New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 2847743223 (0.750)19 (0.080) 9/132 NT 8.6% intergenic (+52/+97) yceI/USA300HOU_RS14590 Protein YceI/Lactonase drp35
?USA300TCH1516_ALE = 2847754 219 (0.890)intergenic (+63/+86) yceI/USA300HOU_RS14590 Protein YceI/Lactonase drp35

Only 100 of 400 total aligned reads displayed.

ATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATT  >  USA300TCH1516_ALE/2847664‑2847844
                                                                                          |                                                                                          
acctgaatgaaatgcgcctaaaattagggtgaacagttagtgcttgttacacatgagttaaatgagAAATGCCAACTATATCATCCCTAgg                                                                                            >  2:5610615‑M1/67‑91 (MQ=255)
acctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAgg                                                                                            >  2:1049554‑M1/67‑91 (MQ=255)
  cAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGta                                                                                          <  1:1475975‑M2/91‑3 (MQ=255)
   aGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtat                                                                                         <  2:144733‑M2/91‑4 (MQ=255)
   aGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtat                                                                                         >  1:2727703‑M2/1‑88 (MQ=255)
   aGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtat                                                                                         >  1:4981696‑M2/1‑88 (MQ=255)
    gCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtata                                                                                        <  1:1243736‑M2/91‑5 (MQ=255)
     cTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtatag                                                                                       <  2:4811414‑M2/91‑6 (MQ=255)
       gAATTCTCAATATCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtatagtt                                                                                     <  2:5819991‑M2/91‑8 (MQ=255)
         aTTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtatagttgg                                                                                   >  1:3993400‑M2/1‑82 (MQ=255)
         aTTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtatagttgg                                                                                   >  1:2189144‑M2/1‑82 (MQ=255)
          ttCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtatagttggc                                                                                  >  1:1736115‑M2/1‑81 (MQ=255)
          ttCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtatagttggc                                                                                  >  1:1977369‑M2/1‑81 (MQ=255)
          atcgcggctaaaattaggatgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAGGTATAGTTGGc                                                                                  >  1:4913241‑M1/57‑91 (MQ=255)
              cAATCTCAGAATAATCTCATTACACATTCCTCATTGTTTTAATATATATACTAAATGCCAACTATATCATCCCTAGGtatagttggcattg                                                                              >  2:3009854‑M2/1‑77 (MQ=255)
              cAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtatagttggcattt                                                                              >  2:2889356‑M2/1‑77 (MQ=255)
              cAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtatagttggcattt                                                                              >  1:579966‑M2/1‑77 (MQ=255)
                   tcAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGt                                                                         <  1:1578883/91‑1 (MQ=255)
                     aGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGttt                                                                       <  1:4684844/91‑1 (MQ=255)
                     aGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGttt                                                                       <  2:115231/91‑1 (MQ=255)
                     aGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGttt                                                                       >  2:1387243/1‑91 (MQ=255)
                      gAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTa                                                                      >  2:616797/1‑91 (MQ=255)
                      gAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTa                                                                      >  1:1421496/1‑91 (MQ=255)
                      gAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTa                                                                      >  2:3693264/1‑91 (MQ=255)
                       aataatCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTaa                                                                     <  2:2073512/91‑1 (MQ=255)
                         taatCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACt                                                                   <  2:5024729/91‑1 (MQ=255)
                          aatCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTc                                                                  <  1:863014/91‑1 (MQ=255)
                          aatCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTc                                                                  >  1:2264727/1‑91 (MQ=255)
                           atCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCa                                                                 >  1:3537919/1‑91 (MQ=255)
                           atCTCATTACACAAACATCATTGTTTTAATATATATACGAAATGCCAACTATATCATCACTCGGTATAGTTGGCATTTTCCGTTTATCTCa                                                                 >  2:1506387/1‑91 (MQ=255)
                            tctcATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAt                                                                <  2:3546586/91‑1 (MQ=255)
                            tctcATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAt                                                                <  1:2546319/91‑1 (MQ=255)
                            tctcATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAt                                                                >  1:2320523/1‑91 (MQ=255)
                             ctcATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAtg                                                               <  1:4785945/91‑1 (MQ=255)
                             ctcATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAtg                                                               >  2:1736980/1‑91 (MQ=255)
                               cATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAtgtg                                                             >  2:5398516/1‑91 (MQ=255)
                                aTTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATgtgt                                                            <  2:155090/91‑1 (MQ=255)
                                aTTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATgtgt                                                            >  2:875012/1‑91 (MQ=255)
                                aTTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATgtgt                                                            >  2:4940542/1‑91 (MQ=255)
                                   acacAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACACATGTGTAAc                                                         <  2:3496838/91‑1 (MQ=255)
                                     acaATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACaa                                                       >  2:3234633/1‑91 (MQ=255)
                                      caATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAg                                                      <  2:461051/91‑1 (MQ=255)
                                        aTCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCa                                                    >  1:5702917/1‑91 (MQ=255)
                                        aTCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCa                                                    >  1:3122113/1‑91 (MQ=255)
                                        aTCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCa                                                    <  1:2444961/91‑1 (MQ=255)
                                         tCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCAc                                                   <  2:3963261/91‑1 (MQ=255)
                                          ccTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACt                                                  <  1:1120084/91‑1 (MQ=255)
                                          ccTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACt                                                  <  1:2682920/91‑1 (MQ=255)
                                           cTCATTGTTTTAATATATATACGAAATCCCAACTATATCATCCCTAGGtatagttggcatttcgtatatatattaacaccatgaggattgt                                                 <  2:2199893‑M2/91‑44 (MQ=255)
                                            tCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTaa                                                <  1:3638795/91‑1 (MQ=255)
                                             cATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAAc                                               >  2:4074587/1‑91 (MQ=255)
                                               ttGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTg                                             <  2:5127215/91‑1 (MQ=255)
                                                tGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGt                                            >  1:2057403/1‑91 (MQ=255)
                                                   tttAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCa                                         <  1:3334525/91‑1 (MQ=255)
                                                    ttAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCTTTTAACTCATGTGTAACAAGCACTAACTGTTCAc                                        >  2:2565101/1‑91 (MQ=255)
                                                    ttAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAc                                        <  2:947109/91‑1 (MQ=255)
                                                    ttAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAc                                        <  2:2456632/91‑1 (MQ=255)
                                                     tAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAcc                                       <  2:497083/91‑1 (MQ=255)
                                                     tAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAcc                                       >  2:4195032/1‑91 (MQ=255)
                                                     tAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAcc                                       >  2:3296594/1‑91 (MQ=255)
                                                         atatataCGAAATGCCAACTATATCATCCCTAGGtatagttggcatttcgtatatatattaaaacaatgaggattgtgtaatgagattatt                                   <  1:766430‑M2/91‑58 (MQ=255)
                                                                cGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGa                            >  1:3263124/1‑91 (MQ=255)
                                                                cGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGa                            <  2:3083618/91‑1 (MQ=255)
                                                                cGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGa                            <  1:4275688/91‑1 (MQ=255)
                                                                cGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGa                            >  2:635051/1‑91 (MQ=255)
                                                                cGAAATGCCAACGATACCGTCCCTAGGTATAGTTGGCCTTTTTCGGTTACCTCATGTGTAACAAGCACTAACTGTTCATCCTCATTTgaga                            <  2:4540503/91‑1 (MQ=255)
                                                                  AAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACg                          >  2:4398371‑M1/1‑91 (MQ=255)
                                                                  AAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACg                          <  2:5284146‑M1/91‑1 (MQ=255)
                                                                   AATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGc                         >  1:5575297‑M1/1‑91 (MQ=255)
                                                                    ATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCTTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGcc                        <  2:2687867‑M1/91‑1 (MQ=255)
                                                                     TGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCt                       >  2:1469651‑M1/1‑91 (MQ=255)
                                                                      tCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCtt                      >  1:1515390‑M1/2‑91 (MQ=255)
                                                                      GCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCtt                      <  2:702628‑M1/91‑1 (MQ=255)
                                                                       CCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCttt                     <  1:2951993‑M1/91‑1 (MQ=255)
                                                                        CAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttc                    <  1:1011067‑M1/91‑1 (MQ=255)
                                                                         AACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttca                   >  1:1800219‑M1/1‑91 (MQ=255)
                                                                         AACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttca                   >  1:4435954‑M1/1‑91 (MQ=255)
                                                                         AACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttca                   <  2:2806041‑M1/91‑1 (MQ=255)
                                                                          ACTATATCATCCCTAGGTATAGTTGGCATTTTTTTTTTTTTTTTTGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttcat                  <  2:783279‑M1/91‑1 (MQ=255)
                                                                            TATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttcattc                >  1:4544591‑M1/1‑91 (MQ=255)
                                                                             atatCATCCCTAGGtatagttggcatttcgtatatatattaaaacaatgaggattgtgtaatgagattattctgagattgagaattcagct               <  2:5489269‑M2/91‑78 (MQ=255)
                                                                               atcatcCCTAGGtatagttggcatttcgtatatatattaagacaatgaggattgtgtaatgagattattctgagattgagaattcagctga             <  2:2332593‑M2/91‑80 (MQ=255)
                                                                               atcatcCCTAGGtatagttggcatttcgtatatatattaaaacaatgaggattgtgtaatgagattattctgagattgagaattcagctga             <  1:52873‑M2/91‑80 (MQ=255)
                                                                               ATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAgg             >  2:3755072‑M1/1‑91 (MQ=255)
                                                                                tcatcCCTAGGtatagttggcatttcgtatatatattaaaacaatgaggattgtgtaatgagattattctgagattgagaattcagctgat            <  1:1479743‑M2/91‑81 (MQ=255)
                                                                                tcatcCCTAGGtatagttggcatttcgtatatatattaaaacaatgaggattgtgtaatgagattattctgagattgagaattcagctgat            <  1:652022‑M2/91‑81 (MQ=255)
                                                                                 catcCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCaggta           <  2:3140727/91‑1 (MQ=255)
                                                                                   tcCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCaggtagg         <  1:2845082/91‑1 (MQ=255)
                                                                                   tcCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCaggtagg         <  2:1978280/91‑1 (MQ=255)
                                                                                   tcCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCaggtagg         >  2:1897417/1‑91 (MQ=255)
                                                                                    cccTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCaggtaggt        >  2:4685167/1‑91 (MQ=255)
                                                                                     ccTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTc       <  2:4743536/91‑1 (MQ=255)
                                                                                     ccTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTc       <  1:5024745/91‑1 (MQ=255)
                                                                                     ccTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTc       <  1:5068896/91‑1 (MQ=255)
                                                                                      cTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCt      <  1:4226721/91‑1 (MQ=255)
                                                                                      cTACGTATAGTTGGCATTTTTCGTTTAACTCGTGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCt      <  1:5437074/91‑1 (MQ=255)
                                                                                       tAGGTATAGTTGGCATTTTTCGTTTAACTTATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCtt     <  1:5177675/91‑1 (MQ=255)
                                                                                         ggTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTAt   >  1:3918470/1‑91 (MQ=255)
                                                                                          gTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTAtt  >  2:3437332/1‑91 (MQ=255)
                                                                                          gTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTAtt  >  2:1818338/1‑91 (MQ=255)
                                                                                          |                                                                                          
ATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATT  >  USA300TCH1516_ALE/2847664‑2847844

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.