| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 326023 | 286 (0.960) | 15 (0.060) | 12/142 | NT | 5.3% | intergenic (‑27/+41) | USA300HOU_RS01460/USA300HOU_RS01465 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 326041 | 286 (1.080) | intergenic (‑45/+23) | USA300HOU_RS01460/USA300HOU_RS01465 | hypothetical protein/hypothetical protein | |||||
TAAATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/325925‑326023‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataagattgGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTATTG < USA300TCH1516_ALE/326041‑325952 TAAATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGA > 2:3235036/1‑91TAAATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGA < 2:563254/91‑1 AAATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATTCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGAT < 1:4041188/91‑1 AAATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTTCTCCAATGAT > 1:3074831/1‑91 AAATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGAT < 1:45335/91‑1 AAATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGAT < 1:4420059/91‑1 AAATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGAT < 1:4015146/91‑1 AAATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGAT > 1:5570595/1‑91 AAATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGAT < 2:5097808/91‑1 AAATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGAT > 2:1955581/1‑91 AAATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGAAGCGAAACAAATGTATTGTTTTCATTTAACCACACCTCCAATGAT > 2:3594569/1‑91 AATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATA < 1:5761908/91‑1 AATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATA < 2:4468263/91‑1 AATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATA < 1:1568953/91‑1 AATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATA > 1:4931080/1‑91 ATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAA > 2:3668284/1‑91 ATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAA > 1:3490053/1‑91 ATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAA > 1:3490124/1‑91 ATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAA < 2:377565/91‑1 ATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAA > 1:3872159/1‑91 ATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATGGTTTTCATTTAACAACTCCTCCAATGATAA > 2:5795159/1‑91 ATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATAGTTTTCATTTAACCACTCCTCCAATGATAA > 2:5795205/1‑91 ATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTAGTAGATTCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAA > 2:3983372/1‑91 TAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCCATGATAAG > 2:5155004/1‑91 TAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAG < 2:3069475/91‑1 TAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGAGAAACAAATGTATTGTTTTCATTTAACCAATCCTCCACTGCTAAG > 2:4519688/1‑91 AGATAATCAATTACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGA < 1:5832113/91‑1 AGATAATCAATTACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTAATGTTTTCATTTAACCACTCCTCCAATGATAAGA < 1:5831978/91‑1 AGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTTCAATGATAAGA > 2:5862065/1‑91 AGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGA > 1:3771938/1‑91 AGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGA < 2:3006653/91‑1 AGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGA < 2:2001572/91‑1 AGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGA < 2:3980818/91‑1 AGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACAACTCCTCCAATGATAAGA > 1:5609905/1‑91 GATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGAT > 1:1732267/1‑91 GATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTAGTGTTTTCATTTAACCACTCCTCCAATGATAAGAT < 2:4913268/91‑1 GATAATCAAATACCACTTTTGCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGAT < 2:4913253/91‑1 ATAATCAAATACCACTTTTTTTTTTTTTATTAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATT > 2:130745/1‑91 ATAATCAAATACCACTTTTTCAATAAAAAAGTGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATT < 1:5443202/91‑1 ATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATT < 2:3655537/91‑1 ATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATT > 2:1551330/1‑91 AATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGG > 1:3841509/1‑91 ACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCAT < 2:294213/91‑1 CACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCT < 2:2604903/91‑1 TTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGC < 1:5046451/91‑1 CAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTC < 1:2547418/91‑1 ATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAA < 1:5418453/91‑1 TAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAAT < 2:3268247/91‑1 AAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAATC < 1:5450716/91‑1 AAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAATCT < 1:3817360/91‑1 AAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAATCT < 2:4462612/91‑1 AAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTA < 1:1676574/91‑1 AAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTA < 2:841110/91‑1 AGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATC < 2:3841509/91‑1 GATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGA < 1:2829347/91‑1 GATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGA < 1:2829788/91‑1 TTTGCATTTAACCACTCCTCCAATGTTAAGATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATA < 2:4933184/91‑1 AAGATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTT < 2:853129/91‑1 AAGATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTT < 1:5000930/91‑1 AAGATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTT < 1:5001155/91‑1 AAGATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTT > 1:5406143/1‑91 AAGATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTT < 1:5272386/91‑1 AGATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTT < 1:4276254/91‑1 AGATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTT > 1:1358657/1‑91 AGATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTT > 1:3138295/1‑91 GATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTT > 1:2977657/1‑91 GATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTT < 1:1326900/91‑1 GATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTT > 2:3120635/1‑91 GATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTGTTT > 1:130964/1‑91 ATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACCATACATTAGTTTGGAATATACAACTCTTTTTTA > 2:5510595/1‑91 ATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTA < 2:631578/91‑1 ATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTA < 2:5021417/91‑1 ATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTA > 2:450718/1‑91 ATTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTA < 2:3569475/91‑1 TTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTAT < 1:5225025/91‑1 TTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTAT < 2:4150892/91‑1 TTGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTAT < 2:3869949/91‑1 TGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTATT < 1:1958857/91‑1 TGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTATT > 1:1218347/1‑91 TGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTATT < 2:5162939/91‑1 TGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTATT < 1:3052452/91‑1 TGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTATT > 2:5152964/1‑91 TGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTATT > 2:5152566/1‑91 TGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTATT < 1:4803722/91‑1 TGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTATT < 1:5018257/91‑1 TGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTATT > 2:4292398/1‑91 TGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTATT < 2:1420254/91‑1 TGGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTAGCATCTACCACTCTTTTTTATT < 2:4461662/91‑1 TGGAAGATCACCTTACATTACAATCTTATCATTGGTGGTGTGGTTATATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTATT < 1:924183/91‑1 GGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTATTG < 1:5397151/91‑1 TAAATAGATAATCAAATACCACTTTTTCAATAAAAAAGAGTGGTAGATGCGAAACAAATGTATTGTTTTCATTTAACCACTCCTCCAATGATAAGATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/325925‑326023‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataagattgGAAGGTCATCTTGCCTTTCAATCTTATCATTGGAGGAGTGGTTAAATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTATTG < USA300TCH1516_ALE/326041‑325952 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |