BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	933397 =	248 (0.830)	18 (0.070)	14/130	NT	9.2%	intergenic (+14/+45)	USA300HOU_RS04645/yjlD	hypothetical protein/NADH dehydrogenase‑like protein YjlD
*	?	USA300TCH1516_ALE	933437 =	155 (0.640)	18 (0.070)	14/130	NT	9.2%	intergenic (+54/+5)	USA300HOU_RS04645/yjlD	hypothetical protein/NADH dehydrogenase‑like protein YjlD

Only 100 of 304 total aligned reads displayed.

CACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGTTACAGTGCGGTCCATGATAT  >  USA300TCH1516_ALE/933347‑933527

cACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCttttt                                                                                            <  1:33919/91‑1 (MQ=255)

cACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCttttt                                                                                            >  1:5668046/1‑91 (MQ=255)

 aCTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCCtttta                                                                                           >  2:14832/1‑91 (MQ=255)

  cTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTttttaa                                                                                          >  1:5530078/1‑91 (MQ=255)

    cGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTttttaatt                                                                                        <  1:5310112/91‑1 (MQ=255)

    cGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTttttaatt                                                                                        <  1:2079407/91‑1 (MQ=255)

    cGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTttttaatt                                                                                        <  2:2027018/91‑1 (MQ=255)

     atccggcgtactttggttatataaatatcacaatggttaaaattaaaaagcaatgtcagttcacactattactgacattgctttttaattt                                                                                       >  1:2685559‑M2/86‑91 (MQ=255)

       tttATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTttttaatttta                                                                                     >  1:1543407/1‑91 (MQ=255)

       ccggcgtactttggttatataaatatcccaattgttaaaattagaaagcaatgtcagttcacactattactaacattactttttaatttta                                                                                     >  2:2150814‑M2/84‑91 (MQ=255)

            aGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCAt                                                                                >  2:5511531/1‑91 (MQ=255)

             gACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCAtt                                                                               <  1:5404517/91‑1 (MQ=255)

             gACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCAtt                                                                               <  2:2520469/91‑1 (MQ=255)

             gACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCAtt                                                                               <  2:3092522/91‑1 (MQ=255)

               ccAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATtgt                                                                             >  2:1836716/1‑91 (MQ=255)

               ccAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATtgt                                                                             >  1:4020330/1‑91 (MQ=255)

               ccAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATtgt                                                                             <  1:2489135/91‑1 (MQ=255)

                 aaaaGCTTGTGACTGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGa                                                                           <  2:3743113/91‑1 (MQ=255)

                 aaaaGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGa                                                                           <  2:2879471/91‑1 (MQ=255)

                 aaaaGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGa                                                                           <  1:3835933/91‑1 (MQ=255)

                  aaaGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGat                                                                          <  1:5500347/91‑1 (MQ=255)

                    aGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGatat                                                                        <  2:240740/91‑1 (MQ=255)

                    aGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGatat                                                                        <  2:670900/91‑1 (MQ=255)

                    aGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGatat                                                                        >  2:4365082/1‑91 (MQ=255)

                     gCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATAtt                                                                       >  2:5629235/1‑91 (MQ=255)

                      cTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATAttt                                                                      >  2:302780/1‑91 (MQ=255)

                      cTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATAttt                                                                      >  1:5466445/1‑91 (MQ=255)

                       ttGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTta                                                                     >  1:1265913/1‑91 (MQ=255)

                       ttGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTta                                                                     >  1:3206348/1‑91 (MQ=255)

                       ttGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTta                                                                     >  1:1744988/1‑91 (MQ=255)

                       ttGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTta                                                                     >  1:892021/1‑91 (MQ=255)

                       ttGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTta                                                                     >  1:1011286/1‑91 (MQ=255)

                       ttGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTta                                                                     >  2:1053765/1‑91 (MQ=255)

                        tgtgAATGAATAATATACACATAAGTAAAAGCAATGTTAGTAATAGTGTGAACTGACATTGATTTTTAATTTTAACCATTGTGATATTtat                                                                    >  2:3961255/1‑91 (MQ=255)

                        tgtgAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTtat                                                                    <  2:329419/91‑1 (MQ=255)

                        tgtgAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTtat                                                                    <  1:734354/91‑1 (MQ=255)

                        tgtgAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTtat                                                                    >  1:4235140/1‑91 (MQ=255)

                        tgtgAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTtat                                                                    >  2:1625138/1‑91 (MQ=255)

                          tgaatgaaTAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTtatat                                                                  <  1:2412194/91‑1 (MQ=255)

                           gaatgaatAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTtatata                                                                 >  1:2206249/1‑91 (MQ=255)

                                 ataataTACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTCTTAATTTTAACCATTGTGATATTTATATAACCaaa                                                           >  2:1383716/1‑91 (MQ=255)

                                   aataTACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGt                                                         <  1:4740005/91‑1 (MQ=255)

                                   aataTACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGt                                                         >  2:4634754/1‑91 (MQ=255)

                                   aataTACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGt                                                         >  2:5528878/1‑91 (MQ=255)

                                      ataCACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACg                                                      <  1:3288819/91‑1 (MQ=255)

                                       taCACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGc                                                     <  1:1912384/91‑1 (MQ=255)

                                        acacATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGcc                                                    >  1:2313775/1‑91 (MQ=255)

                                         cacaTAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCg                                                   <  2:5159181/91‑1 (MQ=255)

                                           caTAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGa                                                 >  2:3238231/1‑91 (MQ=255)

                                             tAACTAAAAGCAATGTCAGTAATAGTGTGAACTGAGATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGAtt                                               >  1:4155285/1‑91 (MQ=255)

                                             tAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGAtt                                               >  1:2544902/1‑91 (MQ=255)

                                              aaCTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGAttt                                              <  2:1741609/91‑1 (MQ=255)

                                              aaCTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGAttt                                              >  1:4121717/1‑91 (MQ=255)

                                               aCTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGAtttt                                             >  2:5366844/1‑91 (MQ=255)

                                                 tAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTaa                                           >  1:3938361/1‑91 (MQ=255)

                                                 tAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTaa                                           >  2:865384/1‑91 (MQ=255)

                                                 tAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTaa                                           <  1:63632/91‑1 (MQ=255)

                                                   AAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTaaaa                                         <  2:4547758‑M1/91‑1 (MQ=255)

                                                   AAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTaaaa                                         <  2:4703417‑M1/91‑1 (MQ=255)

                                                      gcaatgtcagttcacactattactgacattgcttttTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAg                                      >  2:3182080‑M2/37‑91 (MQ=255)

                                                      GCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAg                                      <  2:5227708‑M1/91‑1 (MQ=255)

                                                      GCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAg                                      >  1:1499307‑M1/1‑91 (MQ=255)

                                                       CAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGa                                     <  1:2906305‑M1/91‑1 (MQ=255)

                                                       CAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGa                                     <  2:2305127‑M1/91‑1 (MQ=255)

                                                        AATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACGATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGaa                                    <  2:5690037‑M1/91‑1 (MQ=255)

                                                         ATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATagacg                                   >  1:1654141‑M1/1‑89 (MQ=255)

                                                         ATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAg                                   >  1:585160‑M1/1‑91 (MQ=255)

                                                          TGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGACGGATTTTAAAATAGAAGc                                  <  2:4013535‑M1/91‑1 (MQ=255)

                                                           GTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCg                                 >  2:4725857‑M1/1‑91 (MQ=255)

                                                           GTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCg                                 >  1:3529086‑M1/1‑91 (MQ=255)

                                                            TCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGa                                >  2:3523386‑M1/1‑91 (MQ=255)

                                                             cagttcacactattactgacattgcttttTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAg                               >  1:4866002‑M2/30‑91 (MQ=255)

                                                             CAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAg                               <  1:3158649‑M1/91‑1 (MQ=255)

                                                              AGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGt                              <  2:1156711‑M1/91‑1 (MQ=255)

                                                               GTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTc                             >  2:2769721‑M1/1‑91 (MQ=255)

                                                                   tAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTcc                         <  1:4328989/91‑1 (MQ=255)

                                                                    aGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCt                        <  2:1242311/91‑1 (MQ=255)

                                                                     gtgtGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTg                       >  1:963519/1‑91 (MQ=255)

                                                                       gtgAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGtt                     >  2:3602600/1‑91 (MQ=255)

                                                                         gAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGTTAc                   >  2:3481251/1‑91 (MQ=255)

                                                                         gAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGTTAc                   <  1:4069346/91‑1 (MQ=255)

                                                                         gAACTGACATTGCGTTTTAATTTTAAGCATTGTGATATTTATATAACGAAAGTACGCCGGATTTGAAAATAGAAGCGAGTCGTCCTGTTAc                   <  2:2824592/91‑1 (MQ=255)

                                                                          aaCTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGTTACa                  >  1:419096/1‑91 (MQ=255)

                                                                           actgacattgcttttTTTTTTTTATTATTGTGATATTTATATAACCAAAGTACGTCGGATTTTAAAATAGAAGCGAGTCGTCCTGTTACAg                 >  2:586630‑M2/16‑91 (MQ=255)

                                                                           actgacattgcttttTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGTTACAg                 >  1:1219987‑M2/16‑91 (MQ=255)

                                                                              gacattgcttttTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGTTACAGTGc              >  1:4029872‑M2/13‑91 (MQ=255)

                                                                              gacattgcttttTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGTTACAGTGc              <  2:4247806‑M2/79‑1 (MQ=255)

                                                                               acattgcttttTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGTTACAGTGCg             <  1:5060261‑M2/80‑1 (MQ=255)

                                                                               acattgcttttTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGTTACAGTGCg             <  2:4945382‑M2/80‑1 (MQ=255)

                                                                                 attgcttttTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGTTACAGTGCGGt           >  1:2029966‑M2/10‑91 (MQ=255)

                                                                                   tgcttttTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGTTACAGTGCGGTcc         >  1:3108037‑M2/8‑91 (MQ=255)

                                                                                   tgcttttTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGTTACAGTGCGGTcc         >  1:2786727‑M2/8‑91 (MQ=255)

                                                                                   tgcttttTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGTTACAGTGCGGTcc         <  2:2643555‑M2/84‑1 (MQ=255)

                                                                                   tgcttttTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGTTACAGTGCGGTcc         >  1:1416061‑M2/8‑91 (MQ=255)

                                                                                    gcttttTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGTTACAGTGCGGTCCa        >  2:3840521‑M2/7‑91 (MQ=255)

                                                                                    gcttttTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGTTACAGTGCGGTCCa        <  2:419096‑M2/85‑1 (MQ=255)

                                                                                    gcttttTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGTTACAGTGCGGTCCa        <  2:811204‑M2/85‑1 (MQ=255)

                                                                                     cttttTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGTTACAGTGCGGTCCAt       >  1:613319‑M2/6‑91 (MQ=255)

                                                                                        ttTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGTTACAGTGCGGTCCATGat    >  1:2181713‑M2/3‑91 (MQ=255)

                                                                                         tTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGTTACAGTGCGGTCCATGata   >  2:334490‑M2/2‑91 (MQ=255)

CACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGTTACAGTGCGGTCCATGATAT  >  USA300TCH1516_ALE/933347‑933527

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.