| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1456995 = | 136 (0.460) | 26 (0.090) +TTAAA |
4/150 | NT | 12.0% | intergenic (‑109/‑135) | USA300HOU_RS07230/USA300HOU_RS07235 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1918582 | 272 (0.910) | intergenic (‑300/+198) | USA300HOU_RS07235/USA300HOU_RS09510 | hypothetical protein/hypothetical protein | |||||
Only 100 of 322 total aligned reads displayed.
TATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAAT > USA300TCH1516_ALE/1456905‑1457084 | atGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGt > 2:1811850/1‑91 (MQ=255) tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTa > 2:3018559/1‑91 (MQ=255) tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTa < 2:5635404/91‑1 (MQ=255) cGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTaaaaa < 2:3129774/91‑1 (MQ=255) gTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAg < 2:3641692/91‑1 (MQ=255) aaaGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGaaa > 1:5589533/1‑91 (MQ=255) aGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAAc > 1:4927178/1‑91 (MQ=255) aCAATATACGTTATAACAACGATTTATAAAAGCAGTAAACCCATACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCa > 1:1591502/1‑91 (MQ=255) cAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCAt < 2:4105348/91‑1 (MQ=255) cAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCAt > 1:4424649/1‑91 (MQ=255) aaaTATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCAt < 2:339528/90‑1 (MQ=255) aaTATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATa > 1:3562554/1‑91 (MQ=255) aaTATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATa > 1:2373660/1‑91 (MQ=255) atatACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATAc < 2:2650131/91‑1 (MQ=255) tataCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACg < 2:2279047/91‑1 (MQ=255) ataCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGc < 1:1949167/91‑1 (MQ=255) taCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCt < 1:276835/91‑1 (MQ=255) taCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCt < 2:4830826/91‑1 (MQ=255) aCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGcat < 1:771273/91‑3 (MQ=255) aCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTa < 2:2941142/91‑1 (MQ=255) cGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAt > 2:474699/1‑91 (MQ=255) gTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATg < 2:883459/91‑1 (MQ=255) taACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTa < 1:524432/91‑1 (MQ=255) acaacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATg > 1:1754118/1‑91 (MQ=255) acaacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATg > 1:4807604/1‑91 (MQ=255) caacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATgg < 2:3964887/91‑1 (MQ=255) acGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGTGTATGGtt > 2:1939153/1‑91 (MQ=255) cGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTc < 1:2643839/91‑1 (MQ=255) gTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCa > 1:2521750/1‑91 (MQ=255) ttttATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAg < 2:5122266/91‑1 (MQ=255) tttATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGa < 1:3119168/91‑1 (MQ=255) tttATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGa < 1:3745495/91‑1 (MQ=255) ttATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGaa > 1:1005700/1‑91 (MQ=255) ataAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGaaaa > 1:5763307/1‑91 (MQ=255) aaagcagtaaacctaaagtgtcgtaagggtttactgcttttGTTACTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGt > 2:5680494‑M2/42‑91 (MQ=255) AAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGt > 2:1196343‑M1/1‑91 (MQ=255) AGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTc < 2:1277659‑M1/91‑1 (MQ=255) AGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTc > 1:4269394‑M1/1‑91 (MQ=255) AGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTc > 1:5063991‑M1/1‑91 (MQ=255) GCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCt > 2:4454266‑M1/1‑91 (MQ=255) GCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCt > 1:2189173‑M1/1‑91 (MQ=255) CAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTa > 2:1101598‑M1/1‑91 (MQ=255) gccaaccgttgttatagtctaacaatggttggctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTAcc < 1:3306747‑M1/51‑1 (MQ=255) TAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCa < 2:4950458‑M1/91‑1 (MQ=255) AACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATTGTTCAGAAAAGGTTCTACCAtt < 2:1717919‑M1/91‑1 (MQ=255) ACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTATAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCattt < 2:2848405‑M1/91‑2 (MQ=255) ACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTg < 1:1381053‑M1/91‑1 (MQ=255) cgttgttatagtctaacaatggttggctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTc < 1:2125212‑M1/57‑1 (MQ=255) taaagtgtcgtaatggtttactgcttttGTCTTTTGTAAAAAGAAAACAATACGCTATGCGTATGGTTCAGAAAAGGTTCTACTATTGTca > 1:4657989‑M2/29‑91 (MQ=255) ttACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTcac < 1:3065105/91‑1 (MQ=255) ttACGACACTTTAGGTTTACTGCTTTTGTCTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTcaa > 2:3257486/1‑90 (MQ=255) tACGACACTTTAGGTTTACTGCTTTTGTTTTTTTTTTTTTTTTTACCATACGCAATGCGTATGGTTCAGAAAAGGTTCTACCATTGTcaca > 2:1429157/1‑91 (MQ=17) tACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTcaca > 1:4716541/1‑91 (MQ=255) aCGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGt < 2:4490936/86‑1 (MQ=255) aCGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGt > 1:4490936/1‑86 (MQ=255) aCGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACaa > 1:5011555/1‑91 (MQ=255) cacTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACaaaaaa > 1:111953/1‑91 (MQ=255) cgtaagggtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAAt > 1:4075099‑M2/21‑91 (MQ=255) cTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATg > 1:614253/1‑91 (MQ=255) ttAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCa < 1:2923016/91‑1 (MQ=255) aGGTTTACTGCTTTTGTGTTTTGGATAAAGAAAACGATACGCTATGCGTATGGTTCAGCAAGGGGTCTACCATTGTCACAAAGAATGCGtc < 2:4234166/91‑1 (MQ=17) ggtttactgcttttGTTTTTTGTACAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCAtct > 1:5655873‑M2/15‑91 (MQ=255) gtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAATAGGTTCTAAAATAATCACAAAAAATGCAtctc < 2:5483179‑M2/78‑1 (MQ=255) gtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCAtctc < 1:4314415‑M2/78‑1 (MQ=255) ttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTa > 2:721773‑M2/12‑91 (MQ=255) ttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTa < 2:5305838‑M2/80‑1 (MQ=255) ggttggctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACg > 2:509027‑M1/15‑91 (MQ=255) ggttggctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACg < 2:422461‑M1/77‑1 (MQ=255) ggttggctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACg < 1:3483284‑M1/77‑1 (MQ=255) ggttggctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACg < 2:3619019‑M1/77‑1 (MQ=255) ggttggctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACg < 1:1504024‑M1/77‑1 (MQ=255) actgcttttGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACg > 2:778576‑M2/10‑91 (MQ=255) gttggctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGt > 2:348984‑M1/14‑91 (MQ=255) ttggctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTg > 2:2216066‑M1/13‑91 (MQ=255) tgcttttGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTg < 2:4724044‑M2/84‑1 (MQ=255) tggctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGc < 1:1502934‑M1/80‑1 (MQ=255) gcttttGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGc > 1:1860147‑M2/7‑91 (MQ=255) gcttttGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGc < 2:976845‑M2/85‑1 (MQ=255) gcttttGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGc < 1:702637‑M2/85‑1 (MQ=255) gcttttGTTTTTCGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGc < 2:3801705‑M2/85‑1 (MQ=255) ggctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCt < 1:4553488‑M1/81‑1 (MQ=255) gctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTa < 1:593024‑M1/82‑1 (MQ=255) ctctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAg < 2:2730064‑M1/83‑1 (MQ=255) tctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGa > 2:2019857‑M1/8‑91 (MQ=255) tGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaa < 2:1588737‑M2/90‑1 (MQ=255) ctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaa > 1:5746121‑M1/7‑91 (MQ=255) ctttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTCCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaa > 2:4070730‑M1/7‑91 (MQ=255) tttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaat < 1:5476100‑M1/86‑1 (MQ=255) ttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaata < 1:1254521‑M1/87‑1 (MQ=255) ttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaata > 1:1273926‑M1/5‑91 (MQ=255) ttaaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaata > 2:525741‑M1/5‑91 (MQ=255) taaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaataa < 2:5167006‑M1/88‑1 (MQ=255) ttttGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaataaa < 1:388921/91‑1 (MQ=32) aaTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaataaa > 1:5497080‑M1/3‑91 (MQ=255) tttGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTa < 2:594469/76‑1 (MQ=31) tttGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaataaat > 1:2841832/1‑91 (MQ=31) tttGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaataaat > 1:4137288/1‑91 (MQ=31) aTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaataaat < 2:4185686‑M1/90‑1 (MQ=255) aTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaataaat > 1:3374502‑M1/2‑91 (MQ=255) aTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaataaat > 2:1855500‑M1/2‑91 (MQ=255) | TATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAAT > USA300TCH1516_ALE/1456905‑1457084 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |