mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000731 | 81 | N→G | 100% | intergenic (–/‑151) | – / → repA | –/replication protein A |
| JC | CP000731 | 6,552 | +28 bp | 100% | intergenic (+1069/‑419) | cadX → / → USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
| RA | CP000731 | 25,663 | Δ1 bp | 100% | coding (316/333 nt) | USA300HOU_pUSA300HOUMR0031 → | hypothetical protein |
| RA | USA300TCH1516_ALE | 9,710 | T→C | 5.1% | intergenic (+15/+72) | gyrA → / ← nnrD | DNA gyrase subunit A/ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase |
| RA | USA300TCH1516_ALE | 52,934 | G→A | 5.5% | intergenic (+544/‑129) | USA300HOU_RS00215 → / → USA300HOU_RS00220 | hypothetical protein/hypothetical protein |
| RA | USA300TCH1516_ALE | 99,276 | G→C | 5.1% | intergenic (+70/+2) | USA300HOU_RS00465 → / ← tetA_1 | hypothetical protein/Tetracycline resistance protein, class C |
| RA | USA300TCH1516_ALE | 110,660 | T→A | 7.9% | I173I (ATT→ATA) | USA300HOU_RS00515 → | putative lipoprotein |
| RA | USA300TCH1516_ALE | 111,512 | A→G | 32.1% | S194S (TCA→TCG) | USA300HOU_RS00520 → | putative lipoprotein |
| RA | USA300TCH1516_ALE | 111,516 | C→A | 30.5% | Q196K (CAA→AAA) | USA300HOU_RS00520 → | putative lipoprotein |
| RA | USA300TCH1516_ALE | 308,084 | C→T | 5.8% | A111V (GCA→GTA) | lytR_1 → | Sensory transduction protein LytR |
| RA | USA300TCH1516_ALE | 512,643 | A→G | 17.0% | intergenic (+711/‑6052) | recR → / → speA_2 | Recombination protein RecR/Arginine decarboxylase |
| RA | USA300TCH1516_ALE | 803,539 | A→G | 5.3% | intergenic (‑239/+31) | USA300HOU_RS03920 ← / ← dtpT | Putative lipid kinase/Di‑/tripeptide transporter |
| RA | USA300TCH1516_ALE | 937,158 | T→A | 5.5% | intergenic (+65/‑66) | USA300HOU_RS04665 → / → pepA_1 | NADH dehydrogenase‑like protein/Cytosol aminopeptidase |
| RA | USA300TCH1516_ALE | 1,107,417 | G→A | 5.8% | intergenic (+52/‑116) | pdhD → / → USA300HOU_RS05475 | Dihydrolipoyl dehydrogenase/hypothetical protein |
| RA | USA300TCH1516_ALE | 1,416,458 | A→T | 100% | I216N (ATT→AAT) | oppD_4 ← | Oligopeptide transport ATP‑binding protein OppD |
| RA | USA300TCH1516_ALE | 1,513,930 | A→T | 100% | L413F (TTA→TTT) | USA300HOU_RS07375 → | hypothetical protein |
| RA | USA300TCH1516_ALE | 1,646,189 | G→C | 100% | A155G (GCA→GGA) | ypdF ← | Aminopeptidase YpdF |
| RA | USA300TCH1516_ALE | 1,857,867 | C→T | 5.6% | L169L (TTG→TTA) | USA300HOU_RS09235 ← | hypothetical protein |
| RA | USA300TCH1516_ALE | 2,010,363 | C→T | 100% | C146Y (TGT→TAT) | USA300HOU_RS10125 ← | Putative multidrug export ATP‑binding/permease protein |
| RA | USA300TCH1516_ALE | 2,187,338 | C→T | 5.8% | G242D (GGT→GAT) | rsbU ← | Phosphoserine phosphatase RsbU |
| RA | USA300TCH1516_ALE | 2,187,722 | G→A | 7.3% | P114L (CCA→CTA) | rsbU ← | Phosphoserine phosphatase RsbU |
| RA | USA300TCH1516_ALE | 2,211,248 | A→T | 5.4% | intergenic (+241/+572) | USA300HOU_RS11275 → / ← yidC | hypothetical protein/Membrane protein insertase YidC |
| RA | USA300TCH1516_ALE | 2,279,705 | G→A | 100% | A943V (GCA→GTA) | ebh_3 ← | Extracellular matrix‑binding protein ebh |
| RA | USA300TCH1516_ALE | 2,372,413 | C→G | 7.3% | intergenic (+164/+28) | USA300TCH1516_02262 → / ← pbuG | hypothetical protein/Guanine/hypoxanthine permease PbuG |
| RA | USA300TCH1516_ALE | 2,372,419 | C→T | 7.3% | intergenic (+170/+22) | USA300TCH1516_02262 → / ← pbuG | hypothetical protein/Guanine/hypoxanthine permease PbuG |
| RA | USA300TCH1516_ALE | 2,532,298 | A→T | 100% | T15T (ACA→ACT) | femA_3 → | Aminoacyltransferase FemA |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | 34 = | 388 (0.370) | 25 (0.030) | 14/146 | NT | 5.1% | intergenic (–/‑198) | –/repA | –/replication protein A |
| ? | CP000731 | 65 = | 575 (0.610) | intergenic (–/‑167) | –/repA | –/replication protein A | |||||
| * | ? | CP000731 | = 64 | 638 (0.610) | 12 (0.020) +33 bp |
5/94 | NT | 6.1% | intergenic (–/‑168) | –/repA | –/replication protein A |
| ? | CP000731 | = 27041 | 0 (0.000) | intergenic (‑194/–) | USA300HOU_pUSA300HOUMR0033/– | partitioning protein/– | |||||
| * | ? | CP000731 | 11093 = | 922 (0.890) | 49 (0.050) | 19/146 | NT | 5.6% | intergenic (+98/‑166) | blaI/USA300HOU_pUSA300HOUMR0014 | beta‑lactamase regulator BlaI/recombinase |
| ? | CP000731 | 11129 = | 809 (0.860) | intergenic (+134/‑130) | blaI/USA300HOU_pUSA300HOUMR0014 | beta‑lactamase regulator BlaI/recombinase | |||||
| * | ? | CP000731 | = 12620 | 97 (0.090) | 10 (0.010) | 5/148 | NT | 13.4% | coding (114/675 nt) | USA300HOU_pUSA300HOUMR0016 | IS257 transposase |
| ? | CP000731 | = 12627 | 40 (0.040) | coding (121/675 nt) | USA300HOU_pUSA300HOUMR0016 | IS257 transposase | |||||
| * | ? | CP000731 | = 12646 | 219 (0.210) | 14 (0.010) | 9/146 | NT | 6.6% | coding (140/675 nt) | USA300HOU_pUSA300HOUMR0016 | IS257 transposase |
| ? | CP000731 | = 12648 | NA (NA) | coding (142/675 nt) | USA300HOU_pUSA300HOUMR0016 | IS257 transposase | |||||
| * | ? | CP000731 | 16918 = | NA (NA) | 6 (0.010) | 3/150 | NT | 100% | coding (144/675 nt) | USA300HOU_pUSA300HOUMR0021 | IS431 mec transposase |
| ? | CP000731 | 16924 = | 0 (0.000) | coding (138/675 nt) | USA300HOU_pUSA300HOUMR0021 | IS431 mec transposase | |||||
| * | ? | CP000731 | 16941 = | NA (NA) | 13 (0.010) | 9/148 | NT | 100% | coding (121/675 nt) | USA300HOU_pUSA300HOUMR0021 | IS431 mec transposase |
| ? | CP000731 | 16948 = | 0 (0.000) | coding (114/675 nt) | USA300HOU_pUSA300HOUMR0021 | IS431 mec transposase | |||||
| * | ? | CP000731 | = 17001 | NA (NA) | 31 (0.030) | 9/148 | NT | 100% | coding (61/675 nt) | USA300HOU_pUSA300HOUMR0021 | IS431 mec transposase |
| ? | CP000731 | = 17016 | 0 (0.000) | coding (46/675 nt) | USA300HOU_pUSA300HOUMR0021 | IS431 mec transposase | |||||
| * | ? | NC_012417 | 1975 = | NA (NA) | 133 (0.020) | 26/138 | NT | 5.3% | intergenic (+208/+118) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein |
| ? | NC_012417 | 2042 = | 2759 (0.270) | intergenic (+275/+51) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_012417 | = 1992 | 2954 (0.290) | 244 (0.030) | 33/148 | NT | 9.9% | intergenic (+225/+101) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein |
| ? | NC_012417 | = 2020 | 1699 (0.180) | intergenic (+253/+73) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_012417 | 1993 = | NA (NA) | 160 (0.020) | 21/148 | NT | 8.3% | intergenic (+226/+100) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein |
| ? | NC_012417 | 2021 = | 1924 (0.190) | intergenic (+254/+72) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 42564 = | 359 (1.200) | 17 (0.080) +TACATTATAAAATACATATC |
10/120 | NT | 6.8% | coding (1402/1524 nt) | USA300TCH1516_00035 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 2479065 | 269 (0.900) | intergenic (+21/+119) | USA300HOU_RS12765/hrtA_2 | hypothetical protein/Putative hemin import ATP‑binding protein HrtA | |||||
| * | ? | USA300TCH1516_ALE | 62270 = | 311 (1.040) | 22 (0.070) | 9/158 | NT | 6.4% | coding (264/810 nt) | USA300TCH1516_00053 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 68157 | 341 (1.160) | coding (273/852 nt) | USA300TCH1516_00061 | hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 65368 = | 276 (0.920) | 20 (0.080) | 13/134 | NT | 7.8% | intergenic (+200/+55) | adhD/USA300HOU_RS00280 | Putative alcohol dehydrogenase D/hypothetical protein |
| ? | USA300TCH1516_ALE | 65401 = | 242 (0.970) | intergenic (+233/+22) | adhD/USA300HOU_RS00280 | Putative alcohol dehydrogenase D/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | = 65380 | 264 (0.880) | 20 (0.080) | 13/134 | NT | 8.0% | intergenic (+212/+43) | adhD/USA300HOU_RS00280 | Putative alcohol dehydrogenase D/hypothetical protein |
| ? | USA300TCH1516_ALE | = 65387 | 242 (0.970) | intergenic (+219/+36) | adhD/USA300HOU_RS00280 | Putative alcohol dehydrogenase D/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 118853 = | 362 (1.210) | 17 (0.070) | 10/140 | NT | 5.7% | intergenic (+401/+92) | norB_1/USA300HOU_RS00550 | Quinolone resistance protein NorB/hypothetical protein |
| ? | USA300TCH1516_ALE | 118888 = | 248 (0.950) | intergenic (+436/+57) | norB_1/USA300HOU_RS00550 | Quinolone resistance protein NorB/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 133002 = | 303 (1.010) | 16 (0.060) | 10/152 | NT | 5.2% | coding (118/996 nt) | yfiZ_1 | putative siderophore transport system permease protein YfiZ |
| ? | USA300TCH1516_ALE | 133036 = | 298 (1.050) | coding (84/996 nt) | yfiZ_1 | putative siderophore transport system permease protein YfiZ | |||||
| * | ? | USA300TCH1516_ALE | 221178 = | 264 (0.880) | 17 (0.060) | 10/146 | NT | 6.7% | intergenic (‑224/+50) | ipdC/ptsG_1 | Indole‑3‑pyruvate decarboxylase/PTS system glucose‑specific EIICBA component |
| ? | USA300TCH1516_ALE | 221218 = | 236 (0.870) | intergenic (‑264/+10) | ipdC/ptsG_1 | Indole‑3‑pyruvate decarboxylase/PTS system glucose‑specific EIICBA component | |||||
| * | ? | USA300TCH1516_ALE | = 234750 | 270 (0.900) | 16 (0.060) | 14/140 | NT | 6.0% | intergenic (+48/+217) | USA300HOU_RS01045/gsiA | hypothetical protein/Glutathione import ATP‑binding protein GsiA |
| ? | USA300TCH1516_ALE | = 234763 | 262 (1.000) | intergenic (+61/+204) | USA300HOU_RS01045/gsiA | hypothetical protein/Glutathione import ATP‑binding protein GsiA | |||||
| * | ? | USA300TCH1516_ALE | = 263532 | 265 (0.890) | 18 (0.070) | 12/140 | NT | 7.1% | intergenic (+31/‑305) | pflA/ugpQ_2 | Pyruvate formate‑lyase‑activating enzyme/Glycerophosphodiester phosphodiesterase, cytoplasmic |
| ? | USA300TCH1516_ALE | = 263550 | 242 (0.930) | intergenic (+49/‑287) | pflA/ugpQ_2 | Pyruvate formate‑lyase‑activating enzyme/Glycerophosphodiester phosphodiesterase, cytoplasmic | |||||
| * | ? | USA300TCH1516_ALE | = 326023 | 286 (0.960) | 15 (0.060) | 12/142 | NT | 5.3% | intergenic (‑27/+41) | USA300HOU_RS01460/USA300HOU_RS01465 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 326041 | 286 (1.080) | intergenic (‑45/+23) | USA300HOU_RS01460/USA300HOU_RS01465 | hypothetical protein/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | = 384771 | 307 (1.030) | 15 (0.060) | 8/144 | NT | 5.2% | coding (1840/1956 nt) | licR | putative licABCH operon regulator |
| ? | USA300TCH1516_ALE | = 384781 | 274 (1.020) | coding (1830/1956 nt) | licR | putative licABCH operon regulator | |||||
| * | ? | USA300TCH1516_ALE | = 492723 | 232 (0.780) | 16 (0.070) | 7/128 | NT | 7.3% | intergenic (+145/+40) | sle1_1/USA300HOU_RS02345 | N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein |
| ? | USA300TCH1516_ALE | = 492741 | 221 (0.930) | intergenic (+163/+22) | sle1_1/USA300HOU_RS02345 | N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 512969 = | NA (NA) | 16 (0.060) | 8/142 | NT | NA | intergenic (+1037/‑5726) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 512991 = | NA (NA) | intergenic (+1059/‑5704) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | = 513409 | NA (NA) | 24 (0.090) | 12/148 | NT | NA | intergenic (+1477/‑5286) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 513414 | NA (NA) | intergenic (+1482/‑5281) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | 513645 = | NA (NA) | 12 (0.040) | 7/148 | NT | NA | intergenic (+1713/‑5050) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 513672 = | NA (NA) | intergenic (+1740/‑5023) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | = 513898 | NA (NA) | 5 (0.020) | 5/150 | NT | NA | intergenic (+1966/‑4797) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 513918 | NA (NA) | intergenic (+1986/‑4777) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | 514600 = | NA (NA) | 12 (0.040) | 7/146 | NT | NA | intergenic (+2668/‑4095) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 514618 = | NA (NA) | intergenic (+2686/‑4077) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | = 514606 | NA (NA) | 33 (0.120) | 17/146 | NT | NA | intergenic (+2674/‑4089) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 514610 | NA (NA) | intergenic (+2678/‑4085) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | 514694 = | NA (NA) | 32 (0.170) +30 bp |
9/100 | NT | 100% | intergenic (+2762/‑4001) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 558897 = | 0 (0.000) | intergenic (+110/+3692) | USA300TCH1516_00505/gabR | tRNA‑Ile/HTH‑type transcriptional regulatory protein GabR | |||||
| * | ? | USA300TCH1516_ALE | = 514987 | 200 (0.670) | 12 (0.050) | 6/142 | NT | 6.3% | intergenic (+3055/‑3708) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 514989 | 182 (0.690) | intergenic (+3057/‑3706) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | = 515130 | NA (NA) | 36 (0.130) | 18/146 | NT | NA | intergenic (+3198/‑3565) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 515141 | NA (NA) | intergenic (+3209/‑3554) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | 515911 = | NA (NA) | 15 (0.060) | 10/146 | NT | NA | intergenic (+3979/‑2784) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 515928 = | NA (NA) | intergenic (+3996/‑2767) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | = 515946 | NA (NA) | 10 (0.040) | 7/146 | NT | NA | intergenic (+4014/‑2749) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 515981 | NA (NA) | intergenic (+4049/‑2714) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | = 516021 | NA (NA) | 36 (0.130) | 11/148 | NT | NA | intergenic (+4089/‑2674) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 516028 | NA (NA) | intergenic (+4096/‑2667) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | 516506 = | NA (NA) | 3 (0.010) | 3/150 | NT | NA | intergenic (+4574/‑2189) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 516536 = | NA (NA) | intergenic (+4604/‑2159) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | 516934 = | NA (NA) | 16 (0.060) | 10/148 | NT | NA | intergenic (+5002/‑1761) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 516951 = | NA (NA) | intergenic (+5019/‑1744) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | 517277 = | NA (NA) | 24 (0.090) | 10/150 | NT | NA | intergenic (+5345/‑1418) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 517292 = | NA (NA) | intergenic (+5360/‑1403) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | = 517681 | NA (NA) | 24 (0.090) | 8/144 | NT | NA | intergenic (+5749/‑1014) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 517686 | NA (NA) | intergenic (+5754/‑1009) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | = 557256 | NA (NA) | 34 (0.130) | 12/142 | NT | NA | intergenic (+314/‑1455) | USA300TCH1516_00504/USA300TCH1516_00505 | tRNA‑Ala/tRNA‑Ile |
| ? | USA300TCH1516_ALE | = 557260 | NA (NA) | intergenic (+318/‑1451) | USA300TCH1516_00504/USA300TCH1516_00505 | tRNA‑Ala/tRNA‑Ile | |||||
| * | ? | USA300TCH1516_ALE | = 558929 | NA (NA) | 3 (0.010) | 3/144 | NT | NA | intergenic (+142/+3660) | USA300TCH1516_00505/gabR | tRNA‑Ile/HTH‑type transcriptional regulatory protein GabR |
| ? | USA300TCH1516_ALE | = 558960 | NA (NA) | intergenic (+173/+3629) | USA300TCH1516_00505/gabR | tRNA‑Ile/HTH‑type transcriptional regulatory protein GabR | |||||
| * | ? | USA300TCH1516_ALE | 682222 = | 314 (1.050) | 15 (0.060) | 11/140 | NT | 5.4% | intergenic (‑64/+45) | USA300TCH1516_00616/rcsF_2 | hypothetical protein/Outer membrane lipoprotein RcsF |
| ? | USA300TCH1516_ALE | 682264 = | 249 (0.950) | intergenic (‑106/+3) | USA300TCH1516_00616/rcsF_2 | hypothetical protein/Outer membrane lipoprotein RcsF | |||||
| * | ? | USA300TCH1516_ALE | = 710532 | 288 (0.960) | 14 (0.050) | 11/142 | NT | 5.1% | intergenic (+25/+36) | tarA/tagH_1 | N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH |
| ? | USA300TCH1516_ALE | = 710552 | 265 (1.000) | intergenic (+45/+16) | tarA/tagH_1 | N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH | |||||
| * | ? | USA300TCH1516_ALE | 760026 = | 269 (0.900) | 13 (0.050) | 9/132 | NT | 5.5% | coding (1674/1674 nt) | USA300HOU_RS03705 | Putative multidrug export ATP‑binding/permease protein |
| ? | USA300TCH1516_ALE | 760070 = | 229 (0.930) | intergenic (+44/+83) | USA300HOU_RS03705/mgrA | Putative multidrug export ATP‑binding/permease protein/HTH‑type transcriptional regulator MgrA | |||||
| * | ? | USA300TCH1516_ALE | = 775565 | 227 (0.760) | 12 (0.050) | 10/142 | NT | 5.3% | coding (549/1182 nt) | nagA | N‑acetylglucosamine‑6‑phosphate deacetylase |
| ? | USA300TCH1516_ALE | = 775573 | 232 (0.880) | coding (557/1182 nt) | nagA | N‑acetylglucosamine‑6‑phosphate deacetylase | |||||
| * | ? | USA300TCH1516_ALE | = 810109 | 224 (0.750) | 11 (0.040) | 9/134 | NT | 5.0% | intergenic (+40/‑78) | nrdE1/nrdF | Ribonucleoside‑diphosphate reductase subunit alpha 1/Ribonucleoside‑diphosphate reductase subunit beta |
| ? | USA300TCH1516_ALE | = 810116 | 228 (0.910) | intergenic (+47/‑71) | nrdE1/nrdF | Ribonucleoside‑diphosphate reductase subunit alpha 1/Ribonucleoside‑diphosphate reductase subunit beta | |||||
| * | ? | USA300TCH1516_ALE | = 891727 | 163 (0.550) | 16 (0.060) | 7/142 | NT | 8.1% | intergenic (+145/‑594) | USA300HOU_RS04385/rnmV_2 | hypothetical protein/Ribonuclease M5 |
| ? | USA300TCH1516_ALE | = 1469857 | 221 (0.840) | coding (97/132 nt) | USA300TCH1516_01369 | hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 903240 = | 278 (0.930) | 15 (0.060) | 9/140 | NT | 6.2% | coding (1888/2373 nt) | USA300HOU_RS04470 | hypothetical protein |
| ? | USA300TCH1516_ALE | 903267 = | 211 (0.810) | coding (1915/2373 nt) | USA300HOU_RS04470 | hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 933397 = | 248 (0.830) | 18 (0.070) | 14/130 | NT | 9.2% | intergenic (+14/+45) | USA300HOU_RS04645/yjlD | hypothetical protein/NADH dehydrogenase‑like protein YjlD |
| ? | USA300TCH1516_ALE | 933437 = | 155 (0.640) | intergenic (+54/+5) | USA300HOU_RS04645/yjlD | hypothetical protein/NADH dehydrogenase‑like protein YjlD | |||||
| * | ? | USA300TCH1516_ALE | = 1205288 | 207 (0.690) | 27 (0.100) | 10/150 | NT | 12.2% | intergenic (‑169/‑400) | USA300HOU_RS15290/lspA | hypothetical protein/Lipoprotein signal peptidase |
| ? | USA300TCH1516_ALE | = 1804927 | NA (NA) | intergenic (‑215/+426) | USA300TCH1516_01684/pyk | hypothetical protein/Pyruvate kinase | |||||
| * | ? | USA300TCH1516_ALE | = 1205323 | NA (NA) | 31 (0.110) +AGCGAA |
7/148 | NT | 18.8% | intergenic (‑204/‑365) | USA300HOU_RS15290/lspA | hypothetical protein/Lipoprotein signal peptidase |
| ? | USA300TCH1516_ALE | 2317633 = | 145 (0.490) | intergenic (+286/‑170) | iucC_3/USA300TCH1516_02193 | Aerobactin synthase/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 1279936 = | 287 (0.960) | 14 (0.070) +25 bp |
4/110 | NT | 6.8% | intergenic (+29/‑233) | cdsA/USA300HOU_RS06360 | Phosphatidate cytidylyltransferase/Putative zinc metalloprotease |
| ? | USA300TCH1516_ALE | 1279975 = | 275 (0.920) | intergenic (+68/‑194) | cdsA/USA300HOU_RS06360 | Phosphatidate cytidylyltransferase/Putative zinc metalloprotease | |||||
| * | ? | USA300TCH1516_ALE | = 1426794 | NA (NA) | 10 (0.040) | 5/146 | NT | NA | intergenic (‑525/+447) | pstS/cvfB | Phosphate‑binding protein PstS/Conserved virulence factor B |
| ? | USA300TCH1516_ALE | 1443594 = | NA (NA) | intergenic (‑167/+186) | USA300TCH1516_01342/brnQ_3 | hypothetical protein/Branched‑chain amino acid transport system 2 carrier protein | |||||
| * | ? | USA300TCH1516_ALE | = 1435396 | 272 (0.910) | 14 (0.050) | 9/140 | NT | 5.5% | intergenic (+33/‑110) | dapH/yxeP_3 | 2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑acetyltransferase/putative hydrolase YxeP |
| ? | USA300TCH1516_ALE | = 1435406 | 242 (0.930) | intergenic (+43/‑100) | dapH/yxeP_3 | 2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑acetyltransferase/putative hydrolase YxeP | |||||
| * | ? | USA300TCH1516_ALE | 1456948 = | 232 (0.780) | 11 (0.040) | 9/132 | NT | 6.2% | intergenic (‑62/‑182) | USA300HOU_RS07230/USA300HOU_RS07235 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1456990 = | 141 (0.570) | intergenic (‑104/‑140) | USA300HOU_RS07230/USA300HOU_RS07235 | hypothetical protein/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 1456995 = | 136 (0.460) | 26 (0.090) +TTAAA |
4/150 | NT | 12.0% | intergenic (‑109/‑135) | USA300HOU_RS07230/USA300HOU_RS07235 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1918582 | 272 (0.910) | intergenic (‑300/+198) | USA300HOU_RS07235/USA300HOU_RS09510 | hypothetical protein/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 1457708 = | 159 (0.530) | 8 (0.030) | 7/138 | NT | 5.0% | intergenic (+93/+38) | USA300HOU_RS07235/ybjG | hypothetical protein/Putative undecaprenyl‑diphosphatase YbjG |
| ? | USA300TCH1516_ALE | 1457734 = | 165 (0.640) | intergenic (+119/+12) | USA300HOU_RS07235/ybjG | hypothetical protein/Putative undecaprenyl‑diphosphatase YbjG | |||||
| * | ? | USA300TCH1516_ALE | = 1805311 | 263 (0.880) | 13 (0.050) | 10/144 | NT | 5.1% | intergenic (‑599/+42) | USA300TCH1516_01684/pyk | hypothetical protein/Pyruvate kinase |
| ? | USA300TCH1516_ALE | = 1805338 | 251 (0.940) | intergenic (‑626/+15) | USA300TCH1516_01684/pyk | hypothetical protein/Pyruvate kinase | |||||
| * | ? | USA300TCH1516_ALE | = 1901318 | 212 (0.710) | 15 (0.060) | 8/142 | NT | 6.6% | intergenic (‑314/‑209) | USA300HOU_RS09405/sdpR | hypothetical protein/Transcriptional repressor SdpR |
| ? | USA300TCH1516_ALE | = 1901341 | 234 (0.880) | intergenic (‑337/‑186) | USA300HOU_RS09405/sdpR | hypothetical protein/Transcriptional repressor SdpR | |||||
| * | ? | USA300TCH1516_ALE | 1903758 = | 240 (0.800) | 11 (0.050) | 7/124 | NT | 6.8% | intergenic (+212/+83) | arsC/atl_2 | Glutaredoxin arsenate reductase/Bifunctional autolysin |
| ? | USA300TCH1516_ALE | 1903801 = | 115 (0.500) | intergenic (+255/+40) | arsC/atl_2 | Glutaredoxin arsenate reductase/Bifunctional autolysin | |||||
| * | ? | USA300TCH1516_ALE | = 1955657 | 194 (0.650) | 20 (0.080) | 10/138 | NT | 9.8% | intergenic (‑711/+411) | gdmA/lukDv_2 | Lantibiotic gallidermin/Leucotoxin LukDv |
| ? | USA300TCH1516_ALE | = 1955663 | 201 (0.780) | intergenic (‑717/+405) | gdmA/lukDv_2 | Lantibiotic gallidermin/Leucotoxin LukDv | |||||
| * | ? | USA300TCH1516_ALE | 1960840 = | 279 (0.930) | 12 (0.050) | 13/126 | NT | 5.6% | intergenic (+860/+529) | USA300TCH1516_01817/USA300TCH1516_01818 | hypothetical protein/tRNA‑Ser |
| ? | USA300TCH1516_ALE | 1960879 = | 187 (0.800) | intergenic (+899/+490) | USA300TCH1516_01817/USA300TCH1516_01818 | hypothetical protein/tRNA‑Ser | |||||
| * | ? | USA300TCH1516_ALE | 2031750 = | 201 (0.670) | 16 (0.070) +CTTTGTTGGGGCCCC |
3/130 | NT | 7.1% | intergenic (+216/+274) | USA300HOU_RS10250/USA300HOU_RS10255 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 2866835 = | 312 (1.050) | intergenic (‑234/+219) | USA300HOU_RS14695/noc_2 | hypothetical protein/Nucleoid occlusion protein | |||||
| * | ? | USA300TCH1516_ALE | 2057377 = | 215 (0.720) | 14 (0.050) | 8/138 | NT | 7.1% | intergenic (+134/+158) | USA300HOU_RS10370/USA300HOU_RS10375 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 2057415 = | 180 (0.700) | intergenic (+172/+120) | USA300HOU_RS10370/USA300HOU_RS10375 | hypothetical protein/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | = 2087015 | 291 (0.970) | 20 (0.080) | 13/142 | NT | 6.8% | intergenic (‑166/‑519) | scn_3/chp | Staphylococcal complement inhibitor/Chemotaxis inhibitory protein |
| ? | USA300TCH1516_ALE | = 2087021 | 288 (1.090) | intergenic (‑172/‑513) | scn_3/chp | Staphylococcal complement inhibitor/Chemotaxis inhibitory protein | |||||
| * | ? | USA300TCH1516_ALE | 2088022 = | 203 (0.680) | 14 (0.060) | 7/126 | NT | 7.6% | intergenic (+39/+56) | chp/USA300HOU_RS10560 | Chemotaxis inhibitory protein/Glycyl‑glycine endopeptidase ALE‑1 |
| ? | USA300TCH1516_ALE | 2088070 = | 179 (0.760) | intergenic (+87/+8) | chp/USA300HOU_RS10560 | Chemotaxis inhibitory protein/Glycyl‑glycine endopeptidase ALE‑1 | |||||
| * | ? | USA300TCH1516_ALE | = 2088038 | 200 (0.670) | 13 (0.060) | 11/126 | NT | 7.2% | intergenic (+55/+40) | chp/USA300HOU_RS10560 | Chemotaxis inhibitory protein/Glycyl‑glycine endopeptidase ALE‑1 |
| ? | USA300TCH1516_ALE | = 2088052 | 179 (0.760) | intergenic (+69/+26) | chp/USA300HOU_RS10560 | Chemotaxis inhibitory protein/Glycyl‑glycine endopeptidase ALE‑1 | |||||
| * | ? | USA300TCH1516_ALE | 2207841 = | 284 (0.950) | 13 (0.050) | 9/142 | NT | 5.1% | intergenic (+202/+62) | rodA/USA300HOU_RS11255 | Peptidoglycan glycosyltransferase RodA/hypothetical protein |
| ? | USA300TCH1516_ALE | 2207874 = | 235 (0.890) | intergenic (+235/+29) | rodA/USA300HOU_RS11255 | Peptidoglycan glycosyltransferase RodA/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 2256396 = | 189 (0.630) | 11 (0.040) | 8/132 | NT | 6.4% | intergenic (+49/+72) | deoD1/dps | Purine nucleoside phosphorylase DeoD‑type 1/General stress protein 20U |
| ? | USA300TCH1516_ALE | 2256443 = | 168 (0.680) | intergenic (+96/+25) | deoD1/dps | Purine nucleoside phosphorylase DeoD‑type 1/General stress protein 20U | |||||
| * | ? | USA300TCH1516_ALE | = 2256409 | 189 (0.630) | 9 (0.040) | 9/132 | NT | 5.3% | intergenic (+62/+59) | deoD1/dps | Purine nucleoside phosphorylase DeoD‑type 1/General stress protein 20U |
| ? | USA300TCH1516_ALE | = 2256428 | 168 (0.680) | intergenic (+81/+40) | deoD1/dps | Purine nucleoside phosphorylase DeoD‑type 1/General stress protein 20U | |||||
| * | ? | USA300TCH1516_ALE | = 2319260 | 4 (0.010) | 9 (0.030) | 4/148 | NT | 83.0% | coding (178/345 nt) | USA300HOU_RS15290 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 2319266 | 0 (0.000) | coding (184/345 nt) | USA300HOU_RS15290 | hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 2473265 = | 334 (1.120) | 14 (0.060) | 10/126 | NT | 5.5% | intergenic (+99/+131) | USA300HOU_RS12730/bcr_1 | hypothetical protein/Bicyclomycin resistance protein |
| ? | USA300TCH1516_ALE | 2473309 = | 218 (0.930) | intergenic (+143/+87) | USA300HOU_RS12730/bcr_1 | hypothetical protein/Bicyclomycin resistance protein | |||||
| * | ? | USA300TCH1516_ALE | = 2492476 | 241 (0.810) | 20 (0.080) | 14/138 | NT | 8.1% | intergenic (+19/+27) | yhfP/rimI_4 | Putative quinone oxidoreductase YhfP/Ribosomal‑protein‑alanine acetyltransferase |
| ? | USA300TCH1516_ALE | = 2492487 | 246 (0.960) | intergenic (+30/+16) | yhfP/rimI_4 | Putative quinone oxidoreductase YhfP/Ribosomal‑protein‑alanine acetyltransferase | |||||
| * | ? | USA300TCH1516_ALE | = 2533878 | 269 (0.900) | 17 (0.060) | 11/148 | NT | 6.3% | coding (455/732 nt) | tcyC_2 | L‑cystine import ATP‑binding protein TcyC |
| ? | USA300TCH1516_ALE | = 2533890 | 254 (0.920) | coding (443/732 nt) | tcyC_2 | L‑cystine import ATP‑binding protein TcyC | |||||
| * | ? | USA300TCH1516_ALE | 2573677 = | 245 (0.820) | 13 (0.050) | 8/138 | NT | 5.5% | intergenic (‑203/+91) | norB_5/opuCD | Quinolone resistance protein NorB/Carnitine transport permease protein OpuCD |
| ? | USA300TCH1516_ALE | 2573715 = | 239 (0.930) | intergenic (‑241/+53) | norB_5/opuCD | Quinolone resistance protein NorB/Carnitine transport permease protein OpuCD | |||||
| * | ? | USA300TCH1516_ALE | 2580557 = | 286 (0.960) | 33 (0.120) | 11/148 | NT | 11.7% | intergenic (+192/‑416) | yveA/pnbA | Aspartate‑proton symporter/Para‑nitrobenzyl esterase |
| ? | USA300TCH1516_ALE | 2580587 = | 232 (0.840) | intergenic (+222/‑386) | yveA/pnbA | Aspartate‑proton symporter/Para‑nitrobenzyl esterase | |||||
| * | ? | USA300TCH1516_ALE | 2683696 = | 290 (0.970) | 14 (0.050) | 8/144 | NT | 5.3% | coding (622/1167 nt) | mvaS | Hydroxymethylglutaryl‑CoA synthase |
| ? | USA300TCH1516_ALE | 2683719 = | 241 (0.900) | coding (645/1167 nt) | mvaS | Hydroxymethylglutaryl‑CoA synthase | |||||
| * | ? | USA300TCH1516_ALE | = 2693379 | 249 (0.830) | 14 (0.060) | 9/136 | NT | 6.2% | intergenic (+50/+306) | mtrR/rocA | HTH‑type transcriptional regulator MtrR/1‑pyrroline‑5‑carboxylate dehydrogenase |
| ? | USA300TCH1516_ALE | = 2693404 | 212 (0.840) | intergenic (+75/+281) | mtrR/rocA | HTH‑type transcriptional regulator MtrR/1‑pyrroline‑5‑carboxylate dehydrogenase | |||||
| * | ? | USA300TCH1516_ALE | 2792614 = | 284 (0.950) | 13 (0.050) | 6/132 | NT | 5.7% | intergenic (+65/+47) | yvyI/yueB | Putative mannose‑6‑phosphate isomerase YvyI/ESX secretion system protein YueB |
| ? | USA300TCH1516_ALE | 2792656 = | 193 (0.790) | intergenic (+107/+5) | yvyI/yueB | Putative mannose‑6‑phosphate isomerase YvyI/ESX secretion system protein YueB | |||||
| * | ? | USA300TCH1516_ALE | 2797807 = | 284 (0.950) | 14 (0.050) | 9/142 | NT | 5.2% | intergenic (+95/+172) | USA300HOU_RS14370/USA300HOU_RS14375 | N‑acetylmuramoyl‑L‑alanine amidase domain‑containing protein/N‑carbamoylsarcosine amidase |
| ? | USA300TCH1516_ALE | 2797838 = | 256 (0.970) | intergenic (+126/+141) | USA300HOU_RS14370/USA300HOU_RS14375 | N‑acetylmuramoyl‑L‑alanine amidase domain‑containing protein/N‑carbamoylsarcosine amidase | |||||
| * | ? | USA300TCH1516_ALE | = 2797815 | 293 (0.980) | 15 (0.060) | 11/142 | NT | 5.5% | intergenic (+103/+164) | USA300HOU_RS14370/USA300HOU_RS14375 | N‑acetylmuramoyl‑L‑alanine amidase domain‑containing protein/N‑carbamoylsarcosine amidase |
| ? | USA300TCH1516_ALE | = 2797828 | 256 (0.970) | intergenic (+116/+151) | USA300HOU_RS14370/USA300HOU_RS14375 | N‑acetylmuramoyl‑L‑alanine amidase domain‑containing protein/N‑carbamoylsarcosine amidase | |||||
| * | ? | USA300TCH1516_ALE | 2847730 = | 219 (0.730) | 12 (0.050) | 10/132 | NT | 5.7% | intergenic (+39/+110) | yceI/USA300HOU_RS14590 | Protein YceI/Lactonase drp35 |
| ? | USA300TCH1516_ALE | 2847769 = | 219 (0.890) | intergenic (+78/+71) | yceI/USA300HOU_RS14590 | Protein YceI/Lactonase drp35 | |||||
| * | ? | USA300TCH1516_ALE | = 2847743 | 223 (0.750) | 19 (0.080) | 9/132 | NT | 8.6% | intergenic (+52/+97) | yceI/USA300HOU_RS14590 | Protein YceI/Lactonase drp35 |
| ? | USA300TCH1516_ALE | = 2847754 | 219 (0.890) | intergenic (+63/+86) | yceI/USA300HOU_RS14590 | Protein YceI/Lactonase drp35 | |||||