BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 775565	227 (0.760)	12 (0.050)	10/142	NT	5.3%	coding (549/1182 nt)	nagA	N‑acetylglucosamine‑6‑phosphate deacetylase
*	?	USA300TCH1516_ALE	= 775573	232 (0.880)	12 (0.050)	10/142	NT	5.3%	coding (557/1182 nt)	nagA	N‑acetylglucosamine‑6‑phosphate deacetylase

Only 100 of 298 total aligned reads displayed.

ACGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACGAAGAAGCAGTTGAAGC  >  USA300TCH1516_ALE/775483‑775663

aCGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGa                                                                                            <  2:5098745/91‑1 (MQ=255)

 cGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAa                                                                                           <  2:132711‑M2/91‑2 (MQ=255)

  gTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAag                                                                                          >  2:726291‑M2/1‑89 (MQ=255)

   ttGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAagg                                                                                         >  2:340663‑M2/1‑88 (MQ=255)

    tGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAaggt                                                                                        <  2:5066429‑M2/91‑5 (MQ=255)

     gTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAaggtg                                                                                       >  2:2467720‑M2/1‑86 (MQ=255)

         gCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAaggtgcaaa                                                                                   >  1:3288997‑M2/1‑82 (MQ=255)

          cccATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCaaaa                                                                                  <  2:3748289/91‑1 (MQ=255)

          cccATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCaaaa                                                                                  <  2:3526917/91‑1 (MQ=255)

              tttATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAaagaag                                                                              >  1:3972195/1‑91 (MQ=255)

               ttATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCTTCAACTTCAggtgcaaacgtcat                                                                              >  1:4744220‑M2/1‑77 (MQ=255)

                tATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAgcg                                                                            <  1:4534389/91‑1 (MQ=255)

                 aTCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAgcgc                                                                           <  2:101919/91‑1 (MQ=255)

                 aTCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAgcgc                                                                           >  2:2898046/1‑91 (MQ=255)

                  tCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCt                                                                          >  2:3819738/1‑91 (MQ=255)

                  tCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCt                                                                          <  2:5723239/91‑1 (MQ=255)

                       aaaaTTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGaaa                                                                     >  1:677186/1‑91 (MQ=255)

                         aaTTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACg                                                                   <  2:3357276/91‑1 (MQ=255)

                         aaTTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACg                                                                   <  2:1743754/91‑1 (MQ=255)

                           ttAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGta                                                                 <  1:709114/91‑1 (MQ=255)

                            tAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGtat                                                                <  2:3156526/91‑1 (MQ=255)

                             aaaCATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGtata                                                               >  1:4200107/1‑91 (MQ=255)

                             aaaCATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGtata                                                               >  2:626448/1‑91 (MQ=255)

                              aaCATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATaa                                                              >  1:5573929/1‑91 (MQ=255)

                              aaCATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATaa                                                              >  2:3239183/1‑91 (MQ=255)

                                   tttCAAGAGACAGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATg                                                         <  2:5836506/91‑1 (MQ=255)

                                    ttCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGa                                                        >  1:5229778/1‑91 (MQ=255)

                                    ttCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAACAAGCGCTTGAAACGTATAAAGATGa                                                        >  2:5434549/1‑91 (MQ=255)

                                     tCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGAc                                                       >  1:4445525/1‑91 (MQ=255)

                                      cAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACa                                                      <  2:5698567/91‑1 (MQ=255)

                                       aaGAGAGTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACat                                                     <  2:5358867/91‑1 (MQ=255)

                                       aaGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACat                                                     <  2:4500920/91‑1 (MQ=255)

                                         gagaCTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACatta                                                   <  2:28138/91‑1 (MQ=255)

                                          agaCTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACattat                                                  >  1:1056674/1‑91 (MQ=255)

                                           gaCTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGAAAAAGAAGCGCTTGAAACGTATAAAGATGACattatt                                                 >  2:2933069/1‑91 (MQ=255)

                                            aCTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTAttt                                                <  2:1658739/91‑1 (MQ=255)

                                            aCTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTAttt                                                >  1:1448939/1‑91 (MQ=255)

                                              tGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTAttttt                                              <  2:473974/91‑1 (MQ=255)

                                              tGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTAttttt                                              >  2:1597030/1‑91 (MQ=255)

                                              tGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTAttttt                                              <  2:263946/91‑1 (MQ=255)

                                              tGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTAttttt                                              >  1:2240157/1‑91 (MQ=255)

                                              tGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTAttttt                                              <  2:3057180/91‑1 (MQ=255)

                                               gCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTAtttttt                                             >  1:3929006/1‑91 (MQ=255)

                                                cTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTc                                            >  1:1284519/1‑91 (MQ=255)

                                                 tAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCa                                           <  1:541460/91‑1 (MQ=255)

                                                  aaCGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCaa                                          >  1:856286/1‑91 (MQ=255)

                                                  aaCGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCaa                                          >  1:4656907/1‑91 (MQ=255)

                                                   aCGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAAt                                         <  1:3741292/91‑1 (MQ=255)

                                                     ggATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTg                                       >  2:480419/1‑91 (MQ=255)

                                                      gATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTgg                                      <  2:2567673/91‑1 (MQ=255)

                                                      gATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTgg                                      <  2:235722/91‑1 (MQ=255)

                                                       aTTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGt                                     <  2:3645444/91‑1 (MQ=255)

                                                       aTTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGt                                     <  1:5863478/91‑1 (MQ=255)

                                                        ttAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTc                                    >  1:5469274/1‑91 (MQ=255)

                                                         taataaAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCa                                   >  1:18798/1‑91 (MQ=255)

                                                           ataaAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATa                                 >  1:284651/1‑91 (MQ=255)

                                                            taaAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATAc                                >  2:1781960/1‑91 (MQ=255)

                                                            taaAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATAc                                >  2:1292420/1‑91 (MQ=255)

                                                              aaGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAg                              >  1:307948/1‑91 (MQ=255)

                                                              aaGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAg                              >  1:3873392/1‑91 (MQ=255)

                                                               aGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGt                             <  1:3423405/91‑1 (MQ=255)

                                                               aGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGt                             >  2:4418677/1‑91 (MQ=255)

                                                               aGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGt                             <  1:4314395/91‑1 (MQ=255)

                                                               aGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGt                             <  1:500696/91‑1 (MQ=255)

                                                                gATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTa                            >  2:2049676/1‑91 (MQ=255)

                                                                 aTTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAg                           <  1:1784353/91‑1 (MQ=255)

                                                                  ttATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGc                          <  1:1963397/91‑1 (MQ=255)

                                                                  ttATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGc                          <  1:2448858/91‑1 (MQ=255)

                                                                  ttATGACGGTTGCACCT‑GAAGTGGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGc                          <  2:2684040/91‑1 (MQ=255)

                                                                   tATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCa                         <  2:1178301/91‑1 (MQ=255)

                                                                   tATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCa                         <  2:4314381/91‑1 (MQ=255)

                                                                    aTGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCaa                        >  1:972665/1‑91 (MQ=255)

                                                                    aTGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCaa                        >  2:2268959/1‑91 (MQ=255)

                                                                    aTGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCaa                        >  1:139043/1‑91 (MQ=255)

                                                                     tGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAAc                       >  2:2126551/1‑91 (MQ=255)

                                                                     tGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAAc                       >  2:4361227/1‑91 (MQ=255)

                                                                     tGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAAc                       >  2:5162496/1‑91 (MQ=255)

                                                                      gACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACa                      <  2:5209355/91‑1 (MQ=255)

                                                                      gACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACa                      >  1:3510578/1‑91 (MQ=255)

                                                                       aCGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACAt                     <  2:4601875/91‑1 (MQ=255)

                                                                       aCGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACAt                     >  1:4081643/1‑91 (MQ=255)

                                                                         gTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATAc                   <  1:2877262/91‑1 (MQ=255)

                                                                          tttGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACg                  <  1:596761/91‑1 (MQ=255)

                                                                              cACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACgaaga              >  2:4941188/1‑91 (MQ=255)

                                                                               aCCT‑GAAGTTGAAGGTGCAAAAGGAGCGCTTGAAACGTATAAAGAGCACATTATTGTTTCAATTGGTCATACAGTAGCAACATACgaagaa             <  2:5650751/91‑1 (MQ=255)

                                                                               aCCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACgaagaa             >  1:1534120/1‑91 (MQ=255)

                                                                               aCCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACgaagaa             >  2:1993628/1‑91 (MQ=255)

                                                                                ccT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACGaagaag            <  1:878976/91‑1 (MQ=255)

                                                                                ccT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACGaagaag            >  1:2569794/1‑91 (MQ=255)

                                                                                 cT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACGAAGAAGc           >  2:2975725/1‑91 (MQ=255)

                                                                                  t‑GAAGTTGAaggtgcaaacgtcataatctttattaatccgttagcagtctcttgaaaatgtttaattttatcgataaatgggcgtacaacg          <  1:4767169‑M2/91‑83 (MQ=255)

                                                                                  t‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACGAAGAAGCa          >  2:2862841/1‑91 (MQ=255)

                                                                                  t‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTCTTTCAATTGGTCACACAGTAGCAACATACGAAGAAGCa          >  2:692797/1‑91 (MQ=255)

                                                                                    gAAGTTGAaggtgcaaacgtcataatctttattaatccgttagcagtctcttgaaaatgtttaattttatcgataaatgggcgtacaacgt         <  1:5433988‑M2/91‑84 (MQ=255)

                                                                                    gAAGTTGAaggtgcaaacgtcataatctttattaatccgttagcagtctcttgaaaatgtttaattttatcgataaatgggcgtacaacgt         <  1:3617256‑M2/91‑84 (MQ=255)

                                                                                     aaGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACGAAGAAGCAGt        <  1:2334430/91‑1 (MQ=255)

                                                                                      aGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACGAAGAAGCAGtt       >  2:1424507/1‑91 (MQ=255)

                                                                                      aGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACGAAGAAGCAGtt       <  1:3563000/91‑1 (MQ=255)

                                                                                        ttGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACGAAGAAGCAGTTGa     <  1:4340666/91‑1 (MQ=255)

                                                                                         tGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACGAAGAAGCAGTTGaa    >  1:1707495/1‑91 (MQ=255)

ACGTTGTACGCCCATTTATCGATAAAATTAAACATTTTCAAGAGACTGCTAACGGATTAATAAAGATTATGACGTTTGCACCT‑GAAGTTGAAGGTGCAAAAGAAGCGCTTGAAACGTATAAAGATGACATTATTTTTTCAATTGGTCATACAGTAGCAACATACGAAGAAGCAGTTGAAGC  >  USA300TCH1516_ALE/775483‑775663

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.