New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1955657194 (0.650)20 (0.080) 10/138 NT 9.8% intergenic (‑711/+411) gdmA/lukDv_2 Lantibiotic gallidermin/Leucotoxin LukDv
?USA300TCH1516_ALE = 1955663 201 (0.780)intergenic (‑717/+405) gdmA/lukDv_2 Lantibiotic gallidermin/Leucotoxin LukDv

Only 100 of 302 total aligned reads displayed.

GAAGGCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCTAGTTATTC  >  USA300TCH1516_ALE/1955573‑1955753
                                                                                          |                                                                                          
 aaGGCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAg                                                                                           >  2:5727892‑M2/1‑90 (MQ=255)
 aaGGCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAg                                                                                           <  2:4131710‑M2/91‑2 (MQ=255)
  aGGCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAgg                                                                                          >  2:4500388‑M2/1‑89 (MQ=255)
  aGGCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAgg                                                                                          >  1:471296‑M2/1‑89 (MQ=255)
  aGGCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAgg                                                                                          >  1:394950‑M2/1‑89 (MQ=255)
    gCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAggct                                                                                        >  1:1652892‑M2/1‑87 (MQ=255)
    gCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAggct                                                                                        >  2:1317302‑M2/1‑87 (MQ=255)
    gCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAggct                                                                                        >  1:984185‑M2/1‑87 (MQ=255)
     cTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAggctc                                                                                       <  2:4636255‑M2/91‑6 (MQ=255)
      tAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATACTTAAAAAGACAAATAGAGCCCTTTCAggctct                                                                                      <  1:3350538‑M2/91‑7 (MQ=255)
       aaTTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAggctcta                                                                                     <  2:284144‑M2/91‑8 (MQ=255)
         ttATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAggctctatt                                                                                   >  2:5639099‑M2/1‑82 (MQ=255)
          tataAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAggctctattt                                                                                  >  1:2356023‑M2/1‑81 (MQ=255)
           ataAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAggctctatttg                                                                                 <  2:3098914‑M2/91‑12 (MQ=255)
           ataAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAggctctatttg                                                                                 <  1:5180748‑M2/91‑12 (MQ=255)
            taAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGc                                                                                <  2:930227/91‑1 (MQ=255)
             aaaaaTACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCt                                                                               >  2:1629920/1‑91 (MQ=255)
              aaaaTACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTg                                                                              >  1:895977/1‑91 (MQ=255)
              aaaaTACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTg                                                                              <  2:332748/91‑1 (MQ=255)
              aaaaTACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTg                                                                              <  2:4864125/91‑1 (MQ=255)
                  tACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATc                                                                          <  1:1718596/91‑1 (MQ=255)
                  tACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATc                                                                          >  2:3961779/1‑91 (MQ=255)
                  tACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATc                                                                          <  1:4636011/91‑1 (MQ=255)
                    ccTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCt                                                                        >  2:2326555/1‑91 (MQ=255)
                     cTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCtt                                                                       <  2:4788735/91‑1 (MQ=255)
                     cTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTAAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCtt                                                                       >  1:4406499/1‑91 (MQ=255)
                      tGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTa                                                                      >  1:1302623/1‑91 (MQ=255)
                      tGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTa                                                                      >  2:595405/1‑91 (MQ=255)
                       ggCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTaa                                                                     >  1:5579497/1‑91 (MQ=255)
                          gATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTaacaa                                                                  <  1:2672992/91‑1 (MQ=255)
                           aTTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTaacaac                                                                 <  2:1209181/91‑1 (MQ=255)
                           aTTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTaacaac                                                                 <  1:5673000/91‑1 (MQ=255)
                            ttAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAacaaca                                                                <  1:1618517/91‑1 (MQ=255)
                             taataaACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAg                                                               >  1:3323243/1‑91 (MQ=255)
                              aataaACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAgc                                                              <  1:1909708/91‑2 (MQ=255)
                              aataaACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGa                                                              >  2:4226589/1‑91 (MQ=255)
                              aataaACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGa                                                              <  1:154555/91‑1 (MQ=255)
                              aataaACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGa                                                              <  2:654782/91‑1 (MQ=255)
                                taaACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAg                                                            >  1:1111250/1‑91 (MQ=255)
                                taaACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAg                                                            >  2:2858633/1‑91 (MQ=255)
                                taaACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAg                                                            >  1:621047/1‑91 (MQ=255)
                                taaACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAg                                                            <  2:2157879/91‑1 (MQ=255)
                                taaACTGTATCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAg                                                            <  2:5148946/91‑1 (MQ=255)
                                 aaaCTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGc                                                           >  1:211963/1‑91 (MQ=255)
                                   aCTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTg                                                         <  1:3455458/91‑1 (MQ=255)
                                    cTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGt                                                        <  1:1862635/91‑1 (MQ=255)
                                     tGTTTCCGATTTTTAGCAATTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTAATTGCTGTATCCTTAACAACAGAGGCTGtt                                                       <  2:2678387/91‑1 (MQ=25)
                                      gTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTa                                                      <  1:3144773/91‑1 (MQ=255)
                                      gTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTa                                                      <  2:1871102/91‑1 (MQ=255)
                                      gTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTa                                                      >  1:4079006/1‑91 (MQ=255)
                                        ttCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTaaa                                                    <  1:82213/91‑1 (MQ=255)
                                        ttCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTaaa                                                    >  1:274683/1‑91 (MQ=255)
                                         tCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTaaaa                                                   >  1:5462591/1‑91 (MQ=255)
                                         tCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTaaaa                                                   >  1:4582252/1‑91 (MQ=255)
                                            gTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTa                                                >  1:4812980/1‑91 (MQ=255)
                                                tttAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCg                                            <  2:2049756/91‑1 (MQ=255)
                                                 ttAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGt                                           >  2:699792/1‑91 (MQ=255)
                                                  tAGCACTTAATATATTTAAAAAGACAAATAGAGCCTGAAAGggctctatttgtctttttaaatatattaagtgctaaaaaacggaaacagt                                          >  1:2431190‑M2/1‑41 (MQ=255)
                                                   aGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCt                                         <  2:2593307/91‑1 (MQ=255)
                                                   aGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCt                                         >  2:3529921/1‑91 (MQ=255)
                                                   aGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCt                                         >  1:3810167/1‑91 (MQ=255)
                                                    gCACTCAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCtt                                        >  2:1425770/1‑91 (MQ=255)
                                                     cACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCttt                                       >  1:5302390/1‑91 (MQ=255)
                                                      aCTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCtttt                                      >  1:3870487/1‑91 (MQ=255)
                                                      aCTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCtttt                                      <  1:2007408/91‑1 (MQ=255)
                                                       cTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTc                                     <  1:2515191/91‑1 (MQ=255)
                                                           atatatTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACaa                                 <  2:2428884/91‑1 (MQ=255)
                                                              tatTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCa                              <  2:5817810/91‑1 (MQ=255)
                                                              tatTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCa                              >  2:3209554/1‑91 (MQ=255)
                                                                tttAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTAACCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCaaa                            >  1:5613575/1‑91 (MQ=255)
                                                                 ttAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACGCGTCTTTTCACAACCAAAg                           >  1:4496473/1‑91 (MQ=255)
                                                                 ttAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGGCTTTTCACAACCAAAg                           <  1:844119/91‑1 (MQ=255)
                                                                     aaaGACAAATAGAGCCCTTTCAggctctatttgtctttttaaatatattaagtgctaaaaaacggaaacagtttattaatcgccaggtatt                       <  1:5325938‑M2/91‑70 (MQ=255)
                                                                     aaaGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTAc                       <  1:1011821/91‑1 (MQ=255)
                                                                     aaaGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTAc                       <  2:5508345/91‑1 (MQ=255)
                                                                      aaGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACa                      >  2:1078031/1‑91 (MQ=255)
                                                                      aaGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACAAAAGCTaaa                      <  2:2460592/91‑3 (MQ=255)
                                                                         aCAAATAGAGCCCTTTCAggctctatttgtctttttaaatatattaagtgctaaaaaacggaaacagtttattaatcgccaggtattttta                   <  1:1274322‑M2/91‑74 (MQ=255)
                                                                            aaTAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAg                >  2:2763102/1‑91 (MQ=255)
                                                                            aaTAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAg                >  2:500198/1‑91 (MQ=255)
                                                                            aaTAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAg                <  1:4340768/91‑1 (MQ=255)
                                                                            aaTAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTCTTCACAACCAAAGCTACAAAAAAg                >  1:5544734/1‑91 (MQ=255)
                                                                             aTAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGa               >  1:4142681/1‑91 (MQ=255)
                                                                              tAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTCTCACAACCAAAGCTACAAAAAAGAt              <  2:5579497/91‑1 (MQ=255)
                                                                                gagCCCTTTCAggctctatttgtctttttaaatatattaagtgctaaaaaacggaaacagtttattaatcgccaggtatttttataattag            <  2:2984041‑M2/91‑81 (MQ=255)
                                                                                gagCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATgg            <  2:2219648/91‑1 (MQ=255)
                                                                                 agCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGc           >  1:4221375/1‑91 (MQ=255)
                                                                                 agCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGc           <  2:2919827/91‑1 (MQ=255)
                                                                                 agCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCCTCTTTTCACAACCAAAGCTACAAAAAAGATGGc           <  1:5821118/91‑1 (MQ=255)
                                                                                  gCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAATCAAAGCTACAAAAAAGATGGCt          <  2:4453576/91‑1 (MQ=255)
                                                                                  gCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCt          >  2:42785/1‑91 (MQ=255)
                                                                                    ccTTTCAggctctatttgtctttttaaatatattaagtgctaaaaaacggaaacagtttattaatcgccaggtatttttatacttagcctt        <  2:1485028‑M2/91‑85 (MQ=255)
                                                                                    ccTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCTAg        >  1:2890592/1‑91 (MQ=255)
                                                                                    ccTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCTAg        <  2:1792902/91‑1 (MQ=255)
                                                                                      tttCAggctctatttgtctttttaaatatattaagtgctaaaaaacggaaacagtttattaatcgccaggtatttttataattagccttct      <  2:1567933‑M2/91‑87 (MQ=255)
                                                                                      tttCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCTAGtt      <  2:3810167/91‑1 (MQ=255)
                                                                                       ttCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCTAGTTa     <  2:1721840/91‑1 (MQ=255)
                                                                                          aGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCTAGTTATTc  <  2:3148466/91‑1 (MQ=255)
                                                                                          aGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCTAGTTATTc  <  1:724054/91‑1 (MQ=255)
                                                                                          aGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCTAGTTATTc  <  1:323793/91‑1 (MQ=255)
                                                                                          |                                                                                          
GAAGGCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCTAGTTATTC  >  USA300TCH1516_ALE/1955573‑1955753

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.