BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1435396	272 (0.910)	14 (0.050)	9/140	NT	5.5%	intergenic (+33/‑110)	dapH/yxeP_3	2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑acetyltransferase/putative hydrolase YxeP
*	?	USA300TCH1516_ALE	= 1435406	242 (0.930)	14 (0.050)	9/140	NT	5.5%	intergenic (+43/‑100)	dapH/yxeP_3	2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑acetyltransferase/putative hydrolase YxeP

Only 100 of 333 total aligned reads displayed.

GATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAACACAAAGGA  >  USA300TCH1516_ALE/1435316‑1435496

gATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATg                                                                                            >  1:2212802/1‑91 (MQ=255)

 aTACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGCCGTCAACGTATAATAATTTCAAGGTTGAGCTACGATTATGt                                                                                           <  2:5846587‑M2/91‑2 (MQ=255)

 aTACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGt                                                                                           <  2:4017381‑M2/91‑2 (MQ=255)

    cTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGtctc                                                                                        >  2:4239016‑M2/1‑87 (MQ=255)

    cTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGtctc                                                                                        <  2:3981487‑M2/91‑5 (MQ=255)

    cTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGtctc                                                                                        >  1:2437738‑M2/1‑87 (MQ=255)

      aaaaaaGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGtctcaa                                                                                      >  2:2944108‑M2/1‑85 (MQ=255)

       aaaaaGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGtctcaac                                                                                     <  1:1980709‑M2/91‑8 (MQ=255)

         aaaGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGtctcaacct                                                                                   >  2:4650481‑M2/1‑82 (MQ=255)

         aaaGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGtctcaacct                                                                                   >  1:289095‑M2/1‑82 (MQ=255)

           agagATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTa                                                                                 <  1:4698970/91‑1 (MQ=255)

              gaTTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTg                                                                              <  1:607081/91‑1 (MQ=255)

              gaTTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTg                                                                              <  2:3806856/91‑1 (MQ=255)

              gaTTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTg                                                                              >  1:3554619/1‑91 (MQ=255)

              gaTTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTg                                                                              <  1:304310/91‑1 (MQ=255)

              gaTTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTg                                                                              >  1:767462/1‑91 (MQ=255)

               aTTGTAGCAGCATTAAGAAAGCTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGt                                                                             <  1:2728860/91‑1 (MQ=255)

               aTTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGt                                                                             >  2:2416980/1‑91 (MQ=255)

               aTTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGt                                                                             >  2:2699585/1‑91 (MQ=255)

                ttGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGtt                                                                            <  2:2207145/91‑1 (MQ=255)

                ttGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGtt                                                                            <  1:4628529/91‑1 (MQ=255)

                   tAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAg                                                                         <  1:5476990/91‑1 (MQ=255)

                     gcagcaTTAAGAGAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCa                                                                       <  2:3769581/91‑1 (MQ=255)

                     gcagcaTTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCa                                                                       <  2:1563193/91‑1 (MQ=255)

                      cagcaTTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCAt                                                                      <  2:2601257/91‑1 (MQ=255)

                      cagcaTTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCAt                                                                      >  1:4328799/1‑91 (MQ=255)

                      cagcaTTAAGAAAACTGAATGACTACTGACGTCAACGTATAATAATTTCGAGATTGAGATACGATTATGTCTCAACCTTATTGTTTAGCAt                                                                      <  2:5422930/91‑1 (MQ=255)

                       agcaTTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCAtt                                                                     >  1:1660944/1‑91 (MQ=255)

                        gcaTTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTg                                                                    >  1:4860737/1‑91 (MQ=255)

                         caTTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGa                                                                   >  1:1463123/1‑91 (MQ=255)

                         caTTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGa                                                                   <  2:249053/91‑1 (MQ=255)

                         caTTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGa                                                                   <  1:2345828/91‑1 (MQ=255)

                         caTTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGACATAATCGTAtctcaaccttgaaattattatacgt                                                                   >  2:5500120‑M2/1‑66 (MQ=255)

                          aTTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGaa                                                                  <  1:1331354/91‑1 (MQ=255)

                              aGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATaaa                                                              >  2:1929887/1‑91 (MQ=255)

                               gAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAAc                                                             >  1:3471860/1‑91 (MQ=255)

                                aaaaCTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACt                                                            >  1:5207666/1‑91 (MQ=255)

                                  aaCTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTa                                                          >  2:1900807/1‑91 (MQ=255)

                                    cTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTCTGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATg                                                        >  1:4845678/1‑91 (MQ=255)

                                    cTGAATGACTAGTGACGTCAACCTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATg                                                        <  2:5777893/91‑1 (MQ=255)

                                      gAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGAt                                                      <  1:4161274/91‑1 (MQ=255)

                                       aaTGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATc                                                     <  1:2020194/91‑1 (MQ=255)

                                        aTGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATca                                                    <  1:5431932/91‑1 (MQ=255)

                                         tGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATcac                                                   >  2:3069195/1‑91 (MQ=255)

                                         tGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATcac                                                   <  1:3893715/91‑1 (MQ=255)

                                         tGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATcac                                                   >  1:1594241/1‑91 (MQ=255)

                                         tGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATcac                                                   >  1:3868316/1‑91 (MQ=255)

                                          gACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATcaca                                                  <  1:1214937/91‑1 (MQ=255)

                                          gACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATcaca                                                  <  2:1882139/91‑1 (MQ=255)

                                           aCTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATcacat                                                 >  2:4194344/1‑90 (MQ=255)

                                           aCTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACaa                                                 >  2:523436/1‑91 (MQ=255)

                                           aCTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACaa                                                 >  2:1526603/1‑91 (MQ=255)

                                              aGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTGTGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAAtt                                              <  2:1790650/91‑1 (MQ=255)

                                              aGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAAtt                                              >  1:5582860/1‑91 (MQ=255)

                                                tGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTc                                            >  2:1271261/1‑91 (MQ=255)

                                                 gACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGtctcaacct                                                                                   >  1:3211629‑M2/1‑42 (MQ=255)

                                                 gACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGtctcaacct                                                                                   <  2:3211629‑M2/51‑10 (MQ=255)

                                                  gcGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGa                                          <  2:529262/90‑1 (MQ=255)

                                                  aCGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGa                                          <  2:2333099/91‑1 (MQ=255)

                                                  aCGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGa                                          <  1:182571/91‑1 (MQ=255)

                                                    gTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTCGCATTGAAGAAACTTATGATCACAAATTTCGaca                                        <  2:4916220/91‑3 (MQ=255)

                                                     tCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAAt                                       >  1:1900886/1‑91 (MQ=255)

                                                      cAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATa                                      >  1:1499423/1‑91 (MQ=255)

                                                        aCGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACg                                    <  2:1127791/91‑1 (MQ=255)

                                                        aCGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACg                                    <  1:3706384/91‑1 (MQ=255)

                                                          gTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGtt                                  <  1:534197/91‑1 (MQ=255)

                                                          gTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGtt                                  >  1:1771799/1‑91 (MQ=255)

                                                            ataataATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTac                                <  1:5030915/91‑1 (MQ=255)

                                                            ataataATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTac                                <  2:4472824/91‑1 (MQ=255)

                                                             taataaTTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTaca                               <  2:3474998/91‑1 (MQ=255)

                                                             taataaTTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTaca                               >  1:5236433/1‑91 (MQ=255)

                                                              aataatTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTacac                              >  1:4262881/1‑91 (MQ=255)

                                                                    ttCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTta                        >  2:3642087/1‑91 (MQ=255)

                                                                     tCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTtat                       <  2:2516285/91‑1 (MQ=255)

                                                                      cAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTtata                      <  2:4967275/91‑1 (MQ=255)

                                                                      cAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTtata                      <  1:4434384/91‑1 (MQ=255)

                                                                      cAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTtata                      <  2:3396152/91‑1 (MQ=255)

                                                                      cAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTAACACTATTtata                      >  2:3901951/1‑91 (MQ=255)

                                                                       aaGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTtatat                     <  2:5087544/91‑1 (MQ=255)

                                                                        aGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTtatata                    <  1:5760556/91‑1 (MQ=255)

                                                                        aGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTtatata                    <  1:4036938/91‑1 (MQ=255)

                                                                         ggTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAg                   <  2:2872746/91‑1 (MQ=255)

                                                                         ggTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAg                   <  2:4075273/91‑1 (MQ=255)

                                                                         ggTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAg                   >  2:2286401/1‑91 (MQ=255)

                                                                         ggTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAg                   >  1:4403613/1‑91 (MQ=255)

                                                                         ggTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAg                   <  1:2819869/91‑1 (MQ=255)

                                                                          gTTGAGATACGGTTATGTCTCCACATTATTGATTGGCATTAAATAGACTTATGATCACACATTTCGTAAGACGTTACACTATTTATGTAga                  >  2:864542/1‑90 (MQ=255)

                                                                            tGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTaa                >  1:4000680/1‑91 (MQ=255)

                                                                            tGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTaa                <  1:2510242/91‑1 (MQ=255)

                                                                                 tACGATTATGtctcaaccttgaaattattatacgttgacgtcactagtcattcagttttcttaatgctgctacaatctcttttttagtatc           <  2:4365962‑M2/91‑82 (MQ=255)

                                                                                 tACGATTATGtctcaaccttgaaattattatacgttgacgtcactagtcattcagttttcttaatgctgctacaatctcttttttagtatc           <  1:4470967‑M2/91‑82 (MQ=255)

                                                                                  aCGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAac          <  1:914457/91‑1 (MQ=255)

                                                                                  aCGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAac          <  2:5181792/91‑1 (MQ=255)

                                                                                  aCGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAac          <  1:4951311/91‑1 (MQ=255)

                                                                                  aCGATTACGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAac          <  2:4533557/91‑1 (MQ=255)

                                                                                   cGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAaca         >  1:1045419/1‑91 (MQ=255)

                                                                                    gATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAacac        <  2:123536/91‑1 (MQ=255)

                                                                                      ttATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTGAACACaa      <  2:5373845/91‑1 (MQ=255)

                                                                                        aTGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAACACAAAg    >  1:2587505/1‑91 (MQ=255)

                                                                                        aTGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAACACAAAg    >  1:1082654/1‑91 (MQ=255)

GATACTAAAAAAGAGATTGTAGCAGCATTAAGAAAACTGAATGACTAGTGACGTCAACGTATAATAATTTCAAGGTTGAGATACGATTATGTCTCAACCTTATTGTTTAGCATTGAATAAACTTATGATCACAAATTTCGAAATACGTTACACTATTTATATAGTAATTTAACACAAAGGA  >  USA300TCH1516_ALE/1435316‑1435496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.