| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2847743 | 223 (0.750) | 19 (0.080) | 9/132 | NT | 8.6% | intergenic (+52/+97) | yceI/USA300HOU_RS14590 | Protein YceI/Lactonase drp35 |
| ? | USA300TCH1516_ALE | = 2847754 | 219 (0.890) | intergenic (+63/+86) | yceI/USA300HOU_RS14590 | Protein YceI/Lactonase drp35 | |||||
Only 100 of 137 total aligned reads displayed.
AGGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2847640‑2847743‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatgccaactataCCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAATTCAGCTGA < USA300TCH1516_ALE/2847754‑2847665 AGGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGA < 2:2670498/91‑1AGGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGA < 2:54943/91‑1 GGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAA > 2:5401198/1‑91 GGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAA > 1:3486562/1‑91 GGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAA < 2:2575121/91‑1 GGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAA < 2:2260209/91‑1 GCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAA > 2:1578883/1‑91 GCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAA < 2:2740494/91‑1 GCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAA > 1:1097935/1‑91 CAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAAT < 1:3864325/91‑1 CAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAAT < 1:994507/91‑1 AAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATG < 1:1568106/91‑1 AAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATG < 2:57064/91‑1 AAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATG < 2:5705462/91‑1 AAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATG < 2:5705443/91‑1 AAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGC < 2:2462866/91‑1 AAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGC < 1:5278819/91‑1 AAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGC < 2:2378531/91‑1 AAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGC > 2:3637356/1‑91 AAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGC > 2:2108308/1‑91 AGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCC > 1:5249333/1‑91 AGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCC < 2:4939875/91‑1 GATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCA > 1:754011/1‑91 GATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCA < 1:2375119/91‑1 GATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCA < 2:5044864/91‑1 ATGTTAAATTCGAAGCATCAGTTGAATTCTCAATCTCAGAATAATCTCATTACATAATCCTCATTGTTTCTATATATATAAGAAATGCCta > 2:1467492/1‑89 ATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAA > 2:1800219/1‑91 ATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAA < 2:4770973/91‑1 TGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAAC < 1:4949400/91‑1 TGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAAC < 1:28397/91‑1 TGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAAC < 1:2737452/91‑1 TGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAAC > 1:5864417/1‑91 GTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACT < 1:1804797/91‑1 GTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACT < 2:3893679/91‑1 GTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACT > 2:4242655/1‑91 GTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACT < 2:3281933/91‑1 GTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACT < 1:5141498/91‑1 GTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACT > 1:1594512/1‑91 TTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTA > 2:4606393/1‑91 TTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTA > 2:3590019/1‑91 TTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTA > 1:4013066/1‑91 TTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTA > 2:5177675/1‑91 TAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTAT > 2:2546319/1‑91 TAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTAT < 1:1398272/91‑1 AAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATA < 2:2412921/91‑1 AAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATA > 1:2054660/1‑91 ATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATACCTAGGGATGA < 1:555294/91‑1 ATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATACCTAGGGATGA < 2:863384/91‑1 ATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATACCTAGGGATGA < 1:652022/91‑1 ATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATACCTAGGGATGA < 1:1737332/91‑1 ATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATACCTAGGGATGA < 2:3656062/91‑1 TCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATACCTAGGGATGAT < 1:3317447/91‑1 TCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATACCTAGGGATGAT < 1:52873/91‑1 TCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTCTTAATATATATACGAAATGCCAACTATACCTAGGGATGAT < 2:5250382/91‑1 AGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATACCTAGGGATGATAT < 2:5489269/91‑1 GCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATACCTAGGGATGATATA < 2:207152/91‑1 GCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATACCTAGGGATGATATA < 1:2387527/91‑1 GAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATACCTAGGGATGATATAGTT < 1:1491390/91‑1 AATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATAT < 1:766430/91‑1 ACAATCCTCATGGTGTTAATATATATACGAAATGCCAACTATACCTAGGGATGATATAGTTGGGATTTCGTATATATATTAAAACAATGAG < 2:2199893/91‑1 cAATGCCAACTATACCTAGGGATGATATAGTTGGCATTTAGTATATATATTAAAACAATGAGGAATGTGTAATGAGATTATTCTGAGATTG > 2:3009854/2‑91 AAATGCCAACTATACGTAGGGATGATATAGTTGGCATTTCGTATATATATTCAAACTATGAGGATTGTGTAATAAGATTATTGTGAGATTG > 2:3085076/1‑91 AAATGCCAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTG > 1:579966/1‑91 AAATGCCAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTG > 1:3875257/1‑91 AAATGCCAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTG > 2:2889356/1‑91 AAATGCCAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTG > 1:3637356/1‑91 AAATGCCAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTG < 2:3962362/91‑1 AAATGCCAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTG < 1:3155804/91‑1 AAATGCCAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTG > 2:1443073/1‑91 AAATGCCAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTG < 2:635080/91‑1 AAATGCCAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAAGGAGGATTGTGTAATGAGATTATTCTGAGATTG < 1:2844654/91‑1 AATGCCAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGA < 1:510868/91‑1 ATGCCAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAG > 1:3283068/1‑91 GCCAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAA < 2:1943504/91‑1 GCCAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAA > 1:1977369/1‑91 GCCAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAA > 1:1736115/1‑91 GCCAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAA > 2:3157371/1‑91 GCCAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAA > 1:4329444/1‑91 GCCAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAA < 1:5053542/91‑1 CCAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAAT > 1:110112/1‑91 CCAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAAT > 1:3993400/1‑91 CCAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAAT < 2:1478558/91‑1 CCAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAAT > 1:1833714/1‑91 CCAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAAT > 1:2188629/1‑91 CCAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAAT > 1:2189144/1‑91 CCAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAAT > 1:3168958/1‑91 CAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGCTTGTGTAATGAGATTATTCTGAGATTGAGAATT < 1:5813978/91‑1 CAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAATT > 2:440163/1‑91 CAACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAATT > 1:1390435/1‑91 AACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAATTC > 1:832235/1‑91 ACTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAATTCA > 1:1238503/1‑91 CTATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAATTCAG < 2:4811414/91‑1 tagACCTAGGGATGATATAGCTGGCATTTCGTATTTATATTAAAGCAATGAGGATTATGTAATGAGATTATTCTGAGATTGAGAATTCAGC < 2:4901501/88‑1 TATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAATTCAGC < 2:1782652/91‑1 ATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAATTCAGCT > 1:2727703/1‑91 ATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAATTCAGCT < 2:144733/91‑1 ATACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAATTCAGCT > 1:4981696/1‑91 TACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAATTCAGCTG < 1:1475975/91‑1 ACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAATTCAGCTGA < 1:2624775/91‑1 ACCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAATTCAGCTGA < 1:2987641/91‑1 AGGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2847640‑2847743‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatgccaactataCCTAGGGATGATATAGTTGGCATTTCGTATATATATTAAAACAATGAGGATTGTGTAATGAGATTATTCTGAGATTGAGAATTCAGCTGA < USA300TCH1516_ALE/2847754‑2847665 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |