| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1279936 = | 287 (0.960) | 14 (0.070) +TTTGAAAATTATACGCAATATTAAC |
4/110 | NT | 6.8% | intergenic (+29/‑233) | cdsA/USA300HOU_RS06360 | Phosphatidate cytidylyltransferase/Putative zinc metalloprotease |
| ? | USA300TCH1516_ALE | 1279975 = | 275 (0.920) | intergenic (+68/‑194) | cdsA/USA300HOU_RS06360 | Phosphatidate cytidylyltransferase/Putative zinc metalloprotease | |||||
CTGAGATTCATTAAATTATCTCAGCAACTCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1279967‑1279936‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTAGA > USA300TCH1516_ALE/1279975‑1280062 ||||||||||||||||||||||||| CTGAGATTCATTAAATTATCTCAGCAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAT > 1:1742645/1‑91 TTCATTAAATTATCTCAGCAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACG > 1:323980/1‑91 TCATTAAATTATCTCAGCAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGC > 1:5111951/1‑91 TCTCAGCAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTT < 2:323980/91‑1 AACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAT < 1:1094697/91‑1 AACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAT > 1:3227668/1‑91 AACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAT > 2:3534496/1‑91 AACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAT < 2:4100705/91‑1 ACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATT > 1:1275378/1‑91 ACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATT > 2:1911637/1‑91 ACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATT > 2:3105184/1‑91 ACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATT > 2:3164787/1‑91 ACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATT > 2:5560954/1‑91 ACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATAAGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATT > 1:3662732/1‑91 tcCTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTAGA > 1:2904337/3‑91 ||||||||||||||||||||||||| CTGAGATTCATTAAATTATCTCAGCAACTCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1279967‑1279936‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTAGA > USA300TCH1516_ALE/1279975‑1280062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |