BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2473265 =	334 (1.120)	14 (0.060)	10/126	NT	5.5%	intergenic (+99/+131)	USA300HOU_RS12730/bcr_1	hypothetical protein/Bicyclomycin resistance protein
*	?	USA300TCH1516_ALE	2473309 =	218 (0.930)	14 (0.060)	10/126	NT	5.5%	intergenic (+143/+87)	USA300HOU_RS12730/bcr_1	hypothetical protein/Bicyclomycin resistance protein

Only 100 of 417 total aligned reads displayed.

AAACCAAATGGATAGATAATAGTACATATGTAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAATATAATAGAAGAAACTATGTTTATCAT  >  USA300TCH1516_ALE/2473219‑2473399

aaaCCAAATGGATAGATAATAGTACATATGTAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCatttttatt                                                                                            >  1:3898975/1‑91 (MQ=255)

aaaCCAAATGGATAGATAATAGTACATATGTAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCatttttatt                                                                                            >  2:2800605/1‑91 (MQ=255)

   ccAAATGGATAGATAATAGTACATATGTAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCatttttattttt                                                                                         >  1:258090/1‑91 (MQ=255)

   ccAAATGGATAGATAATAGTACATATGTAACGGTACTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCatttttattttt                                                                                         >  2:2883043/1‑91 (MQ=255)

     aaaTGGATAGATAATAGTACATATGTAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGa                                                                                       >  2:4081569/1‑91 (MQ=255)

       aTGGATAGATAATAGTACATATGTAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATg                                                                                     >  2:2092800/1‑91 (MQ=255)

       aTGGATAGATAATAGTACATATGTAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATg                                                                                     >  1:81527/1‑91 (MQ=255)

       aTGGATAGATAATAGTACATATGTAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATg                                                                                     <  2:1456875/91‑1 (MQ=255)

        tGGATAGATAATAGTACATATGTAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGc                                                                                    <  1:4198715/91‑1 (MQ=255)

         ggATAGATAATAGTACATATGTAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCt                                                                                   >  1:3686077/1‑91 (MQ=255)

         ggATAGATAATAGTACATATGTAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCt                                                                                   >  2:44340/1‑91 (MQ=255)

          gatagataATAGTACATATGTAACGGTGCTATCAATATAAAAATGTCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTa                                                                                  <  2:5668502/91‑1 (MQ=255)

            tagataATAGTACATATGTAACGGTGCTATCAATATGAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTaaa                                                                                <  1:3720931/91‑1 (MQ=255)

            tagataATAGTACATATGTAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTaaa                                                                                <  1:2405775/91‑1 (MQ=255)

            tagataATAGTACATATGTAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTaaa                                                                                <  2:1635755/91‑1 (MQ=255)

            tagataATAGTACATATGTAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTaaa                                                                                <  1:61859/91‑1 (MQ=255)

              aataataGTACATATGTAACGGTGCCATCAATATAAAAATGCCGAGGTTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAAtt                                                                              <  2:181220/90‑1 (MQ=255)

                    aGTACATATGTAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATacg                                                                        >  2:2610800/1‑89 (MQ=255)

                     gTACATATGTAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGt                                                                       >  2:3657695/1‑91 (MQ=255)

                      tACATATGTAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTc                                                                      <  1:576782/91‑1 (MQ=255)

                      tACATATGTAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTc                                                                      <  2:5509920/91‑1 (MQ=255)

                       gacctatgaatttagcatcaaaaataaaaatgccgagattattatgtggaaatctcggcatttttatTTTTGATGCTAAATTCATAGGTCt                                                                     >  1:352649‑M2/68‑91 (MQ=255)

                       aCATATGTAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCt                                                                     >  2:5792277/1‑91 (MQ=255)

                       aCATATGTAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCt                                                                     >  1:1660304/1‑91 (MQ=255)

                       aCATATGTAACGATGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCt                                                                     <  2:3888686/91‑1 (MQ=255)

                        cATATGTAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTa                                                                    >  2:1997432/1‑91 (MQ=255)

                          tatGTAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATg                                                                  >  2:426925/1‑91 (MQ=255)

                            tGTAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGaa                                                                >  2:3231152/1‑91 (MQ=255)

                            tGTAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGaa                                                                <  1:1737201/91‑1 (MQ=255)

                              tAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATa                                                              >  1:3235055/1‑91 (MQ=255)

                              tAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATa                                                              >  1:2475673/1‑91 (MQ=255)

                               aaCGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAg                                                             >  1:3443470/1‑91 (MQ=255)

                               aaCGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAg                                                             >  2:2123365/1‑91 (MQ=255)

                                aCGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGc                                                            <  1:4733695/91‑1 (MQ=255)

                                 cGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCt                                                           <  1:899098/91‑1 (MQ=255)

                                   gTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCa                                                         <  2:216064/91‑1 (MQ=255)

                                   gTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCa                                                         <  2:848244/91‑1 (MQ=255)

                                    tGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCaa                                                        >  1:5012488/1‑91 (MQ=255)

                                    tGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCaa                                                        <  2:1915947/91‑1 (MQ=255)

                                    tGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCaa                                                        <  2:369862/91‑1 (MQ=255)

                                    tGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCaa                                                        >  2:3530941/1‑91 (MQ=255)

                                     gCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAg                                                       >  1:3563499/1‑91 (MQ=255)

                                     gCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAg                                                       >  1:4579581/1‑91 (MQ=255)

                                      cTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAgt                                                      <  1:3026597/91‑1 (MQ=255)

                                       tATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAgtt                                                     >  2:4511584/1‑91 (MQ=255)

                                       tATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAgtt                                                     <  1:4107860/91‑1 (MQ=255)

                                        aTCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAgttt                                                    >  2:3104158/1‑91 (MQ=255)

                                          cAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAgttttg                                                  >  1:922035/1‑91 (MQ=255)

                                           aaTATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAgttttgt                                                 >  1:3847554/1‑91 (MQ=255)

                                            atatAAAAATGTCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAgttttgtt                                                <  2:5855467/91‑1 (MQ=255)

                                              ATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAgttttgtttt                                              >  2:2286831‑M1/1‑91 (MQ=255)

                                               TAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGttttt                                             <  1:5455162‑M1/91‑1 (MQ=255)

                                                AAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGtttttt                                            >  2:5611691‑M1/1‑91 (MQ=255)

                                                AAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGtttttt                                            <  1:1132390‑M1/91‑1 (MQ=255)

                                                   AATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAAt                                         >  1:5576617‑M1/1‑91 (MQ=255)

                                                   AATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTGTTGTTTTTTAAt                                         >  2:1519624‑M1/1‑91 (MQ=255)

                                                    ATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAAtt                                        >  2:2382921‑M1/1‑91 (MQ=255)

                                                    ATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAAtt                                        <  1:3376655‑M1/91‑1 (MQ=255)

                                                     TGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAAttt                                       >  2:3343099‑M1/1‑91 (MQ=255)

                                                      GCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAAtttt                                      <  2:3052432‑M1/91‑1 (MQ=255)

                                                      GCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAAtttt                                      >  1:2158309‑M1/1‑91 (MQ=255)

                                                      GCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAAtttt                                      >  1:1309418‑M1/1‑91 (MQ=255)

                                                       CCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAAttttt                                     >  2:1034871‑M1/1‑91 (MQ=255)

                                                       CCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGATCTACTAATATCTCACGTTTTGTTTTTTAtttttt                                     <  2:3547169‑M1/91‑1 (MQ=255)

                                                        CGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTttc                                    <  2:2204138‑M1/91‑1 (MQ=255)

                                                        CGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTttc                                    >  1:1944832‑M1/1‑91 (MQ=255)

                                                         GAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTttca                                   <  1:1016418‑M1/91‑1 (MQ=255)

                                                           GATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTttcaat                                 >  2:4581191‑M1/1‑91 (MQ=255)

                                                             TTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTttcaattc                               >  1:1803689‑M1/1‑91 (MQ=255)

                                                                ttatgtggaaatctcggcatttttatTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTtcaattcaat                            >  2:5561038‑M2/27‑91 (MQ=255)

                                                                ccACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTtcaattcaat                            <  1:1454173/91‑1 (MQ=255)

                                                                 tatgtggaaatctcggcatttttatTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAata                           >  2:4253993‑M2/26‑91 (MQ=255)

                                                                 cacaTAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTTTTTTTTATTTTTTTAATTCActa                           >  2:5168068/1‑91 (MQ=255)

                                                                 cacaTAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAata                           >  2:4829878/1‑91 (MQ=255)

                                                                  acaTAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAatat                          >  2:4983786/1‑91 (MQ=255)

                                                                    ataataATCTTGGCATTTTTATTTTTGATGCTAAATTCATATGTCTATGAATAGCTCAAGGTTTGTTTTTTAATTTTTCAATTCAATataa                        <  2:1720588/91‑1 (MQ=255)

                                                                     aaataatCTCGGCATTTTTATTTTTGATGCTAAATTCATATGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAATataat                       <  2:1401242/90‑1 (MQ=255)

                                                                      aataatCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAATataata                      <  2:4765376/91‑1 (MQ=255)

                                                                        taatCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAATATAATaga                    >  1:2843644/1‑91 (MQ=255)

                                                                          atctcggcatttttatTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAATATAATagaag                  <  1:4830169‑M2/75‑1 (MQ=255)

                                                                          atctcggcatttttatTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTG‑TTTTTAATTTTTCAATTCAATATAATagaaga                 >  2:2517098‑M2/17‑91 (MQ=255)

                                                                             tcggcatttttatTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAATATAATAGAAGaaa               >  2:2933292‑M2/14‑91 (MQ=255)

                                                                             tcggcatttttatTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAATATAATAGAAGaaa               >  1:96708‑M2/14‑91 (MQ=255)

                                                                             tcggcatttttatTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAATATAATAGAAGaaa               >  2:1543023‑M2/14‑91 (MQ=255)

                                                                              cggcatttttatTTTTGATGCTAAATTCATAGGTCTATTCATAGCTCAAGTTTTGTTTTTTCATTTTTCAATTCCATATAATAGAAGAAAc              >  1:1925858‑M2/13‑91 (MQ=255)

                                                                              cggcatttttatTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAATATAATAGAAGAAAc              >  2:4854626‑M2/13‑91 (MQ=255)

                                                                              cggcatttttatTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAATATAATAGAAGAAAc              <  1:3212869‑M2/79‑1 (MQ=255)

                                                                               ggcatttttatTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAATATAATAGAAGAAACt             >  2:5330502‑M2/12‑91 (MQ=255)

                                                                               ggcatttttatTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAATATAATAGAAGAAACt             <  1:3972395‑M2/80‑1 (MQ=255)

                                                                                gcatttttatTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAATATAATAGAAGAAACTa            <  1:5167851‑M2/81‑1 (MQ=255)

                                                                                 catttttatTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAATATAATAGAAGAAACTAt           >  1:1999716‑M2/10‑91 (MQ=255)

                                                                                   tttttatTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAATATAATAGAAGAAACTATGt         >  2:1226115‑M2/8‑91 (MQ=255)

                                                                                   tttttatTTTCGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAATATAATAGAAGAAACTATGt         <  2:4669931‑M2/84‑1 (MQ=255)

                                                                                     tttatTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAATATAATAGAAGAAACTATGttt       <  2:7101‑M2/86‑1 (MQ=255)

                                                                                      ttatTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAATATAATAGAAGAAACTATGTTTa      >  1:42882‑M2/5‑91 (MQ=255)

                                                                                       tatTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAATATAATAGAAGAAACTATGTTTAt     <  1:5261417‑M2/88‑1 (MQ=255)

                                                                                        atTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAATATAATAGAAGAAACTATGTTTATc    >  1:4408387‑M2/3‑91 (MQ=255)

                                                                                         tTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTTTTTTTTTTTTTCAATATAATAGAAGAAACTATGTTTATCa   >  2:4632612‑M2/2‑91 (MQ=255)

                                                                                         tTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAATATAATAGAAGAAACTATGTTTATCa   <  1:2712313‑M2/90‑1 (MQ=255)

                                                                                         tTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAATATAATAGAAGAAACTATGTTTATCa   >  1:1158947‑M2/2‑91 (MQ=255)

AAACCAAATGGATAGATAATAGTACATATGTAACGGTGCTATCAATATAAAAATGCCGAGATTTCCACATAATAATCTCGGCATTTTTATTTTTGATGCTAAATTCATAGGTCTATGAATAGCTCAAGTTTTGTTTTTTAATTTTTCAATTCAATATAATAGAAGAAACTATGTTTATCAT  >  USA300TCH1516_ALE/2473219‑2473399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.