BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	933397 =	248 (0.830)	18 (0.070)	14/130	NT	9.2%	intergenic (+14/+45)	USA300HOU_RS04645/yjlD	hypothetical protein/NADH dehydrogenase‑like protein YjlD
*	?	USA300TCH1516_ALE	933437 =	155 (0.640)	18 (0.070)	14/130	NT	9.2%	intergenic (+54/+5)	USA300HOU_RS04645/yjlD	hypothetical protein/NADH dehydrogenase‑like protein YjlD

Only 100 of 350 total aligned reads displayed.

ATGAATATGTAGCAGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAA  >  USA300TCH1516_ALE/933307‑933487

tatcatggaccgcactgtaacaggacgactcgcttctattttaaaatccggcgtactttggttatataaatatcacaatggttaaaattaa                                                                                            >  2:334490‑M1/91‑91 (MQ=255)

 tGAATATGTAGCAGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTaa                                                                                           >  1:2670164/1‑91 (MQ=255)

   aaTATGTAGCAGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTaaaa                                                                                         <  2:2588320/91‑1 (MQ=255)

   aaTATGTAGCAGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTaaaa                                                                                         <  1:5411359/91‑1 (MQ=255)

    atggaccgcactgtaacaggacgactcgcttctattttaaaatccggcgtactttggttatataaatatcacaatggttaaaattaAAAAg                                                                                        >  2:855042‑M1/87‑91 (MQ=255)

    atggaccgcactgtaacaggacgactcgcttctattttaaaatccggcgtactttggttatataaatatcacaatggttaaaattaAAAAg                                                                                        <  1:2373295‑M1/5‑1 (MQ=255)

    atatGTAGCAGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGTATGAATAATATACACATAACTAAAAg                                                                                        <  2:1561655/91‑1 (MQ=255)

    atatGTAGCAGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAg                                                                                        >  1:1189483/1‑91 (MQ=255)

     tatGTAGCAGATGGTTATATACAAAGAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGc                                                                                       >  2:4901793/1‑91 (MQ=255)

      ggaccgcactgtaacaggacgactctcttctattttaaaatccggcgtactttggttatataaatatcacaatggttaaaattaAAAAGCa                                                                                      >  2:4265281‑M1/85‑91 (MQ=255)

      ggaccgcactgtaacaggacgactcgcttctattttaaaatccggcgtactttggttatataaatatcacaatggttaaaattaAAAAGCa                                                                                      >  1:1416061‑M1/85‑91 (MQ=255)

      ggaccgcactgtaacaggacgactcgcttctattttaaaatccggcgtactttggttatataaatatcacaatggttaaaattaAAAAGCa                                                                                      >  1:3108037‑M1/85‑91 (MQ=255)

       tGTAGCAGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCaa                                                                                     <  1:5094384/91‑1 (MQ=255)

       tGTAGCAGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCaa                                                                                     >  1:4808603/1‑91 (MQ=255)

        gTAGCAGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAAt                                                                                    >  2:2312060/1‑91 (MQ=255)

        accgcactgtaacaggacgactcgcttctattttaaaatccggcgtactttggttatataaatatcacaatggttaaaattaAAAAGCAAt                                                                                    >  2:4210825‑M1/83‑91 (MQ=255)

         tAGCAGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATg                                                                                   >  1:3226980/1‑91 (MQ=255)

         ccgcactgtaacaggacgactcgcttctattttaaaatccggcgtactttggttatataaatatcacaatggttaaaattaAAAAGCAATg                                                                                   >  1:1740993‑M1/82‑91 (MQ=255)

          cgcactgtaacaggacgactcgcttctattttaaaatccggcgtactttggttatataaatatccccatggttaaaattaAAAAGCAATGt                                                                                  <  1:3129303‑M1/11‑1 (MQ=255)

           gCAGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTc                                                                                 <  1:970141/91‑1 (MQ=255)

           gCAGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTc                                                                                 <  1:1624572/91‑1 (MQ=255)

             actgtaacaggacgactcgcttctattttaaaatccggcgtactttggttatataaatatcacaatggttaaaattaAAAAGCAATGTCAg                                                                               >  2:4722246‑M1/78‑91 (MQ=255)

             aGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAg                                                                               <  2:2123002/91‑1 (MQ=255)

             aGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAg                                                                               >  2:2474804/1‑91 (MQ=255)

              gATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGt                                                                              <  2:3518830/91‑1 (MQ=255)

              ctgtaacaggacgactcgcttctattttaaaatccgacgtactttggttatataaatatcacaataataaaaaaaaAAAAGCAATGTCAGt                                                                              >  2:586630‑M1/77‑91 (MQ=255)

                tGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTaa                                                                            >  2:4156176/1‑91 (MQ=255)

                tGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTaa                                                                            <  2:795564/91‑1 (MQ=255)

                tGGTTATATACAAACAAAGCAAATCACTCGATTCATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTaa                                                                            <  1:5355026/91‑1 (MQ=255)

                  gTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATa                                                                          >  2:3786139/1‑91 (MQ=255)

                  gTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATa                                                                          >  1:3512294/1‑91 (MQ=255)

                    tatataCAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAgt                                                                        >  2:384247/1‑91 (MQ=255)

                    tatataCAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAgt                                                                        >  2:4095741/1‑91 (MQ=255)

                     atataCAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAgtg                                                                       >  2:633253/1‑91 (MQ=255)

                     atataCAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAgtg                                                                       >  2:3101967/1‑91 (MQ=255)

                       gacgactcgcttctattttaaaatccggcgtactttggttatataaatatcacaatggttaaaattaAAAAGCAATGTCAGTAATAGtgtg                                                                     >  2:3245875‑M1/68‑91 (MQ=255)

                        taCAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGa                                                                    >  1:3706140/1‑91 (MQ=255)

                        taCAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGa                                                                    <  2:5090964/91‑1 (MQ=255)

                         cgactcgcttctatcttacaatccggcgtactttggttatatagatatcacaatggttaaaattaAAAAGCAATGTCAGTAATAGTGTGaa                                                                   >  2:2402717‑M1/66‑91 (MQ=255)

                         acaaacaaAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGaa                                                                   <  1:2192596/91‑1 (MQ=255)

                            ctcgcttctattttaaaatccggcgtactttggttatataaatatcacaatggttaaaattaAAAAGCAATGTCAGTAATAGTGTGAACTg                                                                >  1:3910698‑M1/63‑91 (MQ=255)

                            aacaaaGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTg                                                                >  2:2065393/1‑91 (MQ=255)

                            aacaaaGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTg                                                                >  2:5443863/1‑91 (MQ=255)

                             acaaaGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGa                                                               <  2:1035220/91‑1 (MQ=255)

                             acaaaGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGa                                                               <  1:3752394/91‑1 (MQ=255)

                              caaaGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGAc                                                              <  1:3867652/91‑1 (MQ=255)

                                aaGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACAt                                                            <  1:5467555/91‑1 (MQ=255)

                                 ttctattttaaaatccggcgtactttggttatataaatatcacaatggttaaaattaAAAAGCAATGTCAGTAATAGTGTGAACTGACAtt                                                           >  1:4131074‑M1/58‑91 (MQ=255)

                                  gCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTg                                                          >  2:3584721/1‑91 (MQ=255)

                                    aaaTCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATCGTGTGAACTGATATTGCt                                                        >  1:4890030/1‑91 (MQ=255)

                                     aaTCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCtt                                                       >  2:3698219/1‑91 (MQ=255)

                                     aaTCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCtt                                                       <  2:5661806/91‑1 (MQ=255)

                                       tCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCtttt                                                     <  1:4625600/91‑1 (MQ=255)

                                       tCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCtttt                                                     <  2:3994329/91‑1 (MQ=255)

                                        cACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCttttt                                                    >  1:5668046/1‑91 (MQ=255)

                                        cACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCttttt                                                    <  1:33919/91‑1 (MQ=255)

                                          cTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTttttaa                                                  >  1:5530078/1‑91 (MQ=255)

                                           tCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTttttaat                                                 >  2:5310112/1‑91 (MQ=255)

                                            cGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTttttaatt                                                <  1:5310112/91‑1 (MQ=255)

                                             gATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTttttaattt                                               >  1:4159300/1‑91 (MQ=255)

                                               tttATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTttttaatttta                                             >  1:1543407/1‑91 (MQ=255)

                                               tttATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTttttaatttta                                             <  2:2848873/91‑1 (MQ=255)

                                                  ataGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAAcc                                          >  2:1474038/1‑91 (MQ=255)

                                                   taGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCa                                         <  2:1635640/91‑1 (MQ=255)

                                                    aGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCAt                                        >  1:903863/1‑91 (MQ=255)

                                                    aGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCAt                                        >  2:5511531/1‑91 (MQ=255)

                                                     gACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGaa                                                                   <  1:2235432/63‑1 (MQ=255)

                                                       ccAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATtgt                                     >  2:1836716/1‑91 (MQ=255)

                                                       ccAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATtgt                                     >  1:4020330/1‑91 (MQ=255)

                                                       ccAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATtgt                                     >  1:4247806/1‑91 (MQ=255)

                                                       ccAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATtgt                                     <  2:2229829/91‑1 (MQ=255)

                                                         aaaaGCTTGTGACTGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGa                                   <  2:3743323/91‑1 (MQ=255)

                                                          aaaGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGat                                  <  1:5500347/91‑1 (MQ=255)

                                                           aaGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGata                                 <  1:2524992/91‑1 (MQ=255)

                                                           aaGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGata                                 >  1:2044902/1‑91 (MQ=255)

                                                            aGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGatat                                <  2:4597018/91‑1 (MQ=255)

                                                              cTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATAttt                              >  2:302780/1‑91 (MQ=255)

                                                              cTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATAttt                              <  2:5598401/91‑1 (MQ=255)

                                                               ttGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTta                             >  1:1011286/1‑91 (MQ=255)

                                                               ttGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTta                             <  2:4497101/91‑1 (MQ=255)

                                                               ttGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTta                             >  1:1265913/1‑91 (MQ=255)

                                                                tgtgAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTtat                            <  1:734354/91‑1 (MQ=255)

                                                                  tgaatgaaTAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTtatat                          >  1:2451479/1‑91 (MQ=255)

                                                                    aatgaagAATAGACACATAACTAAAAGCAATGTCAGTAATAGTGTGAAGAGACATTGCTTTTTAATTTTAACCATTGTGTTATTTATATaa                        <  2:3961097/91‑1 (MQ=255)

                                                                       gaatAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCa                     <  2:5129319/91‑1 (MQ=255)

                                                                        aataatATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCaa                    <  1:2869969/91‑1 (MQ=255)

                                                                           aataTACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGt                 >  2:4634754/1‑91 (MQ=255)

                                                                           aataTACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGt                 <  1:4740005/91‑1 (MQ=255)

                                                                            atatACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTa                <  2:110511/91‑1 (MQ=255)

                                                                              ataCACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTAca              >  1:2770236/1‑90 (MQ=255)

                                                                              ataCACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACg              <  1:3288819/91‑1 (MQ=255)

                                                                               taCACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGc             <  1:1912384/91‑1 (MQ=255)

                                                                                 cacaTAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCg           >  1:4036073/1‑91 (MQ=255)

                                                                                   caTAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGa         >  1:5866419/1‑91 (MQ=255)

                                                                                    aTAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGAt        <  2:4684078/91‑1 (MQ=255)

                                                                                     tAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGAtt       <  2:1316399/91‑1 (MQ=255)

                                                                                     tAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGAtt       <  1:212247/91‑1 (MQ=255)

                                                                                       aCTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGAtttt     >  2:5366844/1‑91 (MQ=255)

                                                                                         tAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTaa   <  1:63632/91‑1 (MQ=255)

                                                                                         tAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTaa   <  2:1908734/91‑1 (MQ=255)

ATGAATATGTAGCAGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAA  >  USA300TCH1516_ALE/933307‑933487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.