mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 394 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2863074 | 365 (1.220) | 7 (0.030) | 6/150 | NT | 2.0% | intergenic (+44/+16) | USA300TCH1516_02707/USA300HOU_RS14670 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2864026 | NA (NA) | intergenic (‑439/‑19) | USA300HOU_RS14670/USA300HOU_RS14675 | hypothetical protein/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | = 2854319 | 380 (1.270) | 6 (0.020) | 6/150 | NT | 1.6% | intergenic (+17/+396) | yflS/USA300HOU_RS14625 | Putative malate transporter YflS/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2854338 | 365 (1.310) | intergenic (+36/+377) | yflS/USA300HOU_RS14625 | Putative malate transporter YflS/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 2853465 = | 338 (1.130) | 4 (0.010) | 4/150 | NT | 1.3% | coding (582/1419 nt) | yflS | Putative malate transporter YflS |
| ? | USA300TCH1516_ALE | 2853490 = | 286 (1.020) | coding (607/1419 nt) | yflS | Putative malate transporter YflS | |||||
| * | ? | USA300TCH1516_ALE | = 2850830 | 240 (0.800) | 4 (0.020) | 4/132 | NT | 1.9% | intergenic (+29/+90) | pcp/USA300HOU_RS14605 | Pyrrolidone‑carboxylate peptidase/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2850851 | 208 (0.850) | intergenic (+50/+69) | pcp/USA300HOU_RS14605 | Pyrrolidone‑carboxylate peptidase/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 2850817 = | 242 (0.810) | 5 (0.020) | 4/132 | NT | 2.4% | intergenic (+16/+103) | pcp/USA300HOU_RS14605 | Pyrrolidone‑carboxylate peptidase/hypothetical protein |
| ? | USA300TCH1516_ALE | 2850866 = | 208 (0.850) | intergenic (+65/+54) | pcp/USA300HOU_RS14605 | Pyrrolidone‑carboxylate peptidase/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 2838577 = | 340 (1.140) | 4 (0.010) | 3/146 | NT | 1.4% | coding (660/1251 nt) | hisD | Histidinol dehydrogenase |
| ? | USA300TCH1516_ALE | 2838606 = | 257 (0.940) | coding (631/1251 nt) | hisD | Histidinol dehydrogenase | |||||
| * | ? | USA300TCH1516_ALE | 2825506 = | 300 (1.000) | 4 (0.010) | 4/148 | NT | 1.4% | intergenic (‑321/+527) | cap8A_2/icaR | Capsular polysaccharide type 8 biosynthesis protein cap8A/Biofilm operon icaADBC HTH‑type negative transcriptional regulator IcaR |
| ? | USA300TCH1516_ALE | 2825528 = | 274 (0.990) | intergenic (‑343/+505) | cap8A_2/icaR | Capsular polysaccharide type 8 biosynthesis protein cap8A/Biofilm operon icaADBC HTH‑type negative transcriptional regulator IcaR | |||||
| * | ? | USA300TCH1516_ALE | = 2818923 | 336 (1.130) | 6 (0.020) | 5/148 | NT | 1.9% | coding (643/693 nt) | USA300HOU_RS14425 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 2818942 | 321 (1.160) | coding (624/693 nt) | USA300HOU_RS14425 | hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | = 2787510 | 279 (0.930) | 5 (0.020) | 4/142 | NT | 1.7% | intergenic (+56/‑184) | zipA_3/manR_2 | Cell division protein ZipA/Transcriptional regulator ManR |
| ? | USA300TCH1516_ALE | = 2787537 | 323 (1.220) | intergenic (+83/‑157) | zipA_3/manR_2 | Cell division protein ZipA/Transcriptional regulator ManR | |||||
| * | ? | USA300TCH1516_ALE | = 2784159 | 301 (1.010) | 8 (0.030) | 6/134 | NT | 2.8% | intergenic (‑268/+99) | argR_3/aur | Arginine repressor/Zinc metalloproteinase aureolysin |
| ? | USA300TCH1516_ALE | = 2784173 | 312 (1.250) | intergenic (‑282/+85) | argR_3/aur | Arginine repressor/Zinc metalloproteinase aureolysin | |||||