| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1435396 | 272 (0.910) | 14 (0.050) | 9/140 | NT | 5.5% | intergenic (+33/‑110) | dapH/yxeP_3 | 2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑acetyltransferase/putative hydrolase YxeP |
| ? | USA300TCH1516_ALE | = 1435406 | 242 (0.930) | intergenic (+43/‑100) | dapH/yxeP_3 | 2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑acetyltransferase/putative hydrolase YxeP | |||||
GCAAGCTTCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1435297‑1435396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggttgagaCATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTTTAGTAT < USA300TCH1516_ALE/1435406‑1435317 GCAAGCTTCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCA > 1:217986/1‑91GCAAGCTTCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCA < 2:4312893/91‑1GCAAGCTTCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCA < 1:4129425/91‑1GCAAGCTTCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAAAGTATAATAATTTCA > 2:3036311/1‑91 CAAGCTTCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAA < 1:5362746/91‑1 CAAGCTTCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAA > 2:1643762/1‑91 AGCTTCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGG < 2:5228/91‑1 AGCTTCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGG < 1:5522725/91‑1 AGCTTCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGG < 1:1377909/91‑1 AGCTTCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGG > 1:137958/1‑91 AGCTTCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGG < 1:5523055/91‑1 AGCTTCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGG < 2:3094996/91‑1 GCTTCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGT > 2:3161927/1‑91 GCTTCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGT > 2:2981008/1‑91 GCTTCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGT > 1:975809/1‑91 GCTTCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGT > 1:4210726/1‑91 GCTTCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGT > 2:3857276/1‑91 CTTCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTT < 1:2608665/91‑1 CTTCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTT > 1:2268979/1‑91 CTTCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTT > 1:5189782/1‑91 CTTCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTT > 2:496679/1‑91 TTCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTG > 2:43577/1‑91 TCTGGAGTACTAGATACTAAATAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACGAGTGACGTCAACGTATAATAATTTCAAGGTTGA < 2:1990264/91‑1 TCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGA < 1:4021618/91‑1 TCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGA < 2:5059910/91‑1 CTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAG > 2:2494365/1‑91 TGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGA < 1:5857830/91‑1 TGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGA < 1:1560568/91‑1 AAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGACATAATCG < 1:5355266/91‑1 AGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGACATAATCGT < 2:1924961/91‑1 AGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGACATAATCGT < 2:2246100/91‑1 GATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGACATAATCGTA < 1:563317/91‑1 GATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGACATAATCGTA < 1:4470967/91‑1 GATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGACATAATCGTA < 1:4470925/91‑1 GATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGACATAATCGTA < 2:4365962/91‑1 ATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGACATAATCGTAT < 1:4242771/91‑1 TAAGAAAGAGATTGTAGCAGCATTAAGAAAAGTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGACATAATCGTATCTCA < 1:5450908/91‑1 TAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGACATAATCGTATCTCA < 1:5451233/91‑1 AAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGACATAATCGTATCTCAACC < 2:4180004/91‑1 TGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCAT > 1:1131138/1‑91 ACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATG > 2:5500120/1‑91 TATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTG > 1:1360735/1‑91 AAGGTTGAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTT > 2:238798/1‑91 AGGTTGAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTT > 1:289095/1‑91 AGGTTGAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTT < 2:534197/91‑1 AGGTTGAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTT > 1:1076829/1‑91 AGGTTGAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTT < 2:2929633/91‑1 AGGTTGAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTT > 2:4650481/1‑91 AGGTTGAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTC > 1:3211629/1‑51 AGGTTGAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTC < 2:3211629/51‑1 GGTTGAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTT > 2:4209096/1‑91 GGTTGAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTT > 1:1774990/1‑91 GTTGAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTT < 2:180231/91‑1 GTTGAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTT < 1:1980709/91‑1 GTTGAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTT > 2:3716099/1‑91 GTTGAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTT < 1:3568250/91‑1 GTTGAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTT < 1:4916220/91‑1 GTTGAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTT > 2:9818/1‑91 TTGAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTTT > 1:496679/1‑91 TTGAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTTT > 2:2944108/1‑91 GAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTTTAG > 2:1869621/1‑91 GAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTTTAG > 2:985308/1‑91 GAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTTTAG > 1:2437738/1‑91 GAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTTTAG > 2:4239016/1‑91 GAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTTTAG < 2:3981487/91‑1 GAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTTTAG < 2:2652840/91‑1 GAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTTTAG < 1:647420/91‑1 GAGACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTTTAG < 1:985308/91‑1 GAGACATAATCGTATATCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTTTAG < 2:4509256/91‑1 GACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTTTAGTA < 1:4852166/91‑1 ACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTTTAGTAT < 2:4017381/91‑1 ACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTTTAGTAT < 2:4014831/91‑1 ACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTTTAGTAT < 1:1496043/91‑1 ACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTTTAGTAT < 2:251616/91‑1 ACATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTTTAGTAT < 1:5473106/91‑1 ACATAATCGTAGCTCAACCTTGAAATTATTATACGTTGACGGCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTTTAGTAT < 2:5846587/91‑1 GCAAGCTTCTGAAGTACAAGATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1435297‑1435396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggttgagaCATAATCGTATCTCAACCTTGAAATTATTATACGTTGACGTCACTAGTCATTCAGTTTTCTTAATGCTGCTACAATCTCTTTTTTAGTAT < USA300TCH1516_ALE/1435406‑1435317 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |