BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2683696 =	290 (0.970)	14 (0.050)	8/144	NT	5.3%	coding (622/1167 nt)	mvaS	Hydroxymethylglutaryl‑CoA synthase
*	?	USA300TCH1516_ALE	2683719 =	241 (0.900)	14 (0.050)	8/144	NT	5.3%	coding (645/1167 nt)	mvaS	Hydroxymethylglutaryl‑CoA synthase

Only 100 of 373 total aligned reads displayed.

CTGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCATTAGAG  >  USA300TCH1516_ALE/2683629‑2683809

cTGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGgaatgaa                                                                                             >  2:5019974/1‑91 (MQ=255)

cTGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATGATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGgaatgaa                                                                                             <  2:674011/91‑1 (MQ=255)

 tGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGgaatgaat                                                                                            >  1:1664189/1‑91 (MQ=255)

   gCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATAc                                                                                          >  1:1924218/1‑91 (MQ=255)

    cGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACg                                                                                         <  1:5586364/91‑1 (MQ=255)

    cGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACg                                                                                         >  2:785933/1‑91 (MQ=255)

    cGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACg                                                                                         >  1:2200862/1‑91 (MQ=255)

     gTCCAACTGAACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGCATACGc                                                                                        >  2:5369208/1‑91 (MQ=255)

      tCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCa                                                                                       <  1:3589199/91‑1 (MQ=255)

      tCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCa                                                                                       >  2:340669/1‑91 (MQ=255)

       ccAACTGGACATAAATATCCATTAGTTGATGGTGCATTTTCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCaa                                                                                      <  1:4844642/91‑1 (MQ=255)

       ccAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCaa                                                                                      >  1:2236994/1‑91 (MQ=255)

          aCTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAAc                                                                                   >  1:5519863/1‑91 (MQ=255)

          aCTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAAc                                                                                   >  1:1398867/1‑91 (MQ=255)

           cTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACg                                                                                  >  1:387994/1‑91 (MQ=255)

           cTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACg                                                                                  >  1:3646996/1‑91 (MQ=255)

            tGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGt                                                                                 >  1:3941470/1‑91 (MQ=255)

              gACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCa                                                                               <  1:3015878/91‑1 (MQ=255)

               aCATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCaa                                                                              >  1:1150767/1‑91 (MQ=255)

                cATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAg                                                                             >  2:2078979/1‑91 (MQ=255)

                cATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAg                                                                             >  1:4858104/1‑91 (MQ=255)

                 aTAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAgg                                                                            <  1:1221835/91‑1 (MQ=255)

                   aaaTATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTa                                                                          <  2:1761249/91‑1 (MQ=255)

                   aaaTATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTa                                                                          <  1:2807428/91‑1 (MQ=255)

                   aaaTATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTa                                                                          >  1:3870107/1‑91 (MQ=255)

                    aaTATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTaa                                                                         <  2:3345299/91‑1 (MQ=255)

                       atCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTc                                                                      >  2:3803948/1‑91 (MQ=255)

                        tCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑g                                                                    >  2:492957/1‑91 (MQ=255)

                         ccATTAGTTGATGGTGCATTATCTACGGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑Gc                                                                   <  2:1953897/91‑1 (MQ=255)

                            ttAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAg                                                                >  2:2450002/1‑91 (MQ=255)

                            ttAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAg                                                                >  1:5840275/1‑91 (MQ=255)

                            ttAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAg                                                                <  1:3803906/91‑1 (MQ=255)

                             tAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTCAGCTAg                                                                <  1:4352855/91‑1 (MQ=255)

                              aGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTCAGCTAGc                                                               <  2:395756/91‑1 (MQ=255)

                              aGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCt                                                              <  2:3563314/91‑1 (MQ=255)

                               gTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTg                                                             >  2:1627560/1‑91 (MQ=255)

                                  gagggTGCATTATCGAAAGAAGCTAAGAACCGACCAATCCAACAAAGTTGGAATGAATACGCAAAGCATCAAGGTAAGTC‑GCTAGCTGACt                                                          <  2:3256564/88‑1 (MQ=255)

                                   aTGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACtt                                                         <  1:5749448/91‑1 (MQ=255)

                                   aTGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACtt                                                         >  1:3546988/1‑91 (MQ=255)

                                    tGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTc                                                        >  1:312426/1‑91 (MQ=255)

                                        gCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCAt                                                    >  1:2358835/1‑91 (MQ=255)

                                           ttATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCAtctc                                                 >  1:3492577/1‑91 (MQ=255)

                                           ttATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCAtctc                                                 <  1:2665489/91‑1 (MQ=255)

                                           ttATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCAtctc                                                 >  2:4418437/1‑91 (MQ=255)

                                            tATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATctct                                                >  2:2688618/1‑91 (MQ=255)

                                              tCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTAt                                              >  1:3259700/1‑91 (MQ=255)

                                              tCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTAt                                              >  2:2999537/1‑91 (MQ=255)

                                               cTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTc                                                                                <  1:1527640/57‑1 (MQ=255)

                                               cTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATg                                             >  2:2891957/1‑91 (MQ=255)

                                                 aaaGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCt                                           <  1:5277149/91‑1 (MQ=255)

                                                  aaGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCtt                                          >  1:4529872/1‑91 (MQ=255)

                                                   aGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTc                                         <  1:1007559/91‑1 (MQ=255)

                                                    gATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTcc                                        >  2:4532423/1‑91 (MQ=255)

                                                    gATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTcc                                        >  1:965579/1‑91 (MQ=255)

                                                    gATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTcc                                        <  2:3870107/91‑1 (MQ=255)

                                                    gATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCGAGCAGACTTCGCATCTCTATGCTTcc                                        >  2:5761814/1‑91 (MQ=255)

                                                    gATGCTTATATCCGCTCATTCCAACAAAGCAGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTGTGCTTcc                                        >  1:4657095/1‑91 (MQ=255)

                                                      tGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCAt                                      >  2:3037418/1‑91 (MQ=255)

                                                      tGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCAt                                      <  1:1627560/91‑1 (MQ=255)

                                                       cgttttgcgtatTCATTCCAGCTTTGTTGGAATGAATACGCAAAACGTCCAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATg                                     <  2:1084690‑M1/79‑1 (MQ=255)

                                                         ttATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGtt                                   >  1:816317/1‑91 (MQ=255)

                                                              tCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCAtt                              <  2:205507/91‑1 (MQ=255)

                                                               gtattcattccagctttgttggaatgaATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCAttt                             >  1:3306151‑M2/28‑91 (MQ=255)

                                                                cGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTa                            <  1:4161328/91‑1 (MQ=255)

                                                                cGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTa                            <  2:56342/91‑1 (MQ=255)

                                                                cGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTa                            <  1:785933/91‑1 (MQ=255)

                                                                cGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTACCATTTa                            >  2:5582399/1‑91 (MQ=255)

                                                                   TCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACaa                         >  2:1150767‑M1/1‑91 (MQ=255)

                                                                    CATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATg                                     >  2:424180‑M1/1‑78 (MQ=255)

                                                                     ATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACaaaa                       >  1:603810‑M1/1‑91 (MQ=255)

                                                                      TTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACaaaaa                      <  1:1754743‑M1/91‑1 (MQ=255)

                                                                       TCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAAt                     >  1:2646651‑M1/1‑91 (MQ=255)

                                                                        CCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATg                    <  2:3107399‑M1/91‑1 (MQ=255)

                                                                        CCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATg                    >  1:4450588‑M1/1‑91 (MQ=255)

                                                                         cagctttgttggaatgaATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATgg                   >  1:2046086‑M2/18‑91 (MQ=255)

                                                                         CAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATgg                   >  2:253420‑M1/1‑91 (MQ=255)

                                                                         CAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATgg                   <  1:4924030‑M1/91‑1 (MQ=255)

                                                                         CAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATgg                   <  1:4283012‑M1/91‑1 (MQ=255)

                                                                          agctttgttggaatgaATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATggg                  >  1:4086731‑M2/17‑91 (MQ=255)

                                                                          AACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATggg                  <  2:607402‑M1/91‑1 (MQ=255)

                                                                              ttgttggaatgaATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTaaa              >  1:5439767‑M2/13‑91 (MQ=255)

                                                                              aaGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTaaa              <  2:1483259/91‑1 (MQ=255)

                                                                              aaGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTaaa              >  2:468547/1‑91 (MQ=255)

                                                                              aaGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCAATGTTCCATTTACAAAAATGGGTaaa              >  2:3721254/1‑91 (MQ=255)

                                                                                gCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTaaaaa            <  2:3734629/91‑1 (MQ=255)

                                                                                gCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTaaaaa            >  2:1321239/1‑91 (MQ=255)

                                                                                 cTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAg           >  2:5209882/1‑91 (MQ=255)

                                                                                  tggaatgaATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAgg          <  2:2236994‑M2/83‑1 (MQ=255)

                                                                                  tggaatgaATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAgg          >  1:5319148‑M2/9‑91 (MQ=255)

                                                                                  tggaatgaATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAgg          >  2:5084050‑M2/9‑91 (MQ=255)

                                                                                  tggaatgaATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGATCCAAATAAAAAAATGGGTAAAAAgg          <  2:2365209‑M2/83‑1 (MQ=255)

                                                                                     aatgaATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCAt       >  1:1466123‑M2/6‑91 (MQ=255)

                                                                                     aatgaATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCAt       >  2:95336‑M2/6‑91 (MQ=255)

                                                                                      atgaATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCAtt      <  1:2522142‑M2/87‑1 (MQ=255)

                                                                                      atgaATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCAtt      <  1:2891957‑M2/87‑1 (MQ=255)

                                                                                      atgaATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCAtt      <  1:4547287‑M2/87‑1 (MQ=255)

                                                                                        gaATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCATTag    >  2:4075059‑M2/3‑91 (MQ=255)

                                                                                          atACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCATTagag  >  1:3339725/1‑91 (MQ=255)

                                                                                          atACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCATTagag  >  1:5022580/1‑91 (MQ=255)

                                                                                          atACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTGCGCAAGTCTATGCTTCCATGTTCCATTTACAAAAATAAAAAAAGAGGCATTagag  <  2:5820979/91‑1 (MQ=255)

CTGGCGTCCAACTGGACATAAATATCCATTAGTTGATGGTGCATTATCTAAAGATGCTTATATCCGCTCATTCCAACAAAGCTGGAATGAATACGCAAAACGTCAAGGTAAGTC‑GCTAGCTGACTTCGCATCTCTATGCTTCCATGTTCCATTTACAAAAATGGGTAAAAAGGCATTAGAG  >  USA300TCH1516_ALE/2683629‑2683809

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.