| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2683696 = | 290 (0.970) | 14 (0.050) | 8/144 | NT | 5.3% | coding (622/1167 nt) | mvaS | Hydroxymethylglutaryl‑CoA synthase |
| ? | USA300TCH1516_ALE | 2683719 = | 241 (0.900) | coding (645/1167 nt) | mvaS | Hydroxymethylglutaryl‑CoA synthase | |||||
CCCATTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTGGAATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2683793‑2683696‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggaatgaATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCATTAG > USA300TCH1516_ALE/2683719‑2683807 CCCATTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTT < 1:1236774/91‑1CCCATTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTT < 2:3688417/91‑1CCCATTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTT < 2:652104/91‑1CCCATTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTT < 1:2714785/91‑1CCCATTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTT > 1:4952493/1‑91CCCATTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTT < 2:607402/91‑1 CCATTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTG < 2:2805373/91‑1 CCATTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTG < 1:4924030/91‑1 CCATTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTG > 2:1383495/1‑91 CCATTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTG > 1:2688618/1‑91 CCATTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTG < 2:3709174/91‑1 CCATTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTG < 1:2654088/91‑1 CCATTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTG > 2:253420/1‑91 CCATTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTG < 1:4283012/91‑1 CCATTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTG > 1:4315314/1‑91 CCATTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTG < 2:3380208/91‑1 CATTTTTGTATATGGAACATGGAAGCGTAGAGATGCGAAGTCAGCTAGCGACTTACCTTGGCGTTTTGCGTATTCATTCCAGCTTTGTTGG < 1:3926245/91‑1 CATTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTGG > 2:5825988/1‑91 CATTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTGG > 1:4450588/1‑91 CATTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTGG < 2:3107399/91‑1 ATTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTGGA > 2:604393/1‑91 ATTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTGGA > 1:2646651/1‑91 ATTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTGGA > 1:2642655/1‑91 ATTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTGGA < 2:801311/91‑1 TTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTGGAA > 1:2450002/1‑91 TTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTGGAA < 1:1754743/91‑1 TTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTGGAA > 1:1280333/1‑91 TTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTGGAAT > 1:790035/1‑91 TTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTGGAAT > 1:603810/1‑91 TTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCACTCCAGCTTTGTTGGAATG < 2:3921464/91‑1 TTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTGGAATGA > 2:1150767/1‑91 CATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTGGAATG > 2:424180/1‑78 CATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTGGAATG < 1:424180/78‑1 CATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTGGACGTTTTGCGTATTCATTCCAACAAAGCTGGAATGAATACGCAAAACG < 2:1084690/91‑1 GCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCG < 1:340944/91‑1 GTATTCATTCCAGCTTTGTTGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTT > 1:3306151/1‑91 TCCAGCTTTGTTGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAAT > 1:1989958/1‑91 TCCAGCTTTGTTGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAAT > 1:1212661/1‑91 CAGCTTTGTTGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGG > 2:4946743/1‑91 CAGCTTTGTTGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGG > 1:2046086/1‑91 CAGCTTTGTTGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGG > 1:2045830/1‑91 AGCTTTGTTGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGG > 1:4087231/1‑91 AGCTTTGTTGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGG > 1:4086731/1‑91 GCTTTGTTGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGT > 1:5306330/1‑91 GCTTTGTTGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGT > 2:567567/1‑91 GCTTTGTTGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGT > 1:3011624/1‑91 CTTTGTTGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTA > 1:4562583/1‑91 TTTGTTGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAA > 1:3336491/1‑91 TTGTTGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAA > 1:5439767/1‑91 TTGTTGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAA > 2:1062284/1‑91 TTGTTGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAA > 1:4700323/1‑91 TGGAATGAATACGCAAAACGTCTAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGAAAAAAAAAAAAAAATGGGTAAAAAGG < 2:5774681/91‑1 TGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGG > 1:5503618/1‑91 TGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGG > 2:5142898/1‑91 TGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGG > 2:5084050/1‑91 TGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGG < 2:71215/91‑1 TGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGG > 1:3573549/1‑91 TGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGG > 1:4656834/1‑91 TGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGG < 2:2236994/91‑1 TGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGG < 2:2208562/91‑1 TGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGG > 1:5319148/1‑91 TGGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGATCCAAATAAAAAAATGGGTAAAAAGG < 2:2365209/91‑1 GGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGC > 1:452638/1‑91 GGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGC > 1:4451832/1‑91 GGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGC > 2:5301233/1‑91 GGAATGAATACGCAAAACGTCAAGGTAAGTCGCTAACTAACTTCGCATCTCTATGCTTCCATGTTCCATTTAAAAAAATAAATAAAAAGGC < 2:5225234/91‑1 AATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCAT > 2:95336/1‑91 AATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCAT > 1:1466123/1‑91 AATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCAT > 2:960236/1‑91 AATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATACTTCCATGTTCCATTTACACAAATGGGTAAAGAGGCAT > 1:4885096/1‑91 AATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTGCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCAT < 2:2988036/91‑1 ATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCATT < 1:2522142/91‑1 ATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCATT > 1:1522644/1‑91 ATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCATT > 1:2657383/1‑91 ATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCATT < 1:5580411/91‑1 ATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCATT < 1:2891957/91‑1 ATGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCATT < 1:4547287/91‑1 TGAATACTCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCTATTTACAAAAATGAGAAAAAAGGCATTA < 2:5597222/91‑1 TGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCATTA > 2:598484/1‑91 TGAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCATTA < 2:4733106/91‑1 GAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCATTAG < 1:2860077/91‑1 GAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCATTAG < 1:2859975/91‑1 GAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCATTAG > 2:4075059/1‑91 GAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCATTAG < 2:3257748/91‑1 GAATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCATTAG > 1:1064395/1‑91 CCCATTTTTGTAAATGGAACATGGAAGCATAGAGATGCGAAGTCAGCTAGCGACTTACCTTGACGTTTTGCGTATTCATTCCAGCTTTGTTGGAATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2683793‑2683696‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggaatgaATACGCAAAACGTCAAGGTAAGTCGCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCATTAG > USA300TCH1516_ALE/2683719‑2683807 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |