BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 326023	286 (0.960)	15 (0.060)	12/142	NT	5.3%	intergenic (‑27/+41)	USA300HOU_RS01460/USA300HOU_RS01465	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 326041	286 (1.080)	15 (0.060)	12/142	NT	5.3%	intergenic (‑45/+23)	USA300HOU_RS01460/USA300HOU_RS01465	hypothetical protein/hypothetical protein

Only 100 of 401 total aligned reads displayed.

TCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAA  >  USA300TCH1516_ALE/325951‑326131

  aaTAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCca                                                                                          >  2:5152964‑M2/1‑89 (MQ=255)

  aaTAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCca                                                                                          >  1:1218347‑M2/1‑89 (MQ=255)

  aaTAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCca                                                                                          <  2:1420254‑M2/91‑3 (MQ=255)

  aaTAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATATAACCACACCACCAATGATAAGATTGTAATGTAAGGTGATCTTCca                                                                                          <  1:924183‑M2/91‑3 (MQ=255)

   aTAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCcaa                                                                                         <  1:5225025‑M2/91‑4 (MQ=255)

    tAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCcaat                                                                                        <  2:5021417‑M2/91‑5 (MQ=255)

       aaaaGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCcaatctt                                                                                     >  1:5406143‑M2/1‑84 (MQ=255)

       aaaaGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCcaatctt                                                                                     <  2:853129‑M2/91‑8 (MQ=255)

       aaaaGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCcaatctt                                                                                     <  1:5000930‑M2/91‑8 (MQ=255)

          agagTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAtt                                                                                  <  2:1360424/91‑1 (MQ=255)

          agagTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAtt                                                                                  <  2:3324008/91‑1 (MQ=255)

            agTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAtttt                                                                                <  2:1802939/91‑1 (MQ=255)

            agTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAtttt                                                                                <  2:3785333/91‑1 (MQ=255)

            agTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAtttt                                                                                >  1:2579499/1‑91 (MQ=255)

             gTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTAttttt                                                                               <  1:2328479/91‑1 (MQ=255)

               ggTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTtat                                                                             >  1:2807680/1‑91 (MQ=255)

                gTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTtata                                                                            >  2:2203540/1‑91 (MQ=255)

                   gATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATAttt                                                                         <  1:5485663/91‑1 (MQ=255)

                   gATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATAttt                                                                         >  1:4000233/1‑91 (MQ=255)

                   gATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATAttt                                                                         >  2:4841717/1‑91 (MQ=255)

                     tGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTa                                                                       <  1:1008618/91‑1 (MQ=255)

                       cGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGt                                                                     <  1:5321664/91‑1 (MQ=255)

                       cGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGt                                                                     <  2:4229362/91‑1 (MQ=255)

                        gAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGtt                                                                    >  1:4738430/1‑91 (MQ=255)

                         aaaCAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTa                                                                   >  1:479416/1‑91 (MQ=255)

                         aaaCAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTa                                                                   >  1:3711809/1‑91 (MQ=255)

                          aaCAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATACTTTAGTTAt                                                                  >  2:4318894/1‑91 (MQ=255)

                           aCAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTAtt                                                                 >  1:2440472/1‑91 (MQ=255)

                              aaTGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAg                                                              <  2:2469135/91‑1 (MQ=255)

                              aaTGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAg                                                              <  1:4222973/91‑1 (MQ=255)

                                tGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGAt                                                            >  2:689999/1‑91 (MQ=255)

                                  tATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGc                                                          >  1:1558672/1‑91 (MQ=255)

                                  tATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGc                                                          <  2:786418/91‑1 (MQ=255)

                                   aTTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGcc                                                         >  2:1543004/1‑91 (MQ=255)

                                   aTTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGcc                                                         >  2:3517055/1‑91 (MQ=255)

                                   aTTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGcc                                                         <  2:1666016/91‑1 (MQ=255)

                                   aTTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGcc                                                         <  2:3030209/91‑1 (MQ=255)

                                    ttGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCt                                                        <  2:2762596/91‑1 (MQ=255)

                                      gTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCttt                                                      >  2:1124504/1‑91 (MQ=255)

                                      gTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGAAAGATGACCTTCCAATCTTATTTTTATATTTTAGTGATTTAGATGCCttt                                                      >  1:4866557/1‑91 (MQ=255)

                                       ttttCATCTAACCACTTCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCtttt                                                     <  2:5580269/91‑1 (MQ=255)

                                        tttCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCttttt                                                    <  1:5448782/91‑1 (MQ=255)

                                             tttAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTaaaa                                               >  1:4383356/1‑91 (MQ=255)

                                             tttAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTaaaa                                               >  1:1794119/1‑91 (MQ=255)

                                                aaCCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTATTTAAAAtgg                                            >  2:4666355/1‑89 (MQ=255)

                                                  ccACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGAt                                          <  2:823034/91‑1 (MQ=255)

                                                  ccACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGAt                                          >  1:845034/1‑91 (MQ=255)

                                                      tcctccAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCaa                                      <  2:5804538/91‑1 (MQ=255)

                                                       cctccAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCaaa                                     <  1:295695/91‑1 (MQ=255)

                                                       cctccAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCaaa                                     <  1:631578/91‑1 (MQ=255)

                                                       cctccAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCaaa                                     <  2:2695073/91‑1 (MQ=255)

                                                        ctccAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAAc                                    <  1:2171046/91‑1 (MQ=255)

                                                         tccAATGATAAGATTGAAAGGCAAGATGACGTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACa                                   <  1:4517192/91‑1 (MQ=255)

                                                         tccAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTATATTTGATTCAAACa                                   >  2:5527995/1‑91 (MQ=255)

                                                         tccAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACa                                   >  2:1015603/1‑91 (MQ=255)

                                                         tccAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACa                                   >  1:2401449/1‑91 (MQ=255)

                                                         tccAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACa                                   >  1:3651091/1‑91 (MQ=255)

                                                          ccAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACAt                                  <  1:3113915/91‑1 (MQ=255)

                                                          ccAATGATAAGATCGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACAt                                  >  2:223571/1‑91 (MQ=255)

                                                             aTGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACAtttt                               >  2:231918/1‑91 (MQ=255)

                                                              tGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTg                              >  1:4627788/1‑91 (MQ=255)

                                                                aTAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgcc                            <  1:1047785/91‑1 (MQ=255)

                                                                aTAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgcc                            >  1:5118093/1‑91 (MQ=255)

                                                                 tAAGATTGAAAGGCAAGATGACCTTCcaatcttatcattggaggagtggttaaatgaaaacaatacatttgtttcgcatctaccactcttt                           <  1:1676574‑M2/91‑66 (MQ=255)

                                                                  aaGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgccgc                          <  2:2402881/91‑1 (MQ=255)

                                                                  aaGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgccgc                          <  2:4114631/91‑1 (MQ=255)

                                                                  aaGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgccgc                          >  2:5708810/1‑91 (MQ=255)

                                                                   aGATTGAAAGGCAAGATGACCTTCcaatcttatcattggaggagtggttaaatgaaaacaatacatttgtttcgcatctaccactcttttt                         <  2:4462612‑M2/91‑68 (MQ=255)

                                                                   aGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTgccgcc                         <  1:3347318/91‑1 (MQ=255)

                                                                     aTTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCa                                       >  2:2148491/1‑75 (MQ=255)

                                                                        gAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCAtttt                    >  2:3249555/1‑91 (MQ=255)

                                                                          aaGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCAtctttt                  >  2:5353191/1‑91 (MQ=255)

                                                                            ggCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTc                <  1:1358681/91‑1 (MQ=255)

                                                                             gCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCg               <  2:942519/91‑1 (MQ=255)

                                                                              cAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGa              <  1:2769769/91‑1 (MQ=255)

                                                                              cAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGa              >  1:725250/1‑91 (MQ=255)

                                                                               aaGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGAt             <  1:3253333/91‑1 (MQ=255)

                                                                               aaGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGAt             <  1:1955581/91‑1 (MQ=255)

                                                                                aGATGACCTTCcaatcttatcattggaggagtggttaaatgaaaacaatacatttgtttcgcatctaccactcttttttattgaaaaagtg            <  2:2604903‑M2/91‑81 (MQ=255)

                                                                                aGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGAtt            <  2:5455232/91‑1 (MQ=255)

                                                                                 gATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGAttt           <  1:3216650/91‑1 (MQ=255)

                                                                                  aTGACCTTCCAATCTTATTTTTATATTTTAGTTATTCAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATGTTTTTCGATTTc          >  2:3869286/1‑91 (MQ=255)

                                                                                   tGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCt         <  1:3505724/91‑1 (MQ=255)

                                                                                    gACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCtt        >  1:5779465/1‑91 (MQ=255)

                                                                                     aCCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCttt       >  2:2052904/1‑91 (MQ=255)

                                                                                     aCCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCttt       <  2:5070798/91‑1 (MQ=255)

                                                                                      ccTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCtttt      >  2:3132553/1‑91 (MQ=255)

                                                                                      ccTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCtttt      <  1:3016390/91‑1 (MQ=255)

                                                                                       cTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCttttt     <  1:4461662/91‑1 (MQ=255)

                                                                                       cTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCttttt     <  1:5048475/91‑1 (MQ=255)

                                                                                       cTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCttttt     <  1:5560636/91‑1 (MQ=255)

                                                                                       cTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCttttt     >  2:1914310/1‑91 (MQ=255)

                                                                                       cTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCttttt     >  1:1328138/1‑91 (MQ=255)

                                                                                        ttCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTc    >  1:4050592/1‑91 (MQ=255)

                                                                                        ttCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTc    <  2:4516983/91‑1 (MQ=255)

                                                                                        ttCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTc    <  1:2086291/91‑1 (MQ=255)

                                                                                         tCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCa   <  1:2035122/91‑1 (MQ=255)

                                                                                          ccaatcttatcattggaggagtggttaaatgaaaacaatacatttgtttcgcatctaccactcttttttattgaaaaagtggtatttgatt  >  1:3841509‑M2/1‑1 (MQ=255)

                                                                                          ccAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCaa  >  2:2922887/1‑91 (MQ=255)

                                                                                          ccAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCaa  >  2:3993966/1‑91 (MQ=255)

TCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGAAAGGCAAGATGACCTTCCAATCTTATTTTTATATTTTAGTTATTTAGATGCCTTTTTTAAAATTGATTCAAACATTTTGCCGCCATTTTTTTCGATTTCTTTTTCAA  >  USA300TCH1516_ALE/325951‑326131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.