BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	= 12620	97 (0.090)	10 (0.010)	5/148	NT	13.4%	coding (114/675 nt)	USA300HOU_pUSA300HOUMR0016	IS257 transposase
*	?	CP000731	= 12627	40 (0.040)	10 (0.010)	5/148	NT	13.4%	coding (121/675 nt)	USA300HOU_pUSA300HOUMR0016	IS257 transposase

Only 100 of 338 total aligned reads displayed.

AAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATT  >  CP000731/12537‑12717

aaGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTaa                                                                                            >  1:4142539/1‑91 (MQ=34)

aaGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTaa                                                                                            >  2:447348/1‑91 (MQ=33)

aaGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTaa                                                                                            <  1:2195458/91‑1 (MQ=34)

 aGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAa                                                                                           <  2:3646138‑M2/91‑2 (MQ=255)

 aGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAa                                                                                           >  2:3920011‑M2/1‑90 (MQ=255)

  ggATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAac                                                                                          <  1:251771‑M2/91‑3 (MQ=255)

   gATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAacg                                                                                         <  1:4871064‑M2/91‑4 (MQ=255)

   gATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAacg                                                                                         <  1:3683516‑M2/91‑4 (MQ=255)

   gATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAacg                                                                                         <  1:830946‑M2/91‑4 (MQ=255)

    aTGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAacgt                                                                                        >  2:5366344‑M2/1‑87 (MQ=255)

    aTGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAacgt                                                                                        <  1:4778224‑M2/91‑5 (MQ=255)

     tGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAacgtt                                                                                       >  2:3125895‑M2/1‑86 (MQ=255)

      gTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAacgttc                                                                                      >  1:2304431‑M2/1‑85 (MQ=255)

      gTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAacgttc                                                                                      <  1:733217‑M2/91‑7 (MQ=255)

      gTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAacgttc                                                                                      <  1:121791‑M2/91‑7 (MQ=255)

      gTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTAGCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAacgttc                                                                                      >  2:1393547‑M2/1‑85 (MQ=255)

      gTTATCACTGTAGCTCTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAacgttc                                                                                      >  2:4526461‑M2/1‑85 (MQ=255)

       ttATCGCTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtca                                                                                     <  1:763015/91‑1 (MQ=21)

       ttATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtca                                                                                     >  2:4959229/1‑91 (MQ=34)

       ttATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtca                                                                                     >  2:1721268/1‑91 (MQ=34)

        tATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtcat                                                                                    <  1:4400425/91‑1 (MQ=34)

        tATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtcat                                                                                    <  1:4197514/91‑1 (MQ=34)

        tATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtcat                                                                                    <  2:3794688/91‑1 (MQ=33)

        tATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtcat                                                                                    <  2:2875870/91‑1 (MQ=34)

        tATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtcat                                                                                    <  1:2393664/91‑1 (MQ=34)

        tATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtcat                                                                                    <  2:5129948/91‑1 (MQ=33)

         aTCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtcatc                                                                                   >  2:1951366/1‑91 (MQ=34)

         aTCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtcatc                                                                                   >  2:1075246/1‑91 (MQ=34)

         aTCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtcatc                                                                                   >  2:3979960/1‑91 (MQ=34)

          tCACTGTCGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtcatca                                                                                  <  1:4676774/91‑1 (MQ=21)

          tCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtcatca                                                                                  <  1:1561076/91‑1 (MQ=34)

          tCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtcatca                                                                                  >  1:1525799/1‑91 (MQ=34)

          tCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTtcatca                                                                                  <  1:146728/91‑1 (MQ=34)

           cACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTcatcat                                                                                 >  2:757357/1‑91 (MQ=34)

           cACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTcatcat                                                                                 <  2:4639962/91‑1 (MQ=34)

           cACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTcatcat                                                                                 <  1:993396/91‑1 (MQ=34)

           cACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTcatcat                                                                                 >  2:5629635/1‑91 (MQ=34)

            aCTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAac                                                                                          <  2:5810266‑M2/81‑3 (MQ=255)

            aCTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCAtt                                                                                >  2:1165612/1‑91 (MQ=33)

             cTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTC                                                                               <  1:3117782‑M1/91‑1 (MQ=255)

             cTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTC                                                                               >  1:5685586‑M1/1‑91 (MQ=255)

             cTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTC                                                                               <  2:1558213‑M1/91‑1 (MQ=255)

             cTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTC                                                                               >  1:2706258‑M1/1‑91 (MQ=255)

              tGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCA                                                                              <  2:4392262‑M1/91‑1 (MQ=255)

              tGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCA                                                                              <  2:202788‑M1/91‑1 (MQ=255)

               gTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAA                                                                             >  1:2927645‑M1/1‑91 (MQ=255)

               gTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAA                                                                             >  2:5223508‑M1/1‑91 (MQ=255)

               gTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAA                                                                             >  2:1888448‑M1/1‑91 (MQ=255)

               gTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAA                                                                             <  1:106482‑M1/91‑1 (MQ=255)

               gTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTAAA                                                                             >  2:1793148‑M1/1‑91 (MQ=255)

                  gccgttgGCTACTATCTAAGATATACATTGAGTTATCCTGATATATCTGAAATATTAAGGGAACGTGGTGTAAacgttcccttaatatttc                                                                          <  1:4478319‑M2/88‑19 (MQ=255)

                  gCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGG                                                                          >  1:2045961‑M1/1‑91 (MQ=255)

                  gCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGG                                                                          <  1:5504413‑M1/91‑1 (MQ=255)

                  gCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGG                                                                          <  1:3351851‑M1/91‑1 (MQ=255)

                  gCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGG                                                                          >  1:3902098‑M1/1‑91 (MQ=255)

                   cTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTACACGTTCATCATTCAACGGT                                                                         >  2:1289544‑M1/1‑91 (MQ=255)

                   cTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGT                                                                         >  2:4207965‑M1/1‑91 (MQ=255)

                   cTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGT                                                                         >  1:654220‑M1/1‑91 (MQ=255)

                   cTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGT                                                                         <  2:2919224‑M1/91‑1 (MQ=255)

                   cTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGT                                                                         <  2:2427391‑M1/91‑1 (MQ=255)

                    tGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTc                                                                        <  1:5364289/91‑1 (MQ=31)

                     gTTGGCTGCTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTag                                                                       <  1:4637319‑M1/91‑3 (MQ=255)

                     gTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTag                                                                       <  1:1911618‑M1/91‑3 (MQ=255)

                     gTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTag                                                                       <  2:3049256‑M1/91‑3 (MQ=255)

                     gTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTag                                                                       <  2:1784469‑M1/91‑3 (MQ=255)

                     gTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTag                                                                       <  2:5207471‑M1/91‑3 (MQ=255)

                      ttGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGCACGTGGTGTAAACGTTCATCATTCAACGGTaga                                                                      <  1:5827048‑M1/91‑4 (MQ=255)

                      ttGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTaga                                                                      <  2:2830136‑M1/91‑4 (MQ=255)

                      ttGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTaga                                                                      <  2:3269233‑M1/91‑4 (MQ=255)

                      ttGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTaga                                                                      <  1:1981557‑M1/91‑4 (MQ=255)

                       tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTagac                                                                     <  2:3412307‑M1/91‑5 (MQ=255)

                        ggCTACTATCTAAGATATACATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTagacc                                                                    <  2:3484508‑M1/91‑6 (MQ=255)

                         gCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTagaccg                                                                   <  1:3497755‑M1/91‑7 (MQ=255)

                         gCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTagaccg                                                                   <  2:570759‑M1/91‑7 (MQ=255)

                         gCTACTATCTAAGATATACATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTagaccg                                                                   <  1:2442542‑M1/91‑7 (MQ=255)

                          ctactaTCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTagaccgt                                                                  <  2:4815108‑M1/91‑8 (MQ=255)

                           tactaTCTAAGATATACATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTTTACACCacgttcccttaatatttcagatatatc                                                                 >  2:334973‑M2/1‑64 (MQ=255)

                           tactaTCTAAGATATACATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTagaccgtt                                                                 <  1:5860067‑M1/91‑9 (MQ=255)

                                      atatGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGG                                                                          <  2:5554407‑M1/71‑1 (MQ=255)

                                                                                    ggtgTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAg        >  1:4822329/1‑91 (MQ=32)

                                                                                    ggtgTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAg        >  1:4062608/1‑91 (MQ=32)

                                                                                    ggtgTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAg        >  2:1342757/1‑91 (MQ=32)

                                                                                     gtgtAAacgttcccttaatatttcagatatatcacgataactcaatgcatatcttagatagtagccaacagctacagtgataacatccttg       <  1:374890‑M2/91‑86 (MQ=255)

                                                                                     gtgtAAACGTTCATCATTCAACGGTctaccgttgaatgatgaacgtttacaccacgttcccttaatatttcagatatatcacgataactca       >  2:230261‑M1/1‑25 (MQ=255)

                                                                                      tgtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCACATTTGGAAGAAAAAGCATAAAAAAGCt      >  2:4789105/1‑91 (MQ=18)

                                                                                      tgtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCt      <  1:4982344/91‑1 (MQ=34)

                                                                                      tgtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATATGGAAGAAAAAGCATAAAAAAGCt      >  1:5555121/1‑91 (MQ=21)

                                                                                       gtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtt     <  1:1848906/91‑1 (MQ=34)

                                                                                       gtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtt     >  1:5044214/1‑91 (MQ=34)

                                                                                       gtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtt     <  2:2706258/91‑1 (MQ=33)

                                                                                       gtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtt     <  2:1214566/91‑1 (MQ=34)

                                                                                       gtAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtt     <  1:4464991/91‑1 (MQ=34)

                                                                                        tAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtta    >  1:3004263/1‑91 (MQ=34)

                                                                                        tAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCtta    <  2:2552823/91‑1 (MQ=33)

                                                                                         aaaCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttat   <  1:5781363/91‑1 (MQ=34)

                                                                                         aaaCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttat   <  1:1006046/91‑1 (MQ=34)

                                                                                          aaCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttatt  <  1:3268663/91‑1 (MQ=34)

                                                                                          aaCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttatt  <  1:3933983/91‑1 (MQ=34)

                                                                                          aaCGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttatt  >  1:5267144/1‑91 (MQ=33)

                                                                                          aaCGGTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCttatt  <  2:4113530/91‑1 (MQ=21)

AAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATT  >  CP000731/12537‑12717

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.