BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 492723	232 (0.780)	16 (0.070)	7/128	NT	7.3%	intergenic (+145/+40)	sle1_1/USA300HOU_RS02345	N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein
*	?	USA300TCH1516_ALE	= 492741	221 (0.930)	16 (0.070)	7/128	NT	7.3%	intergenic (+163/+22)	sle1_1/USA300HOU_RS02345	N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein

Only 100 of 342 total aligned reads displayed.

ATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAAC  >  USA300TCH1516_ALE/492651‑492831

aTTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATg                                                                                            >  1:4752292/1‑91 (MQ=255)

 ttttATGGCGGGGCTATCAAAGTCGTGCTTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGt                                                                                           <  2:2218653‑M2/91‑2 (MQ=255)

 ttttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGt                                                                                           <  2:4610630‑M2/91‑2 (MQ=255)

 ttttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGAATGGTCGAATGAACTTCATGTTCTATGt                                                                                           <  2:492084‑M2/91‑2 (MQ=255)

  tttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGtt                                                                                          >  1:1336365‑M2/1‑89 (MQ=255)

  tttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATAAAAAAAAAAAAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGtt                                                                                          >  2:1453113‑M2/1‑89 (MQ=255)

  tttATGGCGGGGCTATCAAAGTCGGGATTGGTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTTTGtt                                                                                          <  1:4093453‑M2/91‑3 (MQ=255)

    tATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcg                                                                                        >  1:4296150‑M2/1‑87 (MQ=255)

     aTGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcga                                                                                       <  2:5797064‑M2/91‑6 (MQ=255)

      tGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgac                                                                                      <  2:2503574‑M2/91‑7 (MQ=255)

      tGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgac                                                                                      <  2:103936‑M2/91‑7 (MQ=255)

      tGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgac                                                                                      <  1:559421‑M2/91‑7 (MQ=255)

       ggCGGGGCTATCCAAGTCGTGATTGTTGTTATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgacc                                                                                     <  2:3193671‑M2/91‑8 (MQ=255)

       ggCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgacc                                                                                     <  2:4770472‑M2/91‑8 (MQ=255)

       ggCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgacc                                                                                     >  1:103936‑M2/1‑84 (MQ=255)

       ggCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgacc                                                                                     >  2:4857622‑M2/1‑84 (MQ=255)

       ggCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgacc                                                                                     >  1:4607415‑M2/1‑84 (MQ=255)

        gCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgacca                                                                                    >  1:1494201‑M2/1‑83 (MQ=255)

            ggCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcc                                                                                >  1:991283‑M2/1‑79 (MQ=255)

            ggCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcc                                                                                >  1:3975074‑M2/1‑79 (MQ=255)

                aTCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcctttt                                                                            >  1:352697‑M2/1‑75 (MQ=255)

                 tCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTc                                                                           >  1:3658381/1‑91 (MQ=255)

                    aaGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGa                                                                        <  1:682994/91‑1 (MQ=255)

                        cGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTa                                                                    >  1:2808818/1‑91 (MQ=255)

                         gTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAg                                                                   >  1:4720785/1‑91 (MQ=255)

                             ttgttgTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAtt                                                               <  1:2984379/91‑1 (MQ=255)

                             ttgttgTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAtt                                                               >  1:5409630/1‑91 (MQ=255)

                                ttgtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCAt                                                            <  1:2084761/91‑1 (MQ=255)

                                 tgtAATATGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATg                                                           <  2:4515119/91‑1 (MQ=255)

                                  gtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGt                                                          >  2:950226/1‑91 (MQ=255)

                                  gtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGt                                                          <  1:5324506/91‑1 (MQ=255)

                                  gtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGt                                                          >  2:2686999/1‑91 (MQ=255)

                                  gtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGt                                                          >  2:2782617/1‑91 (MQ=255)

                                  gtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGt                                                          <  2:433694/91‑1 (MQ=255)

                                   tAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGtt                                                         <  2:1522900/91‑1 (MQ=255)

                                   tAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGtt                                                         <  1:434450/91‑1 (MQ=255)

                                   tAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGtt                                                         <  2:1709624/91‑1 (MQ=255)

                                   tAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGtt                                                         <  2:5074421/91‑1 (MQ=255)

                                    aaTAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGttt                                                        <  1:870681/91‑1 (MQ=255)

                                    aaTAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGttt                                                        >  1:3783841/1‑91 (MQ=255)

                                    aaTAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATACATGttt                                                        >  1:4677428/1‑91 (MQ=255)

                                      tAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTa                                                      <  1:2546456/91‑1 (MQ=255)

                                         gAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACtt                                                   >  2:202771/1‑91 (MQ=255)

                                          aaTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACttt                                                  <  2:2930247/91‑1 (MQ=255)

                                           aTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTg                                                 <  1:1087934/91‑1 (MQ=255)

                                           aTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTg                                                 <  2:3122163/91‑1 (MQ=255)

                                           aTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTg                                                 <  1:4426122/91‑1 (MQ=255)

                                            tttttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGc                                                <  1:392967/91‑1 (MQ=255)

                                            tttttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGc                                                <  1:5478384/91‑1 (MQ=255)

                                             ttttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCg                                               <  2:2312954/91‑1 (MQ=255)

                                                tGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAAt                                            >  1:5866190/1‑91 (MQ=255)

                                                tGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAAt                                            >  1:3470934/1‑91 (MQ=255)

                                                tGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAAt                                            >  2:5519825/1‑91 (MQ=255)

                                                tGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAAt                                            >  2:4703297/1‑91 (MQ=255)

                                                tGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAAt                                            >  1:1726248/1‑91 (MQ=255)

                                                tGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAAt                                            <  1:2119709/91‑1 (MQ=255)

                                                 gTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATg                                           >  2:851247/1‑91 (MQ=255)

                                                  tataTGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGc                                          >  1:4207202/1‑91 (MQ=255)

                                                  tataTGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGc                                          >  1:5175061/1‑91 (MQ=255)

                                                      tGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGt                                      <  2:5432732/91‑1 (MQ=255)

                                                       gAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTCGTATTCATGTTTTACTTTGCGAATGCTTGTa                                     <  1:5716379/91‑1 (MQ=255)

                                                          aaaGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAaat                                  <  2:528069/91‑1 (MQ=255)

                                                              gATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATc                              >  2:808092/1‑91 (MQ=255)

                                                               aTTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCt                             >  1:1242101/1‑91 (MQ=255)

                                                                ttGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTa                            >  2:3508693/1‑91 (MQ=255)

                                                                 tGGTCGAATGAACTTCATGTTCTATGTTAGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAg                           >  2:5605100/1‑91 (MQ=255)

                                                                  ggTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGc                          <  2:760102/91‑1 (MQ=255)

                                                                  ggTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGc                          <  1:505368/91‑1 (MQ=255)

                                                                   gTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCa                         <  1:3193671/91‑1 (MQ=255)

                                                                     cGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCAcc                       <  2:41032/91‑1 (MQ=255)

                                                                      gAATGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataa                      <  2:1592646‑M2/91‑71 (MQ=255)

                                                                      gAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCg                      <  2:2380933/91‑1 (MQ=255)

                                                                      gAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCg                      <  2:5353835/91‑1 (MQ=255)

                                                                         tGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataaaat                   <  1:2729380‑M2/91‑74 (MQ=255)

                                                                         tGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataaaat                   <  1:2269788‑M2/91‑74 (MQ=255)

                                                                         tGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGttt                   >  2:2997217/1‑91 (MQ=255)

                                                                         tGAACTTCATGTACTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATATTCTAGCACCGttt                   <  2:3740937/91‑1 (MQ=255)

                                                                          taaCTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTg                  <  2:2555487/90‑1 (MQ=255)

                                                                          gAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTg                  <  1:490016/91‑1 (MQ=255)

                                                                           aaCTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataaaattt                 <  2:3605780‑M2/91‑76 (MQ=255)

                                                                           aaCTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGt                 <  1:2608450/91‑1 (MQ=255)

                                                                           aaCTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGt                 <  1:2703100/91‑1 (MQ=255)

                                                                             cTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGtta               <  1:303182/91‑1 (MQ=255)

                                                                             cTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGtta               >  2:1777124/1‑91 (MQ=255)

                                                                             cTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGtta               >  1:192059/1‑91 (MQ=255)

                                                                              ttCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGttat              <  2:114180/91‑1 (MQ=255)

                                                                               tCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGttatt             >  1:3358809/1‑91 (MQ=255)

                                                                                cATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGttatta            >  2:1639920/1‑91 (MQ=255)

                                                                                   gTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAg         <  1:1770842/91‑1 (MQ=255)

                                                                                    ttCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGt        <  1:4562311/91‑1 (MQ=255)

                                                                                     tCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTa       <  1:5224214/91‑1 (MQ=255)

                                                                                      cTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTaa      >  2:2140876/1‑91 (MQ=255)

                                                                                      cTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTaa      >  2:2412277/1‑91 (MQ=255)

                                                                                       tATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTaac     >  1:316847/1‑91 (MQ=255)

                                                                                       tATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTaac     >  1:2417558/1‑91 (MQ=255)

                                                                                       tATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTaac     >  2:607827/1‑91 (MQ=255)

                                                                                        aTGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTaaca    >  2:5190993/1‑91 (MQ=255)

                                                                                        aTGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTaaca    <  2:4415870/91‑1 (MQ=255)

                                                                                         tGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTaacaa   <  1:2195342/91‑1 (MQ=255)

                                                                                         tGTTCGACCAAGCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTaacaa   >  2:5826112/1‑91 (MQ=255)

ATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAAC  >  USA300TCH1516_ALE/492651‑492831

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.