BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	682222 =	314 (1.050)	15 (0.060)	11/140	NT	5.4%	intergenic (‑64/+45)	USA300TCH1516_00616/rcsF_2	hypothetical protein/Outer membrane lipoprotein RcsF
*	?	USA300TCH1516_ALE	682264 =	249 (0.950)	15 (0.060)	11/140	NT	5.4%	intergenic (‑106/+3)	USA300TCH1516_00616/rcsF_2	hypothetical protein/Outer membrane lipoprotein RcsF

Only 100 of 413 total aligned reads displayed.

TTCTTTACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTT  >  USA300TCH1516_ALE/682132‑682310

ttCTTTACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTtca                                                                                          >  2:5810854/1‑91 (MQ=255)

aaatatgaagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaa                                                                                          <  1:5403275‑M1/1‑1 (MQ=255)

  cTTTACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTtcatc                                                                                        <  2:2431630/91‑1 (MQ=255)

  cTTTACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTtcatc                                                                                        <  2:4028474/91‑1 (MQ=255)

  cTTTACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTtcatc                                                                                        >  1:2329935/1‑91 (MQ=255)

  cTTTACGTTTTTTTCTTTGTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGGTATAAGAGGATATATGTtcatc                                                                                        <  2:2205800/91‑1 (MQ=255)

  atatgaagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATc                                                                                        <  1:4428762‑M1/3‑1 (MQ=255)

   tttACGTTTTTTTTTTTTTTTTATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTtcatca                                                                                       >  2:3207230/1‑91 (MQ=255)

   tttACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATCTtcatca                                                                                       >  2:5591202/1‑91 (MQ=255)

    ttACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCaa                                                                                      >  1:4767421/1‑91 (MQ=255)

    ttACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCaa                                                                                      <  1:2613861/91‑1 (MQ=255)

    ttACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCaa                                                                                      >  1:4612/1‑91 (MQ=255)

    atgaagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCaa                                                                                      <  1:3361661‑M1/5‑1 (MQ=255)

     tgaagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAAc                                                                                     <  2:3550846‑M1/6‑1 (MQ=255)

     tACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAAc                                                                                     <  2:2506814/91‑1 (MQ=255)

       aagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTc                                                                                   >  1:21848‑M1/84‑91 (MQ=255)

       aagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTc                                                                                   <  2:1216958‑M1/8‑1 (MQ=255)

             tttctttttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATa                                                                             >  2:4428762/1‑91 (MQ=255)

              ttctttttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATAc                                                                            >  2:671628/1‑91 (MQ=255)

               tcttttttttATTTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAATTTATAAGAGGTTATATGTTCATCAACTCCCGATAcc                                                                           >  2:3661865/1‑91 (MQ=255)

                ctttttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCa                                                                          >  1:1262022/1‑91 (MQ=255)

                  ttttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATc                                                                        <  2:4967445/91‑1 (MQ=255)

                    ttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCAt                                                                         <  1:433067/88‑1 (MQ=255)

                     tttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCt                                                                     <  1:918979/91‑1 (MQ=255)

                       tcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTaa                                                                   <  1:2286695/91‑1 (MQ=255)

                       tcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTaa                                                                   >  2:3360511/1‑91 (MQ=255)

                        cATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTaaa                                                                  <  2:534922/91‑1 (MQ=255)

                        cATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTaaa                                                                  <  1:1821025/91‑1 (MQ=255)

                        cATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTaaa                                                                  <  1:3047312/91‑1 (MQ=255)

                          tGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGc                                                                >  2:2726767/1‑91 (MQ=255)

                          tGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGc                                                                >  1:2486345/1‑91 (MQ=255)

                           gTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCg                                                               <  1:4530168/91‑1 (MQ=255)

                           gTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCg                                                               <  2:1350897/91‑1 (MQ=255)

                            tataTCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGt                                                              >  1:3308078/1‑91 (MQ=255)

                            tataTCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGt                                                              <  1:4503426/91‑1 (MQ=255)

                             atatCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGta                                                             >  1:3157516/1‑91 (MQ=255)

                             atatCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGta                                                             <  2:4297626/91‑1 (MQ=255)

                               atCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGtata                                                           <  2:169217/91‑1 (MQ=255)

                                aaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTCCCGATACCATCGCTAAAGCGTATAg                                                          >  2:2595334‑M1/59‑91 (MQ=255)

                                 cctcctTTACTTTTAAAAAGGTTATTTTTAAAATAAGTTATAAGATGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAgg                                                         <  1:1473576/91‑1 (MQ=255)

                                 cctcctTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAgg                                                         <  2:1618448/91‑1 (MQ=255)

                                  ctcctTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAggg                                                        >  2:195028/1‑91 (MQ=255)

                                  ctcctTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAggg                                                        >  1:1352510/1‑91 (MQ=255)

                                    cctTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAACGCGTATAGGGAg                                                      >  2:3879605/1‑91 (MQ=255)

                                    cctTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAg                                                      >  2:1738248/1‑91 (MQ=255)

                                    cctTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAg                                                      >  1:2997859/1‑91 (MQ=255)

                                    cctTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAg                                                      >  2:104853/1‑91 (MQ=255)

                                     ctTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGt                                                     >  2:4616649/1‑91 (MQ=255)

                                         gaaagataataaaccggtttatgaagaaaataatatgaaaaaataaagaATCAACTACCGATACCATCGCTAAAGCGTATAGGGAGTTGAt                                                 >  2:3485758‑M1/50‑91 (MQ=255)

                                         aCTTTTAAAAAGGTTATTTATAAAATAAGTTTTAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGAt                                                 >  2:486494/1‑91 (MQ=255)

                                         aCTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGATGCTATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGAt                                                 >  2:4199387/1‑91 (MQ=255)

                                           ttttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTc                                               <  1:3899361/91‑1 (MQ=255)

                                           ttttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTc                                               <  1:3673436/91‑1 (MQ=255)

                                            tttAAGAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCt                                              <  1:2676601/91‑1 (MQ=255)

                                            tttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCt                                              <  2:1164413/91‑1 (MQ=255)

                                            tttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCt                                              <  2:3119476/91‑1 (MQ=255)

                                             ttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCtt                                             <  2:3259345/91‑1 (MQ=255)

                                             ttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATATTCATCAACTCCCGATACCATCGATAAAGAGTATAGGGAGTTGATTCtt                                             >  2:5677531/1‑91 (MQ=255)

                                              tAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCttt                                            <  2:1426830/91‑1 (MQ=255)

                                              tAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCttt                                            <  2:5463181/91‑1 (MQ=255)

                                                aaaaGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAt                                          >  1:4178415/1‑91 (MQ=255)

                                                 aaaGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAtt                                         >  1:4682576/1‑91 (MQ=255)

                                                  aaGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAttt                                        <  2:1006973/91‑1 (MQ=255)

                                                   aaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTCCCGATACCATCGCTa                                                                    <  2:2542513‑M1/23‑1 (MQ=255)

                                                     gTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAtttttt                                     <  1:56560/91‑1 (MQ=255)

                                                      ttatttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGTTACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTc                                    <  1:4570255/91‑1 (MQ=255)

                                                      ttatttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTc                                    >  1:3838791/1‑91 (MQ=255)

                                                      ttatttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTc                                    <  2:821495/91‑1 (MQ=255)

                                                          ttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCatat                                <  2:2879244/91‑1 (MQ=255)

                                                             taAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCAtattat                             <  1:104853/91‑1 (MQ=255)

                                                              aaaaTAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATattatt                            >  1:1577417/1‑91 (MQ=255)

                                                                 aTAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTttc                         >  2:451237/1‑91 (MQ=255)

                                                                   aaGTTATAAGAGGATATATGTTCATCAACTCCCGATATCATCGCTAATGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTttctt                       <  2:4690595/91‑1 (MQ=255)

                                                                    aGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTttcttc                      >  1:4241107/1‑91 (MQ=255)

                                                                    aGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTttcttc                      >  1:814851/1‑91 (MQ=255)

                                                                    aGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTttcttc                      >  1:5566085/1‑91 (MQ=255)

                                                                     gTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCa                     >  1:3554374/1‑91 (MQ=255)

                                                                     gTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCACTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCa                     >  1:4865797/1‑91 (MQ=255)

                                                                      ttATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCAt                    <  2:4748987/91‑1 (MQ=255)

                                                                        ataAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATaa                  >  2:1803811/1‑91 (MQ=255)

                                                                          aaGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAAc                <  2:898265/91‑1 (MQ=255)

                                                                          aaGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAAc                <  2:3020477/91‑1 (MQ=255)

                                                                            gagGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTg              <  1:64134/91‑1 (MQ=255)

                                                                            gagGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTg              >  1:3408432/1‑91 (MQ=255)

                                                                            gagGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTg              <  1:4037019/91‑1 (MQ=255)

                                                                             agGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTgg             <  1:5003586/91‑1 (MQ=255)

                                                                                atatatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGttt          <  1:1608276/91‑1 (MQ=255)

                                                                                atatatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGttt          <  1:2890784/91‑1 (MQ=255)

                                                                                 tatatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTtta         >  1:5152288/1‑91 (MQ=255)

                                                                                  atatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttat        >  2:5102952/1‑91 (MQ=255)

                                                                                   tatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttatt       >  1:4088774/1‑91 (MQ=255)

                                                                                   tatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGAGTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttatt       >  1:5704523/1‑91 (MQ=255)

                                                                                    atGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttatta      <  1:2055107/91‑1 (MQ=255)

                                                                                     tGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTtattat     >  1:11939/1‑91 (MQ=255)

                                                                                     tGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTtattat     >  1:5255094/1‑91 (MQ=255)

                                                                                      gTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATc    >  2:2295205/1‑91 (MQ=255)

                                                                                      gTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATc    <  2:29107/91‑1 (MQ=255)

                                                                                        tcatcaACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTTGTTTATTATCtt  >  2:146516/1‑91 (MQ=255)

                                                                                        tcatcaACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCtt  >  1:1901107/1‑91 (MQ=255)

                                                                                        tcatcaACTCCCGATACCATCGCTAAAGCGGATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCtt  >  2:2074049/1‑91 (MQ=255)

TTCTTTACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTT  >  USA300TCH1516_ALE/682132‑682310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.