| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2847743 | 223 (0.750) | 19 (0.080) | 9/132 | NT | 8.6% | intergenic (+52/+97) | yceI/USA300HOU_RS14590 | Protein YceI/Lactonase drp35 |
| ? | USA300TCH1516_ALE | = 2847754 | 219 (0.890) | intergenic (+63/+86) | yceI/USA300HOU_RS14590 | Protein YceI/Lactonase drp35 | |||||
Only 100 of 463 total aligned reads displayed.
AAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGG > USA300TCH1516_ALE/2847653‑2847833 | caataagacctacctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACtata > 2:4790034‑M1/78‑91 (MQ=255)aaaTTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATA > 1:390239‑M1/1‑91 (MQ=255) aaTTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTatat < 2:3229330/91‑1 (MQ=255) aaTTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTatat < 2:3266445/91‑1 (MQ=255) aaTTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTatat < 2:3953013/91‑1 (MQ=255) aTTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATatc > 2:4226238/1‑91 (MQ=255) aTTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATatc < 2:3983511/91‑1 (MQ=255) tCGAAGCATCAGCTGGATTCTCAATCTCAGAATAATCTCATTACATAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATatcat < 2:5753685/91‑1 (MQ=255) cGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATatcatc > 1:5327059/1‑91 (MQ=255) aaGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATccc > 1:5649854/1‑91 (MQ=255) aaGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATccc > 1:3180624/1‑91 (MQ=255) aaGCATCAGCTGAATTCTCAATCACAGAATAATCTCATTACACAATCCTCATTGTTGTAATATATATACGAAATGCCAACTATATCATccc > 2:4636659/1‑91 (MQ=255) gCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTa < 2:141715/91‑1 (MQ=255) aTCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATAcctagggatga < 1:652022‑M1/91‑12 (MQ=255) tCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGt < 1:2624775‑M2/91‑2 (MQ=255) ctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAGGta > 2:2166558‑M1/65‑91 (MQ=255) aGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtat < 2:5316338‑M2/91‑4 (MQ=255) tGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtatagt > 1:1238503‑M2/1‑85 (MQ=255) aTTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtatagttgg < 2:1478558‑M2/91‑10 (MQ=255) aTTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtatagttgg > 1:110112‑M2/1‑82 (MQ=255) aTTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtatagttgg > 1:2189144‑M2/1‑82 (MQ=255) aTTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtatagttgg > 1:1833714‑M2/1‑82 (MQ=255) ttCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtatagttggc > 1:1977369‑M2/1‑81 (MQ=255) ttCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtatagttggc < 1:5053542‑M2/91‑11 (MQ=255) atcgcggctaaaattaggatgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAGGTATAGTTGGc > 1:4913241‑M1/57‑91 (MQ=255) ggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAGGTATAGTTGGCAt > 2:4554678‑M1/55‑91 (MQ=255) cAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtatagttggcattt > 2:2889356‑M2/1‑77 (MQ=255) aaTCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATCCCAACTATATCATCCCTAGGTATAGTTGGCCtttt > 2:5511761/1‑91 (MQ=255) ctcAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCg < 2:629757/91‑1 (MQ=255) tcAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGt < 1:1578883/91‑1 (MQ=255) aGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGttt < 1:4684844/91‑1 (MQ=255) aGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGttt < 2:115231/91‑1 (MQ=255) gAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTa < 1:20574/91‑1 (MQ=255) aataatCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATAcctagggatgatatagttggcatttcgtatatat < 1:766430‑M1/91‑35 (MQ=255) taatCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACt < 2:5024729/91‑1 (MQ=255) aatCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTc < 1:863014/91‑1 (MQ=255) aatCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTc > 1:2264727/1‑91 (MQ=255) tctcATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAt < 1:4543081/91‑1 (MQ=255) tctcATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAt < 2:3546586/91‑1 (MQ=255) tctcATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAt > 2:4823291/1‑91 (MQ=255) tctcATTACACAATCCTCATTGCTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAt > 2:4463323/1‑91 (MQ=255) ctcATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAtg < 1:4785945/91‑1 (MQ=255) ctcATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAtg < 1:3737166/91‑1 (MQ=255) ctcATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAtg > 2:1736980/1‑91 (MQ=255) aTTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATgtgt < 1:4997495/91‑1 (MQ=255) aTTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATgtgt > 2:4940542/1‑91 (MQ=255) aTTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATgtgt > 2:856291/1‑91 (MQ=255) ttACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTa < 1:3621533/91‑1 (MQ=255) acacAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAAc < 2:3386924/91‑1 (MQ=255) acacAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACACATGTGTAAc < 2:3496838/91‑1 (MQ=255) cacaATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACa < 2:2269831/91‑1 (MQ=255) acaATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACaa > 1:5458998/1‑91 (MQ=255) aTCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCa < 2:2502008/91‑1 (MQ=255) aTCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCa < 2:94407/91‑1 (MQ=255) aTCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCa < 1:2444961/91‑1 (MQ=255) aTCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCa > 1:3122113/1‑91 (MQ=255) cTCATTGTTTTAGAATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTa < 2:2394232/91‑1 (MQ=255) cTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTa < 2:720738/91‑1 (MQ=255) tCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTaa < 2:3094304/91‑1 (MQ=255) aTTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACt < 1:5776752/91‑1 (MQ=255) tttAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCa < 1:3334525/91‑1 (MQ=255) ttAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAc > 2:2565150/1‑91 (MQ=255) tAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAcc < 1:2693879/91‑1 (MQ=255) tAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAcc < 2:497083/91‑1 (MQ=255) aaTATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAccc < 2:1026594/91‑1 (MQ=255) aaTATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAccc < 2:594567/91‑1 (MQ=255) tatataCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAAt < 1:5140474/91‑1 (MQ=255) atataCGAAATGCCAACTATATCATCCCTAGGtatagttggcatttcgtatatatattaaaacaatgaggattgtgtaatgagattattct < 1:1773008‑M2/91‑60 (MQ=255) tataCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAAttt < 2:3707209/91‑1 (MQ=255) aCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAg < 2:1823509/91‑1 (MQ=255) cGAAGTGCCAACTATACCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGa < 2:4394436/91‑1 (MQ=255) cGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGa < 2:3083618/91‑1 (MQ=255) cGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGa < 1:4275688/91‑1 (MQ=255) caatGCCAACTATAcctagggatgatatagttggcatttagtatatatattaaaacaatgaggaatgtgtaatgagattattctgagattg > 2:3009854‑M1/2‑14 (MQ=255) aaaTGCCAACTATAcctagggatgatatagttggcatttcgtatatatattaaaacaatgaggattgtgtaatgagattattctgagattg < 2:635080‑M1/91‑78 (MQ=255) aaaTGCCAACTATAcctagggatgatatagttggcatttcgtatatatattaaaacaaggaggattgtgtaatgagattattctgagattg < 1:2844654‑M1/91‑78 (MQ=255) aTGCCAACTATAcctagggatgatatagttggcatttcgtatatatattaaaacaatgaggattgtgtaatgagattattctgagattgag > 1:3303667‑M1/1‑12 (MQ=255) ATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGcc < 1:1381744‑M1/91‑1 (MQ=255) gCCAACTATAcctagggatgatatagttggcatttcgtatatatattaaaacaatgaggattgtgtaatgagattattctgagattgagaa > 1:1736115‑M1/1‑10 (MQ=255) gCCAACTATAcctagggatgatatagttggcatttcgtatatatattaaaacaatgaggattgtgtaatgagattattctgagattgagaa < 2:1943504‑M1/91‑82 (MQ=255) gCCAACTATAcctagggatgatatagttggcatttcgtatatatattaaaacaatgaggattgtgtaatgagattattctgagattgagaa > 2:5135284‑M1/1‑10 (MQ=255) GCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCtt > 1:2487417‑M1/1‑91 (MQ=255) ccAACTATAcctagggatgatatagttggcatttcgtatatatattaaaacaatgaggattgtgtaatgagattattctgagattgagaat > 1:3993400‑M1/1‑9 (MQ=255) CAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttc < 1:1011067‑M1/91‑1 (MQ=255) CAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttc < 1:4120729‑M1/91‑1 (MQ=255) aaCTATATCATCCCTAGGtatagttggcatttcgtatatatattaaaacaatgaggattgtgtaatgagattattctgagattgagaattc < 1:1491390‑M2/91‑74 (MQ=255) AACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttca < 2:2806041‑M1/91‑1 (MQ=255) AACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttca < 1:1478823‑M1/91‑1 (MQ=255) AACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttca > 1:4435954‑M1/1‑91 (MQ=255) ACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttcat < 2:1544348‑M1/91‑1 (MQ=255) CTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttcatt < 2:4698576‑M1/91‑1 (MQ=255) tataTCATCCCTAGGtatagttggcatttcgtatatatattaaaacaatgaggattgtgtaatgagattattctgagattgagaattcagc < 2:207152‑M2/91‑77 (MQ=255) atacctagggatgatatagttggcatttcgtatatatattaaaacaatgaggattgtgtaatgagattattctgagattgagaattcagct < 2:144733‑M1/91‑89 (MQ=255) TATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAg > 2:4084612‑M1/1‑91 (MQ=255) TATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAg < 1:2326704‑M1/91‑1 (MQ=255) atcatcCCTAGGtatagttggcatttcgtatatatattaagacaatgaggattgtgtaatgagattattctgagattgagaattcagctga < 2:5250382‑M2/91‑80 (MQ=255) atcatcCCTAGGtatagttggcatttcgtatatatattaaaccaatgaggattgtgtaatgagattattctgagattgagaattcagctga < 1:5807861‑M2/91‑80 (MQ=255) acctagggatgatatagttggcatttcgtatatatattaaaacaatgaggattgtgtaatgagattattctgagattgagaattcagctga < 1:2987641‑M1/91‑91 (MQ=255) ATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAgg < 1:1451530‑M1/91‑1 (MQ=255) ATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAgg > 2:1451530‑M1/1‑91 (MQ=255) | AAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGG > USA300TCH1516_ALE/2847653‑2847833 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |