BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	65368 =	276 (0.920)	20 (0.080)	13/134	NT	7.8%	intergenic (+200/+55)	adhD/USA300HOU_RS00280	Putative alcohol dehydrogenase D/hypothetical protein
*	?	USA300TCH1516_ALE	65401 =	242 (0.970)	20 (0.080)	13/134	NT	7.8%	intergenic (+233/+22)	adhD/USA300HOU_RS00280	Putative alcohol dehydrogenase D/hypothetical protein

Only 100 of 444 total aligned reads displayed.

AAGATAAATGTTTTAAAACTAATTACTAATAGTTTTTTTAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGTTAAGTACCGTTGTAATAGAGTCATC  >  USA300TCH1516_ALE/65311‑65491

aagaTAAATGTTTTAAAACTAATTACTAATAGTTTTTTTAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGctct                                                                                            <  1:4731364/91‑1 (MQ=255)

 agaTAAATGTTTTAAAACTAATTACTAATAGTTTTTTTAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTa                                                                                           >  2:4016358/1‑91 (MQ=255)

   aTAAATGTTTTAAAACTAATTACTAATAGTTTTTTTAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGt                                                                                         <  1:1921190/91‑1 (MQ=255)

    tAAATGTTTTAAAACTAATTACTAATAGTTTTTTTAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGtt                                                                                        <  1:520774/91‑1 (MQ=255)

    tAAATGTTTTAAAACTAATTACTAATAGTTTTTTTAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGtt                                                                                        <  2:1666386/91‑1 (MQ=255)

        tGTTTTAAAACTAATTACTAATAGTTTTTTTAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTttat                                                                                    <  1:1034772/91‑1 (MQ=255)

        tGTTTTAAAACTAATTACTAATAGTTTTTTTAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTttat                                                                                    >  1:3707310/1‑91 (MQ=255)

          ttttAAAACTAATTACTAATAGTTTTTTTAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTttatta                                                                                  >  2:25161/1‑91 (MQ=255)

            ttAAAACTAATTACTAATAGTTTTTTTATAT‑ATTTAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGa                                                                                >  2:761812/1‑91 (MQ=39)

            attaatcattatctatcaaaatgaaaactatattctaataaaactagagcatccttcacttttgcggtgaaggatgctcCAGTTTTATTAg                                                                                 >  2:3143573‑M2/80‑91 (MQ=255)

            attaatcattatctatcaaaatgaaaactatattctaataaaactagagcatccttcaccgcaaaagtgaaggatgctcTAGTTTTATTAg                                                                                 <  2:3241899‑M2/12‑1 (MQ=255)

              aaaaCTAATTACTAAGAGTTTTCTTATAT‑AAAAAAAGATATAGGAACATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAat                                                                              <  2:5762046/91‑1 (MQ=255)

               aaaCTAATTACTAATAGTTTTTTTAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAata                                                                             >  1:1353912/1‑91 (MQ=255)

                aaCTAATTACTAATAGTTTTTTTAGATAAAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAata                                                                             <  2:1287120/91‑1 (MQ=255)

                  cTAATTACTAATAGTTTTTTTAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAg                                                                          <  2:2617902/91‑1 (MQ=255)

                  cTAATTACTAATAGTTTTTTTAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAg                                                                          <  1:3588387/91‑1 (MQ=255)

                  atAATTACTAATAGTTTTTTTAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAg                                                                          <  2:413958/90‑1 (MQ=255)

                   tAATTACTAATAGTTTTTTTGGAT‑AAAAAAAGATATAGTAGCATCCTTCACTGCAAAAGTTAAGGATGCTCTAGTTTTACTAGCAaatact                                                                         >  2:1016602/1‑89 (MQ=255)

                   tAATTACTAATAGTTTTTTTATAT‑AAAAAAAGATATAGTAGCATATCTCATTGCAAAATAAAAGAATGCTCTAGTTATATTAGAATATAga                                                                         >  2:1862959/1‑90 (MQ=255)

                   tAATTACTAATAGTTTTTTTAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGt                                                                         >  1:4140230/1‑91 (MQ=255)

                    aaTTACTAATAGTTTTTTTTTAT‑TTTTAAAGATATAGGAGCATCCTTCACCGCAAAATTGTAGGATGCTCTAGTTTTATTAGTTTATAGtt                                                                        >  2:229886/1‑91 (MQ=255)

                    aaTTACTAATAGTTTTTTTAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGtt                                                                        <  1:2804378/91‑1 (MQ=255)

                     aTTACTAATAGTTTTTTTAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGttt                                                                       <  2:5373337/91‑1 (MQ=255)

                     aTTACTAATAGTTTTTTTAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGttt                                                                       <  2:5108098/91‑1 (MQ=255)

                      ttACTAATAGTTTTTTTAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGtttt                                                                      <  1:2479713/91‑1 (MQ=255)

                      ttACTAATAGTTTTTTTAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGtttt                                                                      <  1:1482516/91‑1 (MQ=255)

                       tACTAATAGTTTTTTTAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTc                                                                     >  1:5571411/1‑91 (MQ=255)

                        aCTAATAGTTTTTTTAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCa                                                                    >  2:5170527/1‑91 (MQ=255)

                          tAATAGTTTTTTTAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCAtt                                                                  >  1:709960/1‑91 (MQ=255)

                               gTTTTTTTAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTgat                                                             <  1:196835/91‑1 (MQ=255)

                                tttttttAGTT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTgata                                                            >  2:1240839/1‑91 (MQ=255)

                                tttttttAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTgata                                                            <  2:3832959/91‑1 (MQ=255)

                                 ttttttAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTgatag                                                           <  2:3621551/91‑1 (MQ=255)

                                 ttttttAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTgatag                                                           >  2:5292288/1‑91 (MQ=255)

                                  tttttAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTgataga                                                          <  1:1075234/91‑1 (MQ=255)

                                   ttttAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTgatagat                                                         <  1:3944710/91‑1 (MQ=255)

                                    tttAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTgatagata                                                        >  1:3467828/1‑91 (MQ=255)

                                      tAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAAt                                                      <  1:4038671/91‑1 (MQ=255)

                                      tAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAAt                                                      >  1:5852743/1‑91 (MQ=255)

                                       aGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATg                                                     <  1:4327924/91‑1 (MQ=255)

                                       aGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATg                                                     <  1:5253797/91‑1 (MQ=255)

                                        tatattctaataaaactaGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATg                                                     >  1:4550685‑M1/19‑91 (MQ=255)

                                            aaaaaaaGATATCGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATta                                                 <  2:3756851/91‑1 (MQ=255)

                                            aaaaaaaGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATta                                                 <  1:507884/91‑1 (MQ=255)

                                             aaaaaaGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATtaa                                                <  1:4248871/91‑1 (MQ=255)

                                              aaaaaGATAGAGGAGCATCCTTCACCGCATAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGACAGATAATGATtaat                                               >  1:5373780/1‑91 (MQ=255)

                                               aaaaGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATtaata                                              >  1:2622512/1‑91 (MQ=255)

                                                 aaGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTaataat                                            >  2:4745109/1‑91 (MQ=255)

                                                  aGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAAtt                                           <  2:2987221/91‑1 (MQ=255)

                                                  aGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAAtt                                           >  1:327718/1‑91 (MQ=255)

                                                  aGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAAtt                                           >  2:883121/1‑91 (MQ=255)

                                                   gATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAAttg                                          >  1:4397315/1‑91 (MQ=255)

                                                     tataGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAAttgtt                                        >  2:2852395/1‑91 (MQ=255)

                                                     tataGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGATTTATTAGAATATAGTTTTCATTTTGATAGATAATTATTAATAAttgtt                                        >  2:2704341/1‑91 (MQ=255)

                                                      ataGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAAttgttt                                       >  1:1679527/1‑91 (MQ=255)

                                                       taGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAAttgtttt                                      >  2:446317/1‑90 (MQ=255)

                                                       taGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAAttgtttg                                      <  1:2744407/91‑1 (MQ=255)

                                                        aGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAAttgtttgt                                     >  2:4884423/1‑91 (MQ=255)

                                                         ggAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTa                                    <  1:2531704/91‑1 (MQ=255)

                                                         ggAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTCCCAGATAATGATTAATAATTGTTTGTa                                    >  1:2203501/1‑91 (MQ=255)

                                                          GAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTaa                                   >  1:4965099‑M1/1‑91 (MQ=255)

                                                          GAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTaa                                   >  2:2182177‑M1/1‑91 (MQ=255)

                                                           AGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTaaa                                  >  2:3032363‑M1/1‑91 (MQ=255)

                                                            GCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAAt                                 >  1:4828344‑M1/1‑91 (MQ=255)

                                                            GCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAAt                                 >  1:5120363‑M1/1‑91 (MQ=255)

                                                             catccttcacttttgcggtgaaggatgctcTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATc                                >  1:163868‑M2/31‑91 (MQ=255)

                                                              ATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCa                               >  1:3088493‑M1/1‑91 (MQ=255)

                                                                CCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCAtt                             <  2:2058222‑M1/91‑1 (MQ=255)

                                                                CCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCAtt                             >  2:4039570‑M1/1‑91 (MQ=255)

                                                                  TTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATCGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGt                           >  1:5694599‑M1/1‑91 (MQ=255)

                                                                  TTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGt                           >  1:2099195‑M1/1‑91 (MQ=255)

                                                                   TCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGtt                          >  1:4173469‑M1/1‑91 (MQ=255)

                                                                   TCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGtt                          >  2:913128‑M1/1‑91 (MQ=255)

                                                                   TCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGtt                          <  2:590553‑M1/91‑1 (MQ=255)

                                                                   TCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAACATACGTTACATCTTGACAGATAATGATTAATAATTGATCGTAAATCAttggt                          <  2:4952682‑M1/91‑3 (MQ=255)

                                                                    CACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGTTa                         >  1:387686‑M1/1‑91 (MQ=255)

                                                                    CACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGTTa                         >  2:3302924‑M1/1‑91 (MQ=255)

                                                                    CACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGTTa                         >  2:1354911‑M1/1‑91 (MQ=255)

                                                                        tttgcggtgaaggatgctcTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGTTAAGTa                     >  2:3469532‑M2/20‑91 (MQ=255)

                                                                          aaaaGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGTTAAGTAcc                   <  2:1491319/91‑1 (MQ=255)

                                                                          aaaaGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGTTAAGTAcc                   <  1:3339667/91‑1 (MQ=255)

                                                                          aaaaGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGTTAAGTAcc                   <  2:5246369/91‑1 (MQ=255)

                                                                          aaaaGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGTTAAGTAcc                   <  2:4930738/91‑1 (MQ=255)

                                                                          aaaaGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGAGAGATAATGATTAATAATTGTTTGTAAATCATTGTTAAGTAcc                   <  2:4292724/91‑1 (MQ=255)

                                                                              gtgaaggatgctcTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGTTAAGTACCGTTg               >  2:2480663‑M2/14‑91 (MQ=255)

                                                                               tgaaggatgctcTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGTTAAGTACCGTTGt              <  1:3655223‑M2/79‑1 (MQ=255)

                                                                                gaaggatgctcTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGTTAAGTACCGTTGTa             >  1:4458065‑M2/12‑91 (MQ=255)

                                                                                  aggatgctcTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGTTAAGTACCGTTGTAAt           >  1:2962496‑M2/10‑91 (MQ=255)

                                                                                  aggatgctcTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGTTAAGTACCGTTGTAAt           <  2:4585478‑M2/82‑1 (MQ=255)

                                                                                   ggatgctcTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGTTAAGTACCGTTGTAATa          >  1:1553253‑M2/9‑91 (MQ=255)

                                                                                    gatgctcTAGTTTTATTAGAATATAGTTTGCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGTTAAGTACCGTTGTAATag         <  1:5178729‑M2/84‑1 (MQ=255)

                                                                                      tgctcTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGTTAAGTACCGTTGTAATagag       <  1:917987‑M2/86‑1 (MQ=255)

                                                                                      tgctcTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGTTAAGTACCGTTGTAATagag       <  2:2028449‑M2/86‑1 (MQ=255)

                                                                                       gctcTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGTTAAGTACCGTTGTAATAGAGt      >  2:5507706‑M2/5‑91 (MQ=255)

                                                                                        ctcTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGTTAAGTACCGTTGTAATAGAGTc     <  1:1748520‑M2/88‑1 (MQ=255)

                                                                                         tcTAGTTTTATTAGAATATAGTTTTCATTTTCATAGATAATGATTAATAATTGTTTGTAAATCATTGTTAAGGACCGTTGTAATAGTGTCa    <  2:1801297‑M2/89‑1 (MQ=255)

                                                                                          cTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGTTAAGTACCGTTGTAATAGAGTCAt   >  2:5009773‑M2/2‑91 (MQ=255)

                                                                                          cTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGTTAAGTACCGTTGTAATAGAGTCAt   >  2:2351770‑M2/2‑91 (MQ=255)

                                                                                           tAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGTTAAGTACCGTTGTAATAGAGtcatc  >  2:3427659/1‑91 (MQ=255)

                                                                                           tAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGTTAAGTACCGTTGTAATAGAGtcatc  <  2:441917/91‑1 (MQ=255)

AAGATAAATGTTTTAAAACTAATTACTAATAGTTTTTTTAGAT‑AAAAAAAGATATAGGAGCATCCTTCACCGCAAAAGTGAAGGATGCTCTAGTTTTATTAGAATATAGTTTTCATTTTGATAGATAATGATTAATAATTGTTTGTAAATCATTGTTAAGTACCGTTGTAATAGAGTCATC  >  USA300TCH1516_ALE/65311‑65491

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.