BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 775565	227 (0.760)	12 (0.050)	10/142	NT	5.3%	coding (549/1182 nt)	nagA	N‑acetylglucosamine‑6‑phosphate deacetylase
*	?	USA300TCH1516_ALE	= 775573	232 (0.880)	12 (0.050)	10/142	NT	5.3%	coding (557/1182 nt)	nagA	N‑acetylglucosamine‑6‑phosphate deacetylase

Only 100 of 334 total aligned reads displayed.

TCCGCAATACGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACGAAGAAGCA  >  USA300TCH1516_ALE/775475‑775655

tCCGCAATACGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT                                                                                             >  2:5089690‑M1/1‑91 (MQ=255)

 ccGCAATACGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTg                                                                                            <  1:2747479/91‑1 (MQ=255)

 ccGCAATACGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTg                                                                                            <  2:5043123/91‑1 (MQ=255)

 ccGCAATACGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTg                                                                                            <  1:2201980/91‑1 (MQ=255)

 ccGCAATACGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTg                                                                                            <  1:4263807/91‑1 (MQ=255)

  cGCAATACGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTtc                                                                                           >  2:2873323‑M1/1‑89 (MQ=255)

  cGCAATACGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑a                                                                                          >  2:4285439/1‑91 (MQ=255)

  cGCAATACGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑a                                                                                          >  1:5028828/1‑91 (MQ=255)

   gCAATACGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑aa                                                                                         >  1:3221012/1‑91 (MQ=255)

    cAATACGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAg                                                                                        >  1:4730405/1‑91 (MQ=255)

    cAATACGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAg                                                                                        >  1:5209355/1‑91 (MQ=255)

    cAATACGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGCTTGCACCTG‑AAg                                                                                        >  2:3720889/1‑91 (MQ=255)

     aaTACGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGt                                                                                       <  1:2491043/91‑1 (MQ=255)

       tACGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTtcaactt                                                                                      <  1:1917891‑M1/91‑8 (MQ=255)

       tACGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTg                                                                                     <  2:1432297/91‑1 (MQ=255)

        aCGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTtcaacttc                                                                                     <  1:5433629‑M1/91‑9 (MQ=255)

        aCGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTtcaacttc                                                                                     <  1:3617256‑M1/91‑9 (MQ=255)

          gTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAag                                                                                  >  2:726291‑M2/1‑89 (MQ=255)

           ttGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAagg                                                                                 >  2:340663‑M2/1‑88 (MQ=255)

            tGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAaggt                                                                                <  2:4379453‑M2/91‑5 (MQ=255)

            tGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAaggt                                                                                <  2:605388‑M2/91‑5 (MQ=255)

             gTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑CAGTTGAaggtg                                                                               <  1:37351‑M2/91‑6 (MQ=255)

                cGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAaggtgcaa                                                                            >  1:53755‑M2/1‑83 (MQ=255)

                 gCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAaggtgcaaa                                                                           >  2:2686507‑M2/1‑82 (MQ=255)

                  cccATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCaaaa                                                                          <  2:3526917/91‑1 (MQ=255)

                   ccATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAaag                                                                         >  2:4341996/1‑91 (MQ=255)

                    cATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAaaga                                                                        <  2:1754833/91‑1 (MQ=255)

                     aTTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAaagaa                                                                       <  2:3376049/91‑1 (MQ=255)

                        tATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAgcg                                                                    <  1:4534389/91‑1 (MQ=255)

                         aTCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAgcgc                                                                   <  1:1549872/91‑1 (MQ=255)

                          tCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCt                                                                  <  2:5723084/91‑1 (MQ=255)

                          tCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCt                                                                  <  2:2898435/91‑1 (MQ=255)

                            gATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTTCAACTTCAggtgcaaacgtcataatct                                                                 >  1:1777346‑M2/1‑72 (MQ=255)

                               aaaaTTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGaaa                                                             >  2:2946859/1‑91 (MQ=255)

                                  aTTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGt                                                          >  1:1397946/1‑91 (MQ=255)

                                  aTTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGt                                                          >  1:688070/1‑91 (MQ=255)

                                    tAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGtat                                                        <  2:3156526/91‑1 (MQ=255)

                                     aaaCATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGtata                                                       >  1:4200107/1‑91 (MQ=255)

                                      aaCATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGCCGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATaa                                                      >  2:5436382/1‑91 (MQ=255)

                                      aaCATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATaa                                                      >  2:3810918/1‑91 (MQ=255)

                                      aaCATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATaa                                                      >  2:3239183/1‑91 (MQ=255)

                                          ttttCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGAt                                                  >  2:1590999/1‑91 (MQ=255)

                                           tttCAAGCGACTGCTAACGGATTAATAAAGATTATGACCTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATg                                                 >  1:5626983/1‑91 (MQ=255)

                                            ttCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGa                                                >  1:808886/1‑91 (MQ=255)

                                             tCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGAc                                               >  1:4445525/1‑91 (MQ=255)

                                               aaGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACat                                             <  1:2977372/91‑1 (MQ=255)

                                                 gagaCTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACatta                                           <  2:28138/91‑1 (MQ=255)

                                                  agaCTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACattat                                          >  2:1304797/1‑91 (MQ=255)

                                                  agaCTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACattat                                          >  2:4570477/1‑91 (MQ=255)

                                                  agaCTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACattat                                          >  1:1056674/1‑91 (MQ=255)

                                                   gaCTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACattatt                                         >  2:260855/1‑91 (MQ=255)

                                                    aCTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTAttt                                        >  1:3917605/1‑91 (MQ=255)

                                                    aCTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTAttt                                        <  2:1658739/91‑1 (MQ=255)

                                                    aCTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATAACATTAttt                                        <  2:5405964/91‑1 (MQ=255)

                                                     cTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTAtttt                                       >  1:3937415/1‑91 (MQ=255)

                                                     cTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTAtttt                                       <  1:4766682/91‑1 (MQ=255)

                                                      tGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTAttttt                                      <  2:3057180/91‑1 (MQ=255)

                                                      tGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTAttttt                                      <  2:4779510/91‑1 (MQ=255)

                                                       gCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTAttgttt                                     >  2:1167129/1‑91 (MQ=255)

                                                        cTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTc                                    >  1:1284519/1‑91 (MQ=255)

                                                        cTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTc                                    >  2:696173/1‑91 (MQ=255)

                                                        cTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTc                                    <  1:1533447/91‑1 (MQ=255)

                                                        cTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTc                                    <  1:99317/91‑1 (MQ=255)

                                                          aaCGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCaa                                  >  2:247537/1‑91 (MQ=255)

                                                          aaCGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCaa                                  >  1:4656907/1‑91 (MQ=255)

                                                          aaCGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCaa                                  >  1:856286/1‑91 (MQ=255)

                                                           aCGGATTAATAAAGATTATGACGTTTGCACGTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAAt                                 <  2:5798732/91‑1 (MQ=255)

                                                            cGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAAtt                                <  2:2428177/91‑1 (MQ=255)

                                                               aTTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGt                             <  2:3645444/91‑1 (MQ=255)

                                                               aTTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGt                             <  1:5863478/91‑1 (MQ=255)

                                                                ttAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTc                            >  1:5469274/1‑91 (MQ=255)

                                                                 taataaAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCa                           >  1:18798/1‑91 (MQ=255)

                                                                  aataaAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCAt                          <  1:2587742/91‑1 (MQ=255)

                                                                    taaAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATAc                        <  2:1868617/91‑1 (MQ=255)

                                                                      aaGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAg                      >  1:4327520/1‑91 (MQ=255)

                                                                      aaGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAg                      >  1:307948/1‑91 (MQ=255)

                                                                      aaGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAg                      >  2:4436790/1‑91 (MQ=255)

                                                                       aGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGt                     <  1:3423405/91‑1 (MQ=255)

                                                                        gATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTa                    >  2:1243796/1‑91 (MQ=255)

                                                                            aTGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCaa                >  1:901372/1‑91 (MQ=255)

                                                                            aTGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGACGACATTATTTTTTCAATTGGTCATACAGTAGCaa                <  2:4910127/91‑1 (MQ=255)

                                                                             tGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCGATTGGTCATACAGTAGCAAc               >  1:2415305/1‑91 (MQ=255)

                                                                             tGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAAc               >  2:5162496/1‑91 (MQ=255)

                                                                             tGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAAc               >  2:2126551/1‑91 (MQ=255)

                                                                              gACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACa              >  1:3298907/1‑91 (MQ=255)

                                                                              gACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACa              <  2:5209355/91‑1 (MQ=255)

                                                                               aCGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACAt             >  1:2254278/1‑91 (MQ=255)

                                                                               aCGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACAt             <  2:2339180/91‑1 (MQ=255)

                                                                               aCGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACAt             >  1:4081643/1‑91 (MQ=255)

                                                                                  tttGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACg          <  1:3548008/91‑1 (MQ=255)

                                                                                  tttGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACg          <  1:596761/91‑1 (MQ=255)

                                                                                  tttGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACg          <  2:2009390/91‑1 (MQ=255)

                                                                                   ttGCACCTtcaacttcaggtgcaaacgtcataatctttattaatccgttagcagtctcttgaaaatgtttaattttatcgataaatgggcg          <  1:378081‑M1/91‑84 (MQ=255)

                                                                                      cACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACgaaga      >  2:4617821/1‑91 (MQ=255)

                                                                                       ccctgcaacttcaggtgcaaacgtcgtaatctttattaatccgttagcagtctcttgaaaatgtttaattttatcgataaatgggcgtaca      <  2:2674‑M1/90‑88 (MQ=255)

                                                                                       aCCTG‑AAGTTGAaggtgcaaacgtcataatctttattaatccgttagcagtctcttgaaaatgtttaattttatcgataaatgggcgtaca     <  1:2873323‑M2/91‑80 (MQ=255)

                                                                                       aCCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACgaagaa     >  1:480328/1‑91 (MQ=255)

                                                                                       aCCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTGTTTCAATTGGTCATACAGTAGCAACATACgaagaa     <  2:5651083/91‑1 (MQ=255)

                                                                                        ccTtcaacttcaggtgcaaacgtcataatctttattaatccgttagcagtctcttgaaaatgtttaattttatcgataaatgggcgtacaa     >  1:216941‑M1/1‑3 (MQ=255)

                                                                                          tG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACGAAGAAGCa  >  2:2862841/1‑91 (MQ=255)

TCCGCAATACGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTG‑AAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACGAAGAAGCA  >  USA300TCH1516_ALE/775475‑775655

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.