| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1456995 = | 136 (0.460) | 26 (0.090) +TTAAA |
4/150 | NT | 12.0% | intergenic (‑109/‑135) | USA300HOU_RS07230/USA300HOU_RS07235 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1918582 | 272 (0.910) | intergenic (‑300/+198) | USA300HOU_RS07235/USA300HOU_RS09510 | hypothetical protein/hypothetical protein | |||||
ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1457084‑1456995‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGCCAACCATTGTTAGACTATAACAACGGTTGGC < USA300TCH1516_ALE/1918582‑1918548 ||||| ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAT < 2:4185686/91‑1ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAT > 2:1855209/1‑91ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAT > 2:2091160/1‑91ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAT > 2:1855500/1‑91ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAT > 1:3374502/1‑91ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAT > 1:2974872/1‑91ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAT > 2:1855729/1‑91 TTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATT > 1:1115340/1‑91 TTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATT > 1:5497080/1‑91 TTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTA < 2:5167128/91‑1 TTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTA < 2:5167006/91‑1 TATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAA < 1:1254521/91‑1 TATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAA > 1:1273926/1‑91 TATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAA > 2:525741/1‑91 ATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAA < 1:5476100/91‑1 ATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAA < 1:5476101/91‑1 TTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGGACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAG > 2:4070730/1‑91 TTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAG > 1:717095/1‑91 TTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAG > 1:5746839/1‑91 TTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAG > 1:5746121/1‑91 TCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGA > 1:2885682/1‑91 TCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGA > 2:2019857/1‑91 TCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGA > 1:1567270/1‑91 CTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAG < 2:2730064/91‑1 CTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAG < 2:927550/91‑1 CTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAG > 1:5300463/1‑91 CTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAG > 1:1236732/1‑91 CTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAG < 1:1875693/91‑1 TAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGC < 1:593024/91‑1 TAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGC < 2:2675344/91‑1 AGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCC < 1:4553488/91‑1 GCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCA < 1:1502934/91‑1 GCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCA > 2:1704120/1‑91 GCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCA < 2:3082245/91‑1 CACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAA > 1:5048982/1‑91 CACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAA > 2:2759773/1‑91 CACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAA > 2:2216066/1‑91 CACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAA < 2:2108180/91‑1 CACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAA < 1:230952/91‑1 CACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAA > 1:5707005/1‑91 ACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAAC > 2:699472/1‑91 ACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAAC > 2:348984/1‑91 CGTAGTGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACC < 1:1503724/91‑1 CGTAGATATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACC < 2:3618889/91‑1 CGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACC > 1:2558487/1‑91 CGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACC < 1:1503974/91‑1 CGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACC > 2:509027/1‑91 CGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACC < 2:422461/91‑1 CGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACC < 1:1504024/91‑1 CGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACC < 1:464452/91‑1 CGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACC < 2:3619019/91‑1 CGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACC < 1:3483284/91‑1 TTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAAC < 1:3504159/91‑1 TTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAAC < 1:4973938/91‑1 GTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAACAA < 2:406584/91‑1 GACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAACAACG < 1:2125212/91‑1 GGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAACAACGGTTGGC < 1:3306747/91‑1 ||||| ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1457084‑1456995‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGCCAACCATTGTTAGACTATAACAACGGTTGGC < USA300TCH1516_ALE/1918582‑1918548 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |