BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1279936 =	287 (0.960)	14 (0.070) +TTTGAAAATTATACGCAATATTAAC	4/110	NT	6.8%	intergenic (+29/‑233)	cdsA/USA300HOU_RS06360	Phosphatidate cytidylyltransferase/Putative zinc metalloprotease
*	?	USA300TCH1516_ALE	1279975 =	275 (0.920)	14 (0.070) +TTTGAAAATTATACGCAATATTAAC	4/110	NT	6.8%	intergenic (+68/‑194)	cdsA/USA300HOU_RS06360	Phosphatidate cytidylyltransferase/Putative zinc metalloprotease

Only 100 of 330 total aligned reads displayed.

ATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTAGACGT  >  USA300TCH1516_ALE/1279885‑1280065

atatTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCtt                                                                                            >  2:2589315/1‑91 (MQ=255)

   ttttATTAATACTATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTg                                                                                         <  2:3887251/91‑1 (MQ=255)

     ttattaATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGaa                                                                                       >  1:875910/1‑91 (MQ=255)

     ttattaATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGaa                                                                                       >  1:1404428/1‑91 (MQ=255)

     ttattaATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGaa                                                                                       >  1:4172456/1‑91 (MQ=255)

     ttattaATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGaa                                                                                       >  2:3701724/1‑91 (MQ=255)

      tattaATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGaaa                                                                                      <  1:4825543/91‑1 (MQ=255)

        ttaATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAAt                                                                                    <  1:793908/91‑1 (MQ=255)

        ttaATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAAt                                                                                    <  1:470958/91‑1 (MQ=255)

        ttaATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAAt                                                                                    >  1:3451868/1‑91 (MQ=255)

        ttaATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAAt                                                                                    <  2:204842/91‑1 (MQ=255)

          aaTACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATta                                                                                  >  1:5766373/1‑91 (MQ=255)

          aaTACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATta                                                                                  >  1:2476035/1‑91 (MQ=255)

            tACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATtata                                                                                >  1:2873084/1‑91 (MQ=255)

            tACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATtata                                                                                >  1:3710805/1‑91 (MQ=255)

            tACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTGTTGAAAATtata                                                                                >  2:3755045/1‑91 (MQ=255)

               aaTCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGc                                                                             <  2:1432592/91‑1 (MQ=255)

                aTCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCa                                                                            >  1:1778159/1‑91 (MQ=255)

                 tCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCaa                                                                           >  2:4140074/1‑91 (MQ=255)

                    tAATGCTGAGAACAAATGAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAatat                                                                        >  1:5683872/1‑91 (MQ=255)

                    tAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTTCTTAGATAATTTAATGAATCTCAGAACTCCTTTCGAAATGTATAAGCAatat                                                                        >  1:4662040/1‑91 (MQ=255)

                    tAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAatat                                                                        >  2:2702720/1‑91 (MQ=255)

                     aaTGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATAtt                                                                       >  1:1991054/1‑91 (MQ=255)

                      aTGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTa                                                                      <  2:1533684/91‑1 (MQ=255)

                       tGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTaa                                                                     >  1:4338346/1‑91 (MQ=255)

                        gCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAAc                                                                    <  1:3812579/91‑1 (MQ=255)

                          tGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACtt                                                                  >  2:120174/1‑91 (MQ=255)

                          tGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACtt                                                                  <  1:4563045/91‑1 (MQ=255)

                            agaACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTg                                                                <  1:3323538/91‑1 (MQ=255)

                            agaACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTg                                                                >  2:4956806/1‑91 (MQ=255)

                            agaACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTg                                                                <  2:3141014/91‑1 (MQ=255)

                              aaCAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGaa                                                              <  1:1009480/91‑1 (MQ=255)

                               aCAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGaaa                                                             <  2:4113452/91‑1 (MQ=255)

                                 aaaTCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAAt                                                           >  2:336336/1‑91 (MQ=255)

                                   aTCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATta                                                         >  1:2894159/1‑91 (MQ=255)

                                    tCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATtat                                                        >  1:3579052/1‑91 (MQ=255)

                                    tCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATtat                                                        >  1:559109/1‑91 (MQ=255)

                                     cAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATtata                                                       >  2:216566/1‑91 (MQ=255)

                                       aTAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACg                                                     >  2:4162418/1‑91 (MQ=255)

                                       aTAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACAATGAAAATTATACg                                                     <  2:107057/91‑1 (MQ=255)

                                        tAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGc                                                    <  2:906370/91‑1 (MQ=255)

                                        tAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGc                                                    <  2:2300603/91‑1 (MQ=255)

                                        tAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGc                                                    <  2:182581/91‑1 (MQ=255)

                                          accGTAAAGAGGAGTTGCTGAGATACTTTAATGAGTCTCAGAACTCCTTTTGAAACATATACGCAATATTAACTTTGAAAATTATACGaaa                                                  >  2:4891362/3‑91 (MQ=25)

                                          aaCGTAAAGAGGAGTTGCTGAGATAATTTAATGAGTCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCaa                                                  >  2:3477345/1‑91 (MQ=255)

                                          aaCGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCaa                                                  >  2:3975721/1‑91 (MQ=255)

                                          aaCGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCaa                                                  <  2:4240109/91‑1 (MQ=255)

                                            cGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAata                                                >  2:1365792/1‑91 (MQ=255)

                                             gTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAatat                                               <  1:3097650/91‑1 (MQ=255)

                                              tAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATAtt                                              <  2:4733567/91‑1 (MQ=255)

                                               aaaGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTa                                             >  2:2819745/1‑91 (MQ=255)

                                               aaaGAGGAGTTCCTGAGATAATTTAATGAATCTCAGAACTCTTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTa                                             <  2:5848059/91‑1 (MQ=255)

                                                 agagGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGCAAATTATACGCAATATTAAc                                           <  1:5352670/91‑1 (MQ=255)

                                                  gaggagTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACt                                          >  2:751293/1‑91 (MQ=255)

                                                   aggagTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACtt                                         <  1:3984568/91‑1 (MQ=255)

                                                   aggagTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACtt                                         >  1:2430854/1‑91 (MQ=255)

                                                   aggagTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACtt                                         <  1:5108530/91‑1 (MQ=255)

                                                    ggagTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAACGTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACttt                                        <  2:5683872/91‑1 (MQ=255)

                                                    ggagTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACttt                                        >  1:3012806/1‑91 (MQ=255)

                                                    ggagTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACttt                                        >  1:2320730/1‑91 (MQ=255)

                                                    ggagTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTATGAAAATTATACGCAATATTAACTTTGAAAAGTATACGCAATATTAACttt                                        >  2:3587434/1‑91 (MQ=255)

                                                     gagTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTg                                       >  2:2016193/1‑91 (MQ=255)

                                                       gTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGaa                                     <  1:2285765/91‑1 (MQ=255)

                                                       gTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGaa                                     <  1:994358/91‑1 (MQ=255)

                                                        ttGATGAGATAATTTAAAGAAGCTGAGATCAACTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGaaa                                    <  2:2573293/91‑1 (MQ=14)

                                                          gCTGAGATAATTTAATGAATCTCAGAACTGCATTTGAAAATTATACGCAATATTAACTTTGAAATTTATACGTAAGATTAACTTAGaacct                                  >  1:4909178/1‑88 (MQ=18)

                                                          gCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAt                                  >  2:3993849/1‑91 (MQ=255)

                                                          gCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAt                                  >  2:576741/1‑91 (MQ=255)

                                                          aactccttttgaaaattatacgcaatattaacTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAt                                  <  1:1094697‑M2/59‑1 (MQ=255)

                                                          aactccttttgaaaattatacgcaatattaacTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAt                                  >  1:3227668‑M2/33‑91 (MQ=255)

                                                           actccttttgaaaattatacgcaatattaacTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAtt                                 >  1:1275378‑M2/32‑91 (MQ=255)

                                                           actccttttgaaaattatacgcaatattaacTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAtt                                 >  2:1911637‑M2/32‑91 (MQ=255)

                                                              agaTAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATtata                              >  1:2387964/1‑91 (MQ=255)

                                                                aTAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAACTATACg                            >  2:5359826/1‑91 (MQ=255)

                                                                aTAATTTAATGAATCTCAGAACTACTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACg                            <  2:2494145/91‑1 (MQ=255)

                                                                 tAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGc                           <  1:58295/91‑1 (MQ=255)

                                                                 tAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGc                           <  1:414935/91‑1 (MQ=255)

                                                                   aTTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTTAAAATTATACGCaa                         >  2:5545164/1‑91 (MQ=255)

                                                                   aTTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCaa                         <  2:3012806/91‑1 (MQ=255)

                                                                    tttAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAat                        >  1:4532921/1‑91 (MQ=255)

                                                                    tttAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAat                        >  1:1617798/1‑91 (MQ=255)

                                                                       aaTGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATAtt                     >  2:2391262/1‑91 (MQ=255)

                                                                       aaTGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATAtt                     >  2:1675795/1‑91 (MQ=255)

                                                                        aTGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTa                    >  1:955889/1‑91 (MQ=255)

                                                                         tGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTaa                   >  1:2219130/1‑91 (MQ=255)

                                                                          gAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAAc                  >  2:4389120/1‑91 (MQ=255)

                                                                          aaaTCTCAGAATTACATTAGAAAATTATACTCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAAc                  <  2:856128/90‑1 (MQ=17)

                                                                            aTCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACtt                >  2:3531722/1‑91 (MQ=255)

                                                                              ctcAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTg              <  1:63284/91‑1 (MQ=255)

                                                                               tcAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGa             <  1:171820/91‑1 (MQ=255)

                                                                                cAGATCTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGaa            <  1:1492096/91‑1 (MQ=255)

                                                                                 aGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGaaa           >  2:5613926/1‑91 (MQ=255)

                                                                                  gAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGaaaa          >  1:5320262/1‑91 (MQ=255)

                                                                                      tCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTAg      >  2:1615292/1‑91 (MQ=255)

                                                                                       ccTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTAGa     >  2:514328/1‑91 (MQ=255)

                                                                                       acTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTAGa     <  2:2887531/90‑1 (MQ=255)

                                                                                         ttttGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTAGACg   >  1:2736904/1‑91 (MQ=255)

                                                                                          ttttAAAATTATACGCAATATTAAATTTGAAAATTATACGCAATATTAACTTTGAAGATTATACGCAATATTAACTTTGAAAATTAGACGt  <  2:3476457/91‑1 (MQ=255)

                                                                                          tttGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTAGACGt  <  2:4834442/91‑1 (MQ=255)

                                                                                          tttGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTGGAAAATTATACGCAATATTAACTTTGAAAATTAGACGt  <  1:1925570/91‑1 (MQ=255)

ATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTAGACGT  >  USA300TCH1516_ALE/1279885‑1280065

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.