BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2683696 =	290 (0.970)	14 (0.050)	8/144	NT	5.3%	coding (622/1167 nt)	mvaS	Hydroxymethylglutaryl‑CoA synthase
*	?	USA300TCH1516_ALE	2683719 =	241 (0.900)	14 (0.050)	8/144	NT	5.3%	coding (645/1167 nt)	mvaS	Hydroxymethylglutaryl‑CoA synthase

Only 100 of 388 total aligned reads displayed.

TACACTGAAGACGTTTATGATTTCTGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAA  >  USA300TCH1516_ALE/2683606‑2683786

 ctaatgcctttttacccatttttgtaaatggaacatggaagcatagagatgcgaagtcagctagcgacttaccttgacgttttgcgtattc                                                                                            >  1:1064395‑M1/90‑91 (MQ=255)

 ctaatgcctttttacccatttttgtaaatggaacatggaagcatagagatgcgaagtcagctagcgacttaccttgacgttttgcgtattc                                                                                            >  2:4075059‑M1/90‑91 (MQ=255)

  taatgcctttttacccatttttgtaaatggaacatggaagcatagagatgcgaagtcagctagcgacttaccttgacgttttgcgtattca                                                                                           <  2:4733106‑M1/3‑1 (MQ=255)

  cacTGAAGACGTTTATGATTTCTGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCa                                                                                           >  2:2646651/1‑91 (MQ=255)

  cacTGAAGACGTTTATGATTTCTGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCa                                                                                           <  1:956105/91‑1 (MQ=255)

  cacTGAAGACGTTTATGATTTCTGGCGTCCAACTGCACATAAATCTCCGTTAGTTGCTGGTCCATAAACTAAAGATGCTTATATCCGCTCa                                                                                           >  2:5437245/1‑91 (MQ=255)

   acTGAAGACGTTTATGATTTCTGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCAt                                                                                          <  2:5252190/91‑1 (MQ=255)

   acTGAAGACGTTTATGATTTCTGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCAt                                                                                          <  1:2634160/91‑1 (MQ=255)

    cTGAAGACGTTTATGATTTCTGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCAtt                                                                                         <  1:1582340/91‑1 (MQ=255)

    atgcctttttacccatttttgtaaatggaacatggaagcatagagatgcgaagtcagctagcgacttaccttgacgttttgcgtattcatt                                                                                         >  2:95336‑M1/87‑91 (MQ=255)

    atgcctttttacccatttttgtaaatggaacatggaagcatagagatgcgaagtcagctagcgacttaccttgacgttttgcgtattcatt                                                                                         >  1:1466123‑M1/87‑91 (MQ=255)

      gaggACGTTTATGATTTCTGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTcc                                                                                       >  2:5815459/4‑91 (MQ=255)

       cctttttacccatttttgtaaatggaacatggaagcatagagatgcgaagtcagctagcgacttaccttgacgttttgcgtatTCATTCca                                                                                      <  2:2208562‑M1/8‑1 (MQ=255)

       cctttttacccatttttgtaaatggaacatggaagcatagagatgcgaagtcagctagcgacttaccttgacgttttgcgtatTCATTCca                                                                                      >  2:5084050‑M1/84‑91 (MQ=255)

          aCGTTTATGATTTCTGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCcaaca                                                                                   >  2:5218690/1‑91 (MQ=255)

           tttacccatttttgtaaatggaacatggaagcatagagatgcgaagtcagctagcgacttaccttgacgttttgcgtatTCATTCcaacaa                                                                                  >  2:1062284‑M1/80‑91 (MQ=255)

           tttacccatttttgtaaatggaacatggaagcatagagatgcgaagtcagctagcgacttaccttgacgttttgcgtatTCATTCcaacaa                                                                                  >  1:4700323‑M1/80‑91 (MQ=255)

             tacccatttttgtaaatggaacatggaagcatagagatgcgaagtcagctagcgacttaccttgacgttttgcgtatTCATTCCAACAAAg                                                                                >  1:4562583‑M1/78‑91 (MQ=255)

              ttATGATTTCTGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGc                                                                               >  1:1710780/1‑91 (MQ=255)

               tATGATTTCTGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCt                                                                              <  1:3110632/91‑1 (MQ=255)

               cccatttttgtaaatggaacatggaagcatagagatgcgaagtcagctagcgacttaccttgacgttttgcgtatTCATTCCAACAAAGCt                                                                              >  1:4086731‑M1/76‑91 (MQ=255)

                aTGATTTCTGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTg                                                                             <  1:3390725/91‑1 (MQ=255)

                aTGATTTCTGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTg                                                                             >  1:5481894/1‑91 (MQ=255)

                 tGATTTCTGGCGTCTAACTGGACATAAATATCCATTAGTTGATGGTGCATCATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTgg                                                                            <  1:4866531/91‑1 (MQ=255)

                   aTTTCTGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGgaa                                                                          <  1:2074896/91‑1 (MQ=255)

                     ttCTGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGgaatg                                                                        <  2:4468431/91‑1 (MQ=255)

                     ttCTGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGgaatg                                                                        >  2:2336892/1‑91 (MQ=255)

                     ttCTGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGgaatg                                                                        >  1:2184694/1‑91 (MQ=255)

                      tCTGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGgaatga                                                                       >  1:606011/1‑91 (MQ=255)

                      tCTGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGgaatga                                                                       >  2:1280333/1‑91 (MQ=255)

                       cTGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGgaatgaa                                                                      <  1:3940468/91‑1 (MQ=255)

                       cTGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGgaatgaa                                                                      >  2:5019974/1‑91 (MQ=255)

                           cGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACg                                                                  >  1:5337265/1‑91 (MQ=255)

                           cGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACg                                                                  <  1:5586364/91‑1 (MQ=255)

                           cGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACg                                                                  >  2:785933/1‑91 (MQ=255)

                             tCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCa                                                                >  2:340828/1‑91 (MQ=255)

                             tCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCa                                                                <  1:3589199/91‑1 (MQ=255)

                              ccAACTGGACATAAATATCCATTAGTTGATGGTGCATTTTCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCaa                                                               <  1:4844642/91‑1 (MQ=255)

                                 aCTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGTAATGAATATGCAAAAc                                                            >  2:5580411/1‑91 (MQ=255)

                                 aCTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAAc                                                            >  1:5519863/1‑91 (MQ=255)

                                 aCTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAAc                                                            >  1:5131871/1‑91 (MQ=255)

                                  cTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACg                                                           <  1:3643007/91‑1 (MQ=255)

                                     gACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCa                                                        <  1:3015878/91‑1 (MQ=255)

                                      aCATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCaa                                                       >  1:3773915/1‑91 (MQ=255)

                                       cATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAg                                                      >  2:2078979/1‑91 (MQ=255)

                                       cATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAg                                                      <  1:1190538/91‑1 (MQ=255)

                                          aaaTATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTa                                                   >  1:3870107/1‑91 (MQ=255)

                                           aaTATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTaa                                                  <  2:3345299/91‑1 (MQ=255)

                                           aaTATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTaa                                                  >  2:3103407/1‑91 (MQ=255)

                                            atatCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAg                                                 <  1:4333269/91‑1 (MQ=255)

                                              atCCATTCGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATAAGCAAAACGTCAAGGTAAGTc                                               >  2:2441846/1‑91 (MQ=255)

                                               tCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑g                                             >  2:492957/1‑91 (MQ=255)

                                                ccATTAGTTGATGGTGCATTATCTACGGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑Gc                                            <  2:1953897/91‑1 (MQ=255)

                                                  aTTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAGCAAGGCTGGAATGAATACGCAAAACGGCAAGGTAAGTcagct                                           <  2:2024885/91‑5 (MQ=255)

                                                   ttAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAg                                         <  1:1831876/91‑1 (MQ=255)

                                                   ttAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAg                                         >  1:2336524/1‑91 (MQ=255)

                                                    tAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGc                                        >  1:2899113/1‑91 (MQ=255)

                                                     aGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTCAGCTAGc                                        <  2:395756/91‑1 (MQ=255)

                                                     aGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCt                                       <  2:3563314/91‑1 (MQ=255)

                                                      gTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTg                                      >  2:1627560/1‑91 (MQ=255)

                                                        tGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGAc                                    <  1:5292906/91‑1 (MQ=255)

                                                         gagggTGCATTATCGAAAGAAGCTAAGAACCGACCAATCCAACAAAGTTGGAATGAATACGCAAAGCATCAAGGTAAGTC‑GCTAGCTGACt                                   <  2:3256564/88‑1 (MQ=255)

                                                          aTGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACtt                                  <  1:5749448/91‑1 (MQ=255)

                                                          aTGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACtt                                  <  2:2518241/91‑1 (MQ=255)

                                                          aTGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACtt                                  >  1:2208562/1‑91 (MQ=255)

                                                           tGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTc                                 >  2:1503975/1‑91 (MQ=255)

                                                           tGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTc                                 >  1:2850983/1‑91 (MQ=255)

                                                            ggTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCg                                <  1:320668/91‑1 (MQ=255)

                                                             gTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGc                               <  1:5815459/91‑1 (MQ=255)

                                                              tGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCa                              <  2:1818127/91‑1 (MQ=255)

                                                                cATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCAtc                            <  2:270952/91‑1 (MQ=255)

                                                                  ttATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCAtctc                          <  1:2665489/91‑1 (MQ=255)

                                                                  ttATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCAtctc                          <  2:3004778/91‑1 (MQ=255)

                                                                  ttATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCAtctc                          >  1:3492577/1‑91 (MQ=255)

                                                                  ttATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCAtctc                          >  2:4418437/1‑91 (MQ=255)

                                                                    aTCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTa                        >  2:1686739/1‑91 (MQ=255)

                                                                      cTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTc                                                         <  1:1527640/57‑1 (MQ=255)

                                                                        aaaGATGCTTATGTCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCt                    <  2:3781363/91‑1 (MQ=255)

                                                                         aaGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCtt                   >  1:243642/1‑91 (MQ=255)

                                                                         aaGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCtt                   <  1:1379203/91‑1 (MQ=255)

                                                                         aaGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCtt                   >  1:4529872/1‑91 (MQ=255)

                                                                          aGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTc                  >  1:2042957/1‑91 (MQ=255)

                                                                          aGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTc                  <  1:1007559/91‑1 (MQ=255)

                                                                          aGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTc                  >  2:5737100/1‑91 (MQ=255)

                                                                           gATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTcc                 <  2:3870107/91‑1 (MQ=255)

                                                                           gATGCTTATATCCGCACATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCACTATGCTTcc                 >  1:3535002/1‑91 (MQ=255)

                                                                            aTGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCa                >  2:675240/1‑91 (MQ=255)

                                                                              gCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATg              >  2:3862762/1‑91 (MQ=255)

                                                                                ttATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGtt            >  1:816317/1‑91 (MQ=255)

                                                                                 tataTCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTc           >  2:2906275/1‑91 (MQ=255)

                                                                                 tataTCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTc           >  1:4937068/1‑91 (MQ=255)

                                                                                 tataTCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTc           >  1:4422533/1‑91 (MQ=255)

                                                                                  atatCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTcc          >  1:3288484/1‑91 (MQ=255)

                                                                                    atCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTccct        >  2:4263909/1‑89 (MQ=255)

                                                                                     tCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCAtt       <  1:1659285/91‑1 (MQ=255)

                                                                                       cGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTa     <  1:785933/91‑1 (MQ=255)

                                                                                       cGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTa     <  2:56342/91‑1 (MQ=255)

                                                                                       cGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTa     <  1:4161328/91‑1 (MQ=255)

                                                                                         cTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACa   >  2:4599378/1‑91 (MQ=255)

                                                                                          TCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACaa  >  2:1150767‑M1/1‑91 (MQ=255)

TACACTGAAGACGTTTATGATTTCTGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAA  >  USA300TCH1516_ALE/2683606‑2683786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.