| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 492723 | 232 (0.780) | 16 (0.070) | 7/128 | NT | 7.3% | intergenic (+145/+40) | sle1_1/USA300HOU_RS02345 | N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein |
| ? | USA300TCH1516_ALE | = 492741 | 221 (0.930) | intergenic (+163/+22) | sle1_1/USA300HOU_RS02345 | N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein | |||||
Only 100 of 408 total aligned reads displayed.
AGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTT > USA300TCH1516_ALE/492633‑492813 | aGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAA < 1:929750‑M1/91‑1 (MQ=255)aGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAA < 1:5262886‑M1/91‑1 (MQ=255) tGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGa < 2:2167249/91‑1 (MQ=255) tGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGa > 1:1980905/1‑91 (MQ=255) aTTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACt > 1:821966/1‑91 (MQ=255) tGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTc < 1:4642878/91‑1 (MQ=255) tCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGt < 2:1193560/91‑1 (MQ=255) ccTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGGTTGGTCGAATGAACTTCATGtt > 1:4066048/1‑91 (MQ=255) cTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTTTTGTAGTAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTc < 2:3212671/91‑1 (MQ=255) cTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGTAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTc < 2:5651378/91‑1 (MQ=255) cTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTc < 1:491566/91‑1 (MQ=255) tagaTTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCt < 2:2793909/88‑1 (MQ=255) tAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCt > 2:1933377/1‑91 (MQ=255) aaaTTTTATGGCGGGGCTATCAAAGTCGTGACTGTTGTAATAGGAATTTTTGCATATGAAAAAGGATTTGTCGAATGAACCTCATGTTCTa > 1:5353835/1‑91 (MQ=255) aaTTTTATGGCGGGGCTATTAAAGTCGTGCTTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTAt > 2:4351449/1‑91 (MQ=255) aTTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagttca < 2:3383780‑M1/91‑19 (MQ=255) aTTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagttca < 2:2674111‑M1/91‑19 (MQ=255) aTTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATg > 1:4752292/1‑91 (MQ=255) aTTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCAAATGAACTTCATGTTCTATg < 2:3707466/91‑1 (MQ=255) ttttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagttcat < 1:1580297‑M1/91‑20 (MQ=255) ttttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGt > 1:3591688‑M2/1‑90 (MQ=255) ttttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGAATGGTCGAATGAACTTCATGTTCTATGt < 2:492084‑M2/91‑2 (MQ=255) tttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATAAAAAAAAAAAAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGtt > 2:1453113‑M2/1‑89 (MQ=255) tttATGGCGGGGCTATCAAAGTCGGGATTGGTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTTTGtt < 1:4093453‑M2/91‑3 (MQ=255) tATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcg > 1:4296150‑M2/1‑87 (MQ=255) aTGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcga < 2:5797064‑M2/91‑6 (MQ=255) aTGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcga > 1:4159831‑M2/1‑86 (MQ=255) tGGCGGGGCTATCCAAGTCGTGATTGTTGTAATAGGAATTTTTTTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgac < 2:2778061‑M2/91‑7 (MQ=255) tGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgac < 2:2503574‑M2/91‑7 (MQ=255) ggCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgacc > 2:5353810‑M2/1‑84 (MQ=255) ggCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgacc > 2:4857622‑M2/1‑84 (MQ=255) ggggCTAACAAAGTCGTGAATGTTGTAATAGGAGTTTTTGTGTATGAAAAAAGAATGGTCGAATGAACTTCATGTTCTATGTTGGACCaaa > 2:3902234/1‑90 (MQ=255) ggCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcc < 1:2312954‑M2/91‑13 (MQ=255) gCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcct > 1:5502157‑M2/1‑78 (MQ=255) gCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcct > 2:4824965‑M2/1‑78 (MQ=255) gCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcct > 1:2784295‑M2/1‑78 (MQ=255) aTCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcctttt > 1:352697‑M2/1‑75 (MQ=255) aTCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATG‑AAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTc > 2:2320969/1‑91 (MQ=255) tCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTc > 2:603142/1‑91 (MQ=255) tCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTc > 1:3658381/1‑91 (MQ=255) aaaGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTg > 1:148689/1‑91 (MQ=255) aaaGTCGTGATTGTTGTAATAGGAATTTTTGTATAAGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTg < 2:2029056/91‑1 (MQ=255) aaGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCTATCCTTTTCTGa < 2:1660538/91‑1 (MQ=255) aaGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGa > 1:2443174/1‑91 (MQ=255) aGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGaa > 1:5432732/1‑91 (MQ=255) gTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAg > 1:4720785/1‑91 (MQ=255) tGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGt > 1:2719939/1‑91 (MQ=255) gATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTa < 1:175765/91‑1 (MQ=255) ttgttgTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcg < 2:3523439‑M2/66‑5 (MQ=255) ttgttgTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAtt < 1:2984379/91‑1 (MQ=255) gtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGt < 2:4181729/91‑1 (MQ=255) gtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGt < 2:3182126/91‑1 (MQ=255) gtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGt > 2:950226/1‑91 (MQ=255) tAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGtt < 1:434394/91‑1 (MQ=255) tAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGtt < 2:1522900/91‑1 (MQ=255) tAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGtt < 1:689164/91‑1 (MQ=255) tAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGtt < 2:5074421/91‑1 (MQ=255) aaTAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGttt > 1:3783841/1‑91 (MQ=255) tAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTa < 1:2546456/91‑1 (MQ=255) aGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTAc < 1:4974286/91‑1 (MQ=255) ggAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACt > 2:1772900/1‑91 (MQ=255) aTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTg < 1:1087934/91‑1 (MQ=255) aTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTg < 1:4426122/91‑1 (MQ=255) aTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTg < 2:1029396/91‑1 (MQ=255) tttttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGc > 1:2174817/1‑91 (MQ=255) ttttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCg < 1:3192588/91‑1 (MQ=255) tGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAAt > 2:5519825/1‑91 (MQ=255) tGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAAt > 2:4703297/1‑91 (MQ=255) gTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATg > 1:2691289/1‑91 (MQ=255) tataTGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGc > 1:5175061/1‑91 (MQ=255) tatGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCtt < 2:844014/91‑1 (MQ=255) atGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTg < 1:3508147/91‑1 (MQ=255) atGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTg < 1:4235195/91‑1 (MQ=255) atGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTg < 2:2844724/91‑1 (MQ=255) tGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGt < 2:5432732/91‑1 (MQ=255) tGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGt > 1:2254838/1‑91 (MQ=255) aaaaGGATTGGTCGAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgat < 2:3007512‑M1/91‑76 (MQ=255) aaaGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAaat > 1:650796/1‑91 (MQ=255) aaaGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAaat < 2:528069/91‑1 (MQ=255) aTTGGTCGAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctttgacaacaatcacgactttgatagcccc < 1:3315036‑M1/91‑82 (MQ=255) aTTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCt > 2:2398797/1‑91 (MQ=255) ttGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTa < 2:10772/91‑1 (MQ=255) tGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAg > 1:3372047/1‑91 (MQ=255) tGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAg > 1:5612364/1‑91 (MQ=255) tGGTCGAATGAACTTCATGTTCTATGTTAGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAg > 2:5605100/1‑91 (MQ=255) ggTCGAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgcc < 2:4770472‑M1/91‑85 (MQ=255) ggTCGAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgcc > 1:103936‑M1/1‑7 (MQ=255) ggTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGc < 2:760102/91‑1 (MQ=255) ggTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGc < 2:4550913/91‑1 (MQ=255) gTCGAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgcca < 1:2115575‑M1/91‑86 (MQ=255) tCGAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccat < 2:4427950‑M1/91‑87 (MQ=255) gAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataa < 2:2310555‑M1/91‑89 (MQ=255) gAATGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataa < 1:5821220‑M2/91‑71 (MQ=255) gAATGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataa < 2:1592646‑M2/91‑71 (MQ=255) aacatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataaa > 1:1336365‑M1/1‑2 (MQ=255) aaTGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGt < 1:4597510/91‑1 (MQ=255) aaTGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGt < 1:3932710/91‑1 (MQ=255) acatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataaaa < 2:4610630‑M1/91‑91 (MQ=255) acatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaagcacgactttgatagccccgccataaaa < 2:2218653‑M1/91‑91 (MQ=255) aTGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataaaa < 1:4457811‑M2/91‑73 (MQ=255) | AGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTT > USA300TCH1516_ALE/492633‑492813 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |