New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 682222 =314 (1.050)15 (0.060) 11/140 NT 5.4% intergenic (‑64/+45) USA300TCH1516_00616/rcsF_2 hypothetical protein/Outer membrane lipoprotein RcsF
?USA300TCH1516_ALE 682264 = 249 (0.950)intergenic (‑106/+3) USA300TCH1516_00616/rcsF_2 hypothetical protein/Outer membrane lipoprotein RcsF

Only 100 of 419 total aligned reads displayed.

CTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATTTA  >  USA300TCH1516_ALE/682174‑682354
                                                                                          |                                                                                          
 ttttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTc                                                                                           <  1:2183074/91‑1 (MQ=255)
  tttAAGAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCt                                                                                          <  1:2676601/91‑1 (MQ=255)
  tttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCt                                                                                          <  2:3119476/91‑1 (MQ=255)
   ttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCtt                                                                                         <  1:3600983/91‑1 (MQ=255)
   ttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCtt                                                                                         <  2:3590134/91‑1 (MQ=255)
     aaaaaGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTa                                                                                       >  2:3330211/1‑91 (MQ=255)
        aaGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAttt                                                                                    <  2:1006973/91‑1 (MQ=255)
          ggTTATTTATACAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGAGTCTTTAttttt                                                                                  >  2:5829436/1‑91 (MQ=255)
          ggTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAttttt                                                                                  >  2:1456870/1‑91 (MQ=255)
          ggTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAttttt                                                                                  >  1:4180606/1‑91 (MQ=255)
            ttatttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTtctc                                                                                >  2:4157071/1‑91 (MQ=255)
            ttatttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTc                                                                                >  2:4447187/1‑91 (MQ=255)
            ttatttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTc                                                                                >  1:3838791/1‑91 (MQ=255)
             tatttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCa                                                                               <  2:4612/91‑1 (MQ=255)
               tttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCata                                                                             <  1:3964357/91‑1 (MQ=255)
               tttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCata                                                                             <  2:2509761/91‑1 (MQ=255)
                ttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCatat                                                                            >  2:1310849/1‑91 (MQ=255)
                       aTAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTttc                                                                     >  2:451237/1‑91 (MQ=255)
                         aaGTTATAAGAGGATATATGTTCATCAACTCCCGATATCATCGCTAATGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTttctt                                                                   <  2:4690595/91‑1 (MQ=255)
                          aGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTttcttc                                                                  >  1:4241107/1‑91 (MQ=255)
                          aGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTttcttc                                                                  >  1:814851/1‑91 (MQ=255)
                           gTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCa                                                                 >  1:5531077/1‑91 (MQ=255)
                           gTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCa                                                                 >  2:3197850/1‑91 (MQ=255)
                           gTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCa                                                                 >  2:4789355/1‑91 (MQ=255)
                            ttATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCAt                                                                <  2:1679502/91‑1 (MQ=255)
                             tataAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTGATATTATTTTCTTCATa                                                               <  1:4447187/91‑1 (MQ=255)
                              ataAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATaa                                                              >  1:3313703/1‑91 (MQ=255)
                              ataAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATaa                                                              <  1:2799491/91‑1 (MQ=255)
                                aaGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAAc                                                            <  2:3020477/91‑1 (MQ=255)
                                 agagGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACt                                                           <  1:562336/91‑1 (MQ=255)
                                  tgaaaaaataaagaatcaactccctatacgctttagcgatggtatcgggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTg                                                          >  1:4714992‑M2/57‑91 (MQ=255)
                                  gagGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTg                                                          <  2:3399439/91‑1 (MQ=255)
                                  gagGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTg                                                          <  1:4037019/91‑1 (MQ=255)
                                   agGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTgg                                                         <  1:5003586/91‑1 (MQ=255)
                                      atatatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGttt                                                      <  1:1608276/91‑1 (MQ=255)
                                       tatatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTtta                                                     >  1:5152288/1‑91 (MQ=255)
                                        atatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttat                                                    >  2:5102952/1‑91 (MQ=255)
                                        atatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttat                                                    >  2:1120922/1‑91 (MQ=255)
                                         tatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGAGTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttatt                                                   >  1:5704523/1‑91 (MQ=255)
                                         tatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTCATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttatt                                                   <  2:5691769/91‑1 (MQ=255)
                                          atGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttatta                                                  <  2:634151/91‑1 (MQ=255)
                                           tGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTtattat                                                 >  1:11939/1‑91 (MQ=255)
                                           tGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTtattat                                                 >  1:5255094/1‑91 (MQ=255)
                                              tcatcaACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCtt                                              >  2:2543163/1‑91 (MQ=255)
                                              tcatcaACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCtt                                              >  1:4534823/1‑91 (MQ=255)
                                                 TCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTCTTATCTTtct                                           <  1:5835699‑M1/91‑1 (MQ=255)
                                                 TCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTtct                                           >  2:2913151‑M1/1‑91 (MQ=255)
                                                   AACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCa                                         <  2:2303305‑M1/91‑1 (MQ=255)
                                                   AACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCa                                         >  2:2721304‑M1/1‑91 (MQ=255)
                                                   AACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCa                                         >  2:1201045‑M1/1‑91 (MQ=255)
                                                   AACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCa                                         <  1:2981101‑M1/91‑1 (MQ=255)
                                                    ACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTTTTCTCTTTCTCaa                                        <  2:1371974‑M1/91‑1 (MQ=255)
                                                        cctatacgctttagcgatggtatcgggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACtt                                    >  1:3365164‑M2/35‑91 (MQ=255)
                                                        cctatacgctttagcgatggtatcgggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACtt                                    >  1:2420552‑M2/35‑91 (MQ=255)
                                                        CCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACtt                                    <  2:1781713‑M1/91‑1 (MQ=255)
                                                        CCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACtt                                    <  1:3745039‑M1/91‑1 (MQ=255)
                                                         CGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACttt                                   <  1:1929165‑M1/91‑1 (MQ=255)
                                                          tatacgctttagcgatggtatcgggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACtttt                                  >  1:2257382‑M2/33‑91 (MQ=255)
                                                          gATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACtttt                                  >  2:1976143/1‑91 (MQ=255)
                                                            tACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCa                                <  2:4334082/91‑1 (MQ=255)
                                                             aCCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAg                               <  2:1590971/91‑1 (MQ=255)
                                                             aCCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAg                               >  1:351217/1‑91 (MQ=255)
                                                             aCCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAg                               >  2:243647/1‑91 (MQ=255)
                                                                 tCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATc                           >  1:4338692/1‑91 (MQ=255)
                                                                 tCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATc                           >  2:5435937/1‑91 (MQ=255)
                                                                   tagcgatggtatcgggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGttt                                                      >  1:2542513‑M2/24‑62 (MQ=255)
                                                                   gCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCaa                         <  2:904840/91‑1 (MQ=255)
                                                                      aaaGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAatat                      >  2:378843/1‑91 (MQ=255)
                                                                       aaGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATAtt                     <  1:3175977/91‑1 (MQ=255)
                                                                        aGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTa                    >  1:1004415/1‑91 (MQ=255)
                                                                        aGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTa                    >  2:2025312/1‑91 (MQ=255)
                                                                        aGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTa                    <  2:1894750/91‑1 (MQ=255)
                                                                        aGCGTATAGGGAGATGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCACCATCAATATTa                    >  2:3461612/1‑91 (MQ=255)
                                                                         gCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAg                   >  2:2639816/1‑91 (MQ=255)
                                                                         gCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAg                   >  2:2887510/1‑91 (MQ=255)
                                                                         gCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAg                   >  2:1177664/1‑91 (MQ=255)
                                                                          cGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGa                  <  1:1559267/91‑1 (MQ=255)
                                                                          cGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGa                  >  2:5007760/1‑91 (MQ=255)
                                                                           gTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGaa                 <  1:486494/91‑1 (MQ=255)
                                                                             ataGGGAGTTGATTCTTTATTTTTTTATTTTTTTTTCTTCATAAACTGGTTTATTATCTTTCTCATATTTTTCAGCATCAATATTAGAAtc               >  2:2364691/1‑91 (MQ=255)
                                                                             ataGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAAtc               >  1:4171722/1‑91 (MQ=255)
                                                                             ataGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAAtc               >  2:280303/1‑91 (MQ=255)
                                                                              taGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAAtct              <  2:1062320/91‑1 (MQ=255)
                                                                              taGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAAtct              <  1:4760093/91‑1 (MQ=255)
                                                                               aGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAAtctt             >  1:3871344/1‑91 (MQ=255)
                                                                               aGGGAGTCGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAAtctt             <  1:4666068/91‑1 (MQ=255)
                                                                                  gagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATcttctt          <  1:4581686‑M2/83‑1 (MQ=255)
                                                                                   agttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTTTCTTTCTCAAACTTTTCAGCATCAATATTAGAATCttcttc         <  2:3954354‑M2/84‑1 (MQ=255)
                                                                                    gttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCa        >  1:1766923‑M2/7‑91 (MQ=255)
                                                                                    gttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCa        <  2:3550846‑M2/85‑1 (MQ=255)
                                                                                    gttgatTCTTTATTTTATCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATAGTAGAATCTTCTTCa        >  1:5374162‑M2/7‑91 (MQ=255)
                                                                                     ttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCat       >  1:2094226‑M2/6‑91 (MQ=255)
                                                                                      tgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCata      >  1:1304530‑M2/5‑91 (MQ=255)
                                                                                       gatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCatat     >  2:5331721‑M2/4‑91 (MQ=255)
                                                                                       gatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCatat     <  1:4971615‑M2/88‑1 (MQ=255)
                                                                                        atTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAATCTTTTCATCATCATTATTAGCGTCTTCTTCATAtt    >  2:2242862‑M2/3‑91 (MQ=255)
                                                                                        atTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATAtt    >  1:147545‑M2/3‑91 (MQ=255)
                                                                                         tTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATAttt   >  1:2627384‑M2/2‑91 (MQ=255)
                                                                                          tCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATTTa  >  2:1833116/1‑91 (MQ=255)
                                                                                          tCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATTTa  >  2:80511/1‑91 (MQ=255)
                                                                                          |                                                                                          
CTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATTTA  >  USA300TCH1516_ALE/682174‑682354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.