| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 492723 | 232 (0.780) | 16 (0.070) | 7/128 | NT | 7.3% | intergenic (+145/+40) | sle1_1/USA300HOU_RS02345 | N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein |
| ? | USA300TCH1516_ALE | = 492741 | 221 (0.930) | intergenic (+163/+22) | sle1_1/USA300HOU_RS02345 | N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein | |||||
Only 100 of 146 total aligned reads displayed.
TTTCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/492618‑492723‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaggattggtcgaaCATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCATAAAA < USA300TCH1516_ALE/492741‑492652 TTTCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAA < 2:1017173/91‑1TTTCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAA < 1:3155088/91‑1TTTCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAA < 1:1731581/91‑1 TTCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGGTTGTTGTAATAGGAATTTTTGTATATGAAA > 2:2020622/1‑91 TTCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATTAAA > 2:5224214/1‑91 TTCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAA > 2:991283/1‑91 TCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAA < 2:1052749/91‑1 TCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAA < 1:1142014/91‑1 TCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAA < 1:3320540/91‑1 TCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCCGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAA > 1:5796357/1‑91 CACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAA < 1:3217266/91‑1 CAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGG < 1:5703419/91‑1 CAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGG < 1:1445542/91‑1 AAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGA < 1:4744013/91‑1 AAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGA < 1:3627653/91‑1 AAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTATGTAAATGAAAAAGGA < 2:3130358/91‑1 AAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATAATTATAAATGAAAAAGGA < 2:3819353/91‑1 AGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGAT > 1:3605780/1‑91 AGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGAT < 1:5786664/91‑1 AGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGAT < 2:2248841/91‑1 AGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGAT > 2:3410543/1‑91 AGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGAT < 1:2629800/91‑1 GCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTTTTTTAATAGGAATTTTTGTTTATGAAAAAGGATT > 2:2542033/1‑91 GCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGAat > 1:3424896/1‑89 GCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATT > 2:4481334/1‑91 CTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTG > 2:4730063/1‑91 CTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTG > 1:4646967/1‑91 GAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCCAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGT > 2:2119709/1‑91 GAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAATTCGTGATTGTTGTAATAGGGATTTTTGTATATGAAAAAGGATTGGT > 2:2472964/1‑91 GAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTTATAGGGATTTTTGTATATGAAAAAGGCTTGGT > 2:2474194/1‑91 GAAAAGTTGGATCGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGT < 2:3903359/91‑1 AAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTAAAAAAAAAAAAAAAGGATTGGTC < 2:2609390/91‑1 AAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAAATTTTGTATATGAAAAAGGATTGGTC > 2:3517599/1‑91 AAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAGGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCG < 2:5842207/91‑1 AAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCG > 2:3316459/1‑91 AAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCG < 1:673679/91‑1 AAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCG > 1:105656/1‑91 AAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGA < 1:2602104/91‑1 AAGTTGGATTGAATCCTAAATTTTATGGCGGGGCGATCAAAGTCGTGATTGTTTTAATAGGAATTTTTGTATATTAAAAAGGGTTGGTCGA > 2:4923828/1‑91 AAGTTGGATTGAATCCTAAATTTTATGGCGGGGATATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGAATATAAAAAAGGATTGGTCGA < 2:1266900/91‑1 AGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAA > 1:2032458/1‑91 AGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAA < 1:929750/91‑1 AGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAA < 1:677313/91‑1 AGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAA < 1:5262886/91‑1 AGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAA < 1:5194102/91‑1 AGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAA > 1:4824965/1‑91 AAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTT < 2:2512083/91‑1 AAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTT < 2:3605780/91‑1 AAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCG > 1:3866812/1‑73 AAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCG > 1:3866793/1‑73 AAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCG < 2:3866812/73‑1 ATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCA < 1:2729380/91‑1 ATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCA < 1:2269788/91‑1 ATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCA < 2:5054722/91‑1 ATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCA < 1:3066809/91‑1 ATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCA < 2:2674111/91‑1 TTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCAT < 1:4457811/91‑1 TTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCAT < 1:4457483/91‑1 TTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCAT < 1:1580297/91‑1 TTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTC < 2:1592646/91‑1 GGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACC < 1:4923902/91‑1 GCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCA < 2:2385277/91‑1 AAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGAT < 2:3007512/91‑1 AAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGAT > 1:352697/1‑91 AAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATA > 2:5484348/1‑91 AAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATA > 1:4235718/1‑91 AAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATA > 2:3329419/1‑91 AAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATA > 2:4571427/1‑91 AAAGGATTGCTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATCTACAAAAATTCCTATTACAACAATCACGACTTTGATA > 2:533035/1‑91 AGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGC > 1:4086216/1‑91 AGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGC > 2:4824965/1‑91 AGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGC > 1:2784295/1‑91 GGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCC < 1:2312954/91‑1 GGATTGGTCGAACATAGAACATGAAGTTAATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCC > 2:5611077/1‑91 ATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATCCCTATTACAACAATCACGACTTTGATAGCCCC < 2:4840211/91‑1 TTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCG > 1:256108/1‑91 GGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCC > 1:103936/1‑91 GGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCC > 1:882237/1‑91 GGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCC > 2:4857622/1‑91 GGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCC < 2:4770472/91‑1 GTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCA < 1:2115575/91‑1 GTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCA < 1:4721879/91‑1 GTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCA < 2:103936/91‑1 GTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCA < 1:3253734/91‑1 GTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCA < 1:559421/91‑1 GTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATAAAAAAATTCCTATTACAACAATCACGACTTGGATAGCCCCGCCA < 2:2778061/91‑1 GTCGAACATAGAACATGAAGTTCACTCGACTTACCGTTTTGCATATACAAAACTTCCTATGACAACAATCACGACTTTGATAGCCCCGCCA < 2:2836840/91‑1 TCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCAT < 2:4427950/91‑1 TCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCAT < 2:5797064/91‑1 TCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCAT < 2:1929158/91‑1 TCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATGACAACAATCACGACTTTGATAGCCCCGCCAT < 1:3623612/91‑1 CGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCATA > 1:4296150/1‑91 CGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAA > 1:3523439/1‑66 CGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAA < 2:3523439/66‑1 AACATAGAACATGAAGTTCATTCGACCAATCCTTTTTTTTTTTTTTTTATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCATAAA > 2:1453113/1‑91 AACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCGCGCCATAAA > 2:5544764/1‑91 AACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCATAAA > 1:1336365/1‑91 AACAAAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACACCAATCCCGACTTTGATAGCCCCGCCATAAA < 1:4093453/91‑1 ACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCATAAAA < 2:4610630/91‑1 ACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAAGCACGACTTTGATAGCCCCGCCATAAAA < 2:2218653/91‑1 TTTCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/492618‑492723‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaggattggtcgaaCATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCATAAAA < USA300TCH1516_ALE/492741‑492652 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |