BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2693379	249 (0.830)	14 (0.060)	9/136	NT	6.2%	intergenic (+50/+306)	mtrR/rocA	HTH‑type transcriptional regulator MtrR/1‑pyrroline‑5‑carboxylate dehydrogenase
*	?	USA300TCH1516_ALE	= 2693404	212 (0.840)	14 (0.060)	9/136	NT	6.2%	intergenic (+75/+281)	mtrR/rocA	HTH‑type transcriptional regulator MtrR/1‑pyrroline‑5‑carboxylate dehydrogenase

Only 100 of 122 total aligned reads displayed.

CGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/2693278‑2693379

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaacgatagtAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTAAT  <  USA300TCH1516_ALE/2693404‑2693315

CGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑A                                                                                                       <  1:1292348/91‑1

CGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑A                                                                                                       >  2:84368/1‑91

CGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑A                                                                                                       >  2:4331848/1‑91

CGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑A                                                                                                       >  1:1014409/1‑91

 GAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AA                                                                                                      >  1:5815970/1‑91

  AAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAA                                                                                                     <  2:509338/91‑1

  AAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAA                                                                                                     <  1:867591/91‑1

  AAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAA                                                                                                     <  2:5337980/91‑1

  AAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAA                                                                                                     <  2:3023888/91‑1

  AAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAA                                                                                                     <  2:566230/91‑1

   AGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAA                                                                                                    >  1:2356488/1‑91

   AGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAA                                                                                                    >  1:1753533/1‑91

   AGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAA                                                                                                    >  1:5084075/1‑91

   AGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAA                                                                                                    >  2:3121186/1‑91

   AGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAA                                                                                                    >  1:2572400/1‑91

   AGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAA                                                                                                    <  2:2153572/91‑1

    GATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAA                                                                                                   >  1:5214604/1‑91

    GATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAA                                                                                                   >  1:275832/1‑91

    GATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAA                                                                                                   <  2:5257461/91‑1

    GATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAA                                                                                                   >  1:3805418/1‑91

    GATATTGATAACATTTTCCATAGATTAATCAATATTAAGATGAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAA                                                                                                   >  1:5805720/1‑91

     ATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAAC                                                                                                  >  2:3181662/1‑91

      TATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACG                                                                                                 >  2:5215099/1‑91

      TATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACG                                                                                                 >  2:3910568/1‑91

       ATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGA                                                                                                <  1:1685367/91‑1

       ATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGA                                                                                                <  2:1611689/91‑1

       ATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGA                                                                                                <  1:1852085/91‑1

        TTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGAT                                                                                               >  2:4722706/1‑91

        TTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGAT                                                                                               <  1:4749744/91‑1

        TTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGAT                                                                                               >  2:1533211/1‑91

        TTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAAAGAT                                                                                               >  2:2550072/1‑91

          GATAACATTTTCTATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAG                                                                                             <  2:3741395/91‑1

          GATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAG                                                                                             >  1:2069013/1‑91

          GATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAG                                                                                             <  1:5479594/91‑1

          GATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAG                                                                                             <  2:5617123/91‑1

          GATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAG                                                                                             >  1:984299/1‑91

          GATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAG                                                                                             >  2:523733/1‑91

          GATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAG                                                                                             <  1:3788921/91‑1

          GATAACATTGTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAG                                                                                             <  2:3500497/91‑1

           ATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT                                                                                            >  2:3156866/1‑91

           ATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT                                                                                            <  1:3545714/91‑1

                            TTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTA                                                                           <  2:3484622/91‑1

                                   ATATTAAGATTAAAGAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACTATAGTAGTACACGAATTCAGTAACGTGTA                                                                    <  1:5387265/91‑1

                                    TATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTAC                                                                   <  1:4940241/91‑1

                                     ATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACA                                                                  <  1:4614394/91‑1

                                        AAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTA                                                               <  1:2555863/91‑1

                                        AAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTA                                                               <  2:2105319/91‑1

                                         AGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTA                                                               <  1:5644994/91‑1

                                         AGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTAT                                                              <  1:2420849/91‑1

                                           ATTAAATATTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑GTACACGAATTCATTAACGTGTACACTATCGT                                                           <  2:1165712/91‑1

                                             TAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGT                                                           <  1:2389852/91‑1

                                               AATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTT                                                         <  2:1178490/91‑1

                                                      GATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATG                                                 <  2:2999554/91‑1

                                                                                           AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTAT             >  1:2458702/1‑91

                                                                                           AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTAT             >  2:5805720/1‑91

                                                                                           AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTGTCTCATCTACTAT             >  1:5682855/1‑91

                                                                                           AAAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTCTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTAT             >  2:4183966/1‑91

                                                                                           AAAAACAATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTAT             <  2:2421715/91‑1

                                                                                            AAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATT            <  2:1158339/91‑1

                                                                                            AAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATT            <  2:430565/91‑1

                                                                                            AAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATT            <  2:5728022/91‑1

                                                                                            AAAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATT            <  2:1131903/91‑1

                                                                                             AAACGATAGTAGTACACGCATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTT           <  1:5756117/91‑1

                                                                                             AAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTT           >  2:1819691/1‑91

                                                                                             AAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTT           >  1:1926838/1‑91

                                                                                             AAACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTT           >  1:5215099/1‑91

                                                                                              AACGATAGTAGTGCACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTA          <  2:3754171/91‑1

                                                                                              AACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTA          <  2:1717097/91‑1

                                                                                              AACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTA          <  2:1244449/91‑1

                                                                                               ACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAA         <  2:4755359/91‑1

                                                                                               ACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAA         >  1:3554729/1‑91

                                                                                               ACGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAA         >  2:4086966/1‑91

                                                                                                CGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAAT        <  1:5525982/91‑1

                                                                                                CGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAAT        >  2:3693884/1‑91

                                                                                                CGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAAT        <  1:1884521/91‑1

                                                                                                CGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAAT        <  2:703165/91‑1

                                                                                                CGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAAT        <  2:5206975/91‑1

                                                                                                CGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAAT        <  2:1820823/91‑1

                                                                                                CGATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTAATGAGTTTCTCATCTACTATTTAAT        <  2:4868150/91‑1

                                                                                                 GATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTCTTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATC       >  1:4563429/1‑91

                                                                                                 GATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATC       >  1:5702798/1‑91

                                                                                                 GATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATC       >  1:3235970/1‑91

                                                                                                  ATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCT      <  1:1542229/91‑1

                                                                                                  ATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCT      >  1:2049878/1‑91

                                                                                                  ATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCT      <  2:923994/91‑1

                                                                                                  ATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCT      <  1:5202800/91‑1

                                                                                                  ATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCT      <  1:953995/91‑1

                                                                                                  ATAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCT      >  2:2457177/1‑91

                                                                                                   TAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTT     <  1:3303850/91‑1

                                                                                                   TAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTT     >  1:380839/1‑91

                                                                                                   TAGTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTT     <  2:2753802/91‑1

                                                                                                     GTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTAA   >  2:4437602/1‑91

                                                                                                     GTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTAA   >  2:4325617/1‑91

                                                                                                     GTAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTAA   >  1:4350675/1‑91

                                                                                                      TAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTAAT  >  1:3215674/1‑91

                                                                                                      TAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTAAT  >  1:3135810/1‑91

                                                                                                      TAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTAAT  >  1:267224/1‑91

                                                                                                      TAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTAAT  >  2:5461909/1‑91

                                                                                                      TAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTAAT  >  1:2392771/1‑91

                                                                                                      TAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTAAT  >  2:147437/1‑91

CGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAACGATAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/2693278‑2693379

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaacgatagtAGTACACGAATTCATTAACGTGTACACTATCGTTTTTATTATGAATGTTGGTAACGCTCATGAGTTTCTCATCTACTATTTAATCTTAAT  <  USA300TCH1516_ALE/2693404‑2693315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.