BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2693379	249 (0.830)	14 (0.060)	9/136	NT	6.2%	intergenic (+50/+306)	mtrR/rocA	HTH‑type transcriptional regulator MtrR/1‑pyrroline‑5‑carboxylate dehydrogenase
*	?	USA300TCH1516_ALE	= 2693404	212 (0.840)	14 (0.060)	9/136	NT	6.2%	intergenic (+75/+281)	mtrR/rocA	HTH‑type transcriptional regulator MtrR/1‑pyrroline‑5‑carboxylate dehydrogenase

Only 100 of 488 total aligned reads displayed.

ATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACT  >  USA300TCH1516_ALE/2693289‑2693469

  aaCATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAgt‑gt                                                                                          <  2:2913240/91‑1 (MQ=255)

  aaCATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAgt‑gt                                                                                          <  2:4590012/91‑1 (MQ=255)

   aCATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTa                                                                                         <  1:5488742/91‑1 (MQ=255)

   aCATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTa                                                                                         <  1:1348619/91‑1 (MQ=255)

   aCATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGACGAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTa                                                                                         <  2:5676873/91‑1 (MQ=255)

     aTTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTaca                                                                                       >  1:1032932/1‑91 (MQ=255)

     aTTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTaca                                                                                       >  2:3141519/1‑91 (MQ=255)

      ttttCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTacac                                                                                      <  2:4945811/91‑1 (MQ=255)

        ttCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGt                                                                                    >  2:2386243/1‑91 (MQ=255)

        tgccATAGAGTAATCAATATTAACAGTAAATAGTAGATGAGAAACTCATGAGCCTTACCAACATTCATAAT‑AAAACCGATAGT‑GTACACGt                                                                                    <  2:4385398/89‑1 (MQ=255)

           cATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTaa                                                                                 >  2:2433267/1‑91 (MQ=255)

           cATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTaa                                                                                 <  1:3127956/91‑1 (MQ=255)

            aTAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAAt                                                                                <  2:2685819/91‑1 (MQ=255)

               gATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGaa                                                                             <  1:531438/91‑1 (MQ=255)

               aaTTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGaa                                                                             <  1:2819328/90‑1 (MQ=255)

                 ttttcttcatagtttatgtgttgtctatcagttgttttaatagcgataagcacgataaaaataAAAAACGATAGTAGTACACGTTAATGaa                                                                             >  1:5554455‑M1/64‑91 (MQ=255)

                 ttAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAAtt                                                                           <  1:3183828/91‑1 (MQ=255)

                   aaTCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCg                                                                         <  1:4372976/91‑1 (MQ=255)

                    aTCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCgt                                                                        >  2:5034646/1‑91 (MQ=255)

                     tCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCgtg                                                                       >  1:2759427/1‑91 (MQ=255)

                     tCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCgtg                                                                       >  2:1467316/1‑91 (MQ=255)

                     tCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCgtg                                                                       <  1:2624757/91‑1 (MQ=255)

                      cAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCgtgt                                                                      <  2:5812370/91‑1 (MQ=255)

                       aaTATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGta                                                                     <  2:1947571/91‑1 (MQ=255)

                        atatTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGtac                                                                    >  2:818925/1‑91 (MQ=255)

                         tatTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGtact                                                                   >  2:3626629/1‑91 (MQ=255)

                          atTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTagtacacgaattcattaacgtgtaca                                                                   <  1:4614394‑M1/91‑27 (MQ=255)

                           ttAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTac                                                                 >  2:4325617‑M2/1‑89 (MQ=255)

                              aGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAACGATAGTagtacacgaattcattaacgtgtacacta                                                                <  1:5644994‑M1/91‑30 (MQ=255)

                              aGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTactat                                                              <  1:1542229‑M2/91‑6 (MQ=255)

                              aGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTactat                                                              <  1:953995‑M2/91‑6 (MQ=255)

                               gATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTactatc                                                             >  1:5702798‑M2/1‑85 (MQ=255)

                                aTTAAATATTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTgtacacgaattcattaacgtgtacactatcgt                                                             <  2:1165712‑M1/91‑33 (MQ=255)

                                aTTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTactatcg                                                            <  2:1820823‑M2/91‑8 (MQ=255)

                                 ttAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTactatcgt                                                           >  1:3554729‑M2/1‑83 (MQ=255)

                                  tAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTactatcgtt                                                          <  2:1244449‑M2/91‑10 (MQ=255)

                                  tAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGCACTactatcgtt                                                          <  2:3754171‑M2/91‑10 (MQ=255)

                                   aaaTAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTactatcgttt                                                         <  1:624814‑M2/91‑11 (MQ=255)

                                    actagtagATGAGAAACTCATGAGCTTTACCAACGTTCATAAT‑AAACACGATAGT‑CTACACGTTAATGAAGTCGTGTACTACTATCGtctt                                                        >  2:4898211/3‑91 (MQ=255)

                                    aaTAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTactatcgtttt                                                        <  2:5728022‑M2/91‑12 (MQ=255)

                                    aaTAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTactatcgtttt                                                        <  2:1131903‑M2/91‑12 (MQ=255)

                                      tagtagATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTgtacacgaattcattaacgtgtacactatcgtttttat                                                       <  1:4777250‑M1/91‑39 (MQ=255)

                                      tagtagATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGtttttt                                                      >  1:3734241/1‑91 (MQ=255)

                                       agtagATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTttttta                                                     >  1:1832446/1‑91 (MQ=255)

                                        gtagATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTtttttat                                                    <  1:4688644/91‑1 (MQ=255)

                                         tagATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTtttttatt                                                   <  1:2322484/91‑1 (MQ=255)

                                         gtatcagttgttttaatagcgataagcacgataaaaataAAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTtttttat                                                    >  1:4340803‑M1/40‑91 (MQ=255)

                                           atcagttgttttaatagcgataagcacgataaaaataAAAAACGATAGT‑GTACACGCTAATGAATTCGTGTACTACTATCGTtttttattt                                                  >  1:5397370‑M1/38‑91 (MQ=255)

                                            aTGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTtttttattttt                                                >  2:202970/1‑91 (MQ=255)

                                             tGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTtttttattttta                                               >  2:2632858/1‑91 (MQ=255)

                                             tGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTtttttattttta                                               >  1:1127244/1‑91 (MQ=255)

                                                   aCTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGc                                         <  1:3458462/91‑1 (MQ=255)

                                                    cTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCt                                        >  1:1973632/1‑91 (MQ=255)

                                                    cTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCt                                        >  2:2754656/1‑91 (MQ=255)

                                                    cTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCt                                        >  2:1580444/1‑91 (MQ=255)

                                                      cATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTa                                      <  1:861221/91‑1 (MQ=255)

                                                       aTGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTAt                                     <  2:342191/91‑1 (MQ=255)

                                                        tGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTAtt                                    >  1:1925923/1‑90 (MQ=255)

                                                        tGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATc                                    <  1:1233388/91‑1 (MQ=255)

                                                         gAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATTGTTTTTTATTTTTATCGTGCTTATCg                                   <  1:2421715/91‑1 (MQ=255)

                                                         gAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCg                                   <  2:4803870/91‑1 (MQ=255)

                                                         gAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTAATTTTATCGTGCTTATCg                                   <  1:5674296/91‑1 (MQ=255)

                                                          aGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGc                                  <  2:786453/91‑1 (MQ=255)

                                                            cGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTTCTTATCGCTa                                >  2:3250110/1‑91 (MQ=255)

                                                            cGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTa                                <  2:1661761/91‑1 (MQ=255)

                                                             gTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTAt                               <  2:1734821/91‑1 (MQ=255)

                                                             gTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTAt                               <  2:5236420/91‑1 (MQ=255)

                                                              ttACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTAtt                              >  2:4137768/1‑91 (MQ=255)

                                                                aCCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTaa                            >  1:3476750/1‑91 (MQ=255)

                                                                  cAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTaaaa                          <  2:863708/91‑1 (MQ=255)

                                                                   aaCATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAaac                         <  2:928207/91‑1 (MQ=255)

                                                                    aCATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAaaca                        <  2:5196849/91‑1 (MQ=255)

                                                                    aCATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAaaca                        >  1:4463500/1‑91 (MQ=255)

                                                                      aTTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAaacaac                      <  2:2487796/91‑1 (MQ=255)

                                                                       ttCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACt                     <  1:2224259/91‑1 (MQ=255)

                                                                       ttCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACt                     <  1:1717097/91‑1 (MQ=255)

                                                                        tCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTg                    <  2:2189182/91‑1 (MQ=255)

                                                                         cATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGa                   <  2:3923508/91‑1 (MQ=255)

                                                                          ataat‑aAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGAt                  >  2:4222265/1‑91 (MQ=255)

                                                                          ataat‑aAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGAt                  >  1:2080305/1‑91 (MQ=255)

                                                                           taat‑aaAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATa                 >  1:2675990/1‑91 (MQ=255)

                                                                              t‑aaAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATacac              <  2:534622/91‑1 (MQ=255)

                                                                                AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATacaca             >  2:5525982‑M1/1‑91 (MQ=255)

                                                                                 AAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATacacaa            >  1:5034055‑M1/1‑91 (MQ=255)

                                                                                  aaaCGATAGTagtacacgcattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctactattt            <  1:5756117‑M1/91‑82 (MQ=255)

                                                                                  aaaCGATAGTagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctactattt            <  1:290644‑M1/91‑82 (MQ=255)

                                                                                    aCGATAGTagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctactatttaa          <  2:4755359‑M1/91‑84 (MQ=255)

                                                                                    ACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTTCTTATCGCTATTAAAACTACTGATacacaacac         <  2:3058065‑M1/91‑1 (MQ=255)

                                                                                    ACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATacacaacac         >  1:3046722‑M1/1‑91 (MQ=255)

                                                                                    ACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATacacaacac         >  1:4203028‑M1/1‑91 (MQ=255)

                                                                                     cGATAGTagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctactatttaat         <  2:703165‑M1/91‑85 (MQ=255)

                                                                                     CGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATacacaacaca        >  1:3910568‑M1/1‑91 (MQ=255)

                                                                                       aTAGTagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctactatttaatct       >  1:2049878‑M1/1‑5 (MQ=255)

                                                                                       aTAGTagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctactatttaatct       <  1:5202800‑M1/91‑87 (MQ=255)

                                                                                        tagtagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctactatttaatctt      <  1:3303850‑M1/91‑88 (MQ=255)

                                                                                        tAGT‑GTACACGTTAATGAATTCGTGTACTactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctactatttaatctt     <  2:2105319‑M2/91‑63 (MQ=255)

                                                                                         AGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATaaa    <  1:4106684‑M1/91‑1 (MQ=255)

                                                                                           tagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctactatttaatcttaat   >  1:2392771‑M1/1‑1 (MQ=255)

                                                                                           tagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctactatttaatcttaat   >  1:3215674‑M1/1‑1 (MQ=255)

                                                                                           T‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTTCTTATCGCTATTAAAACAACTGATACACAACACATAAACt  <  2:4540163‑M1/91‑1 (MQ=255)

ATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACT  >  USA300TCH1516_ALE/2693289‑2693469

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.