| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 682222 = | 314 (1.050) | 15 (0.060) | 11/140 | NT | 5.4% | intergenic (‑64/+45) | USA300TCH1516_00616/rcsF_2 | hypothetical protein/Outer membrane lipoprotein RcsF |
| ? | USA300TCH1516_ALE | 682264 = | 249 (0.950) | intergenic (‑106/+3) | USA300TCH1516_00616/rcsF_2 | hypothetical protein/Outer membrane lipoprotein RcsF | |||||
Only 100 of 105 total aligned reads displayed.
AAAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/682321‑682222‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATTT > USA300TCH1516_ALE/682264‑682353 AAAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCG < 2:4822548/91‑1AAAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCG < 1:3513717/91‑1AAAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCG < 1:3412814/91‑1AAAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCG < 1:2504402/91‑1AAAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCG > 1:2690185/1‑91AAAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCG < 1:1929165/91‑1 AAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGG < 2:1781713/91‑1 AAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGG < 2:1434977/91‑1 AAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGG > 1:4637230/1‑91 AAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGG < 1:3745039/91‑1 AGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGG < 2:1330604/91‑1 GTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGA > 1:4711103/1‑91 GTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGA > 2:2480570/1‑91 TTTGAGAAAGATAATAAACCAGTTTATGACGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAG > 2:4723574/1‑91 TTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAG < 1:2528923/91‑1 TTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAG < 1:2778581/91‑1 TTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAG < 2:4760093/91‑1 TTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAG < 1:3705970/91‑1 TTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAG < 1:2146534/91‑1 TTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAG < 1:1673359/91‑1 TTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAG < 2:535926/91‑1 TTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAG < 2:595017/91‑1 TTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGT > 1:3330211/1‑91 TTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGT < 1:1684583/91‑1 TTGAGAAAGAGAAAAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGT < 2:1371974/91‑1 TGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTa > 1:263990/1‑90 TGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTT < 2:1185938/91‑1 TGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTT > 1:4196982/1‑91 TGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTT > 2:1201045/1‑91 TGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTT < 2:1209387/91‑1 TGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTT < 2:434413/91‑1 TGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTT < 2:2303305/91‑1 TGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTT < 2:4382125/91‑1 TGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTT > 2:2721304/1‑91 TGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTT > 1:1505266/1‑91 TGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTT > 1:2097670/1‑91 TGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTT < 1:2981101/91‑1 TGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTT < 1:2721304/91‑1 GAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTG > 2:2369023/1‑91 AGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGA < 2:4944833/91‑1 AGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGA > 2:2913151/1‑91 AGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGA > 2:1088723/1‑91 AGAAAGATAAGAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGA < 1:5835699/91‑1 ATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAA > 2:2287243/1‑91 TGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTG > 1:4714992/1‑91 ATCAACTCCCTATACGCTTTAGCGATGGTATCGGTAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACCGGTTTATTATCTTTC > 2:3485758/1‑91 CAACTCCCTATACGCTTTAGCGATGGTATCGGGAGATGATCCTTTATCTTTTCATATTACTTTCTTCATACACTGGTTTATTATCTTTCTC > 2:1933902/1‑91 CCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACT > 1:4058395/1‑91 CCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTT > 1:3365164/1‑91 CCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTT > 1:2420552/1‑91 CTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTT > 2:2594737/1‑91 CTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTT > 2:2595334/1‑91 TATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTT > 1:2257382/1‑91 ACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAG > 1:5665999/1‑91 ACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAG > 2:1437349/1‑91 TAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTT > 1:2542513/1‑62 TAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTT < 2:2542513/62‑1 GGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTC > 1:220463/1‑91 GGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTC > 2:1573222/1‑91 GGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTC < 2:4589763/91‑1 GGGAGTTGATTCTTTATTTTCTCATATTATTTCCTTCATAAACTGGTTTATTATCTTTCTCACACTTTTCAGCATCAATATTAGAATCTTC < 2:4379516/91‑1 GAGTTGATTCTTTATTTTTTCTTATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTT > 2:446834/1‑91 GAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTT < 2:1216958/91‑1 GAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTT < 1:5749615/91‑1 GAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTT > 1:21848/1‑91 GAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTT < 1:4581686/91‑1 AGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTTTCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTC < 2:3954354/91‑1 AGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTC < 2:2686082/91‑1 AGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTC > 2:4676085/1‑91 AGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTC < 1:4600487/91‑1 AGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTC < 1:2295205/91‑1 GTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCA > 1:4161869/1‑91 GTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCA > 1:1766923/1‑91 GTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCA > 1:2858532/1‑91 GTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCA < 2:3550846/91‑1 GTTGATTCTTTATTTTATCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATAGTAGAATCTTCTTCA > 1:5374162/1‑91 TTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCAT > 1:566239/1‑91 TTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCAT < 2:3459052/91‑1 TTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCAT > 1:2094226/1‑91 TTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCAT < 1:2555682/91‑1 TTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCAT < 1:3360511/91‑1 TTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCAT < 1:3361661/91‑1 TTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCAT < 1:5073228/91‑1 TTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCAT < 1:3609895/91‑1 TGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATA > 1:1304530/1‑91 TGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATA > 2:3044507/1‑91 TGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATA > 2:3499986/1‑91 TGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATA > 1:3850445/1‑91 GATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATAT < 1:4428762/91‑1 GATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATAT > 2:5331721/1‑91 GATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATAT > 2:2511446/1‑91 GATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATAT < 1:4971615/91‑1 GATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATAT > 1:1049606/1‑91 ATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAATCTTTTCATCATCATTATTAGCGTCTTCTTCATATT > 2:2242862/1‑91 ATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATT > 2:1707825/1‑91 ATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATT > 1:147545/1‑91 TTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCGTATTT > 2:1745537/1‑91 TTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATTT < 1:5403275/91‑1 TTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATTT < 2:3860799/91‑1 TTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATTT > 1:2627384/1‑91 AAAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/682321‑682222‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATTT > USA300TCH1516_ALE/682264‑682353 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |