCCCGa < 1:1949749/91‑1 (MQ=255) cACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGCCCGaa < 1:2455665/91‑1 (MQ=255) aCCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGCCCGAAg > 2:2702078/1‑91 (MQ=255) ccGAAAtgcttacctttttttgtttttctataaatacaataaggtatgtcaatttgataatttattaattttcatttaataagaagatcta < 1:2097767‑M2/91‑86 (MQ=255) ccGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGCCCGAAgg < 1:5051298/91‑1 (MQ=255) aaaTGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGCCCGAAGGGGa < 2:3246689/91‑1 (MQ=255) | TAGATCTTCTTATTAAATGAAAATTAATAAATTATCAAATTGACATACCTTATTGTATTTATAGAAAAACAAAAAAAGGTAAGCACCGAAATGCTTACCTACTTCCCATAAACAATATAACACATATACATTGATTTGGAAAGCGCAAAAATAAATTTAATATACTAGCCCGAAGGGGAGC > USA300TCH1516_ALE/2086931‑2087111 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |