BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2797807 =	284 (0.950)	14 (0.050)	9/142	NT	5.2%	intergenic (+95/+172)	USA300HOU_RS14370/USA300HOU_RS14375	N‑acetylmuramoyl‑L‑alanine amidase domain‑containing protein/N‑carbamoylsarcosine amidase
*	?	USA300TCH1516_ALE	2797838 =	256 (0.970)	14 (0.050)	9/142	NT	5.2%	intergenic (+126/+141)	USA300HOU_RS14370/USA300HOU_RS14375	N‑acetylmuramoyl‑L‑alanine amidase domain‑containing protein/N‑carbamoylsarcosine amidase

Only 100 of 401 total aligned reads displayed.

ACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGCAAA  >  USA300TCH1516_ALE/2797748‑2797928

aCAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTc                                                                                            >  1:2304452/1‑91 (MQ=255)

  aaGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGt                                                                                          <  2:5647782/91‑1 (MQ=255)

   aGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGtt                                                                                         >  2:5011284/1‑91 (MQ=255)

   aGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGtt                                                                                         <  2:3053413/91‑1 (MQ=255)

   aGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGtt                                                                                         >  2:4763067/1‑91 (MQ=255)

    ggAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGttt                                                                                        <  2:3364944/91‑1 (MQ=255)

    ggAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGttt                                                                                        >  1:5341072/1‑91 (MQ=255)

    ggAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGttt                                                                                        >  1:5122030/1‑91 (MQ=255)

    ggAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGttt                                                                                        <  2:1322111/91‑1 (MQ=255)

      aGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTta                                                                                      >  2:1215473/1‑91 (MQ=255)

        ttCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTtata                                                                                    >  1:2262691/1‑91 (MQ=255)

        ttCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTtata                                                                                    >  2:5086093/1‑91 (MQ=255)

         tCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTtatat                                                                                   >  2:721887/1‑91 (MQ=255)

         tCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTtatat                                                                                   >  2:315460/1‑91 (MQ=255)

          cGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTtatata                                                                                  >  2:2140990/1‑91 (MQ=255)

          cGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTtatata                                                                                  >  1:336547/1‑91 (MQ=255)

           ggACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATaa                                                                                 <  1:3715549/91‑1 (MQ=255)

             aCTTAAACATATTTCTGTTCATAAGTCTGATTGCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAat                                                                               >  2:263694/1‑91 (MQ=255)

              cTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAata                                                                              <  1:71523/91‑1 (MQ=255)

              cTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAata                                                                              <  2:4096102/91‑1 (MQ=255)

               ttAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAatat                                                                             <  2:5545721/91‑1 (MQ=255)

                tAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAatata                                                                            <  1:1485251/91‑1 (MQ=255)

                 aaaCATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAatatat                                                                           >  1:3071397/1‑91 (MQ=255)

                   aCATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATAtatta                                                                         >  1:2089112/1‑91 (MQ=255)

                    cATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATAtattat                                                                        <  2:228173/91‑1 (MQ=255)

                      tatTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTAttt                                                                      >  2:2695709/1‑91 (MQ=255)

                       atTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTAtttt                                                                     >  1:484180/1‑91 (MQ=255)

                        tttCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTa                                                                    >  1:327909/1‑91 (MQ=255)

                         ttCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTAt                                                                   <  1:5406397/91‑1 (MQ=255)

                          tCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATg                                                                  >  2:5188365/1‑91 (MQ=255)

                           tttgaacataaaataatatatttatataaaacgacccgaggcgttcgaactgaatgcctcgggtCGTTTTATATAAATATATTATTTTATg                                                                  >  2:1917105‑M2/65‑91 (MQ=255)

                            tGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGtt                                                                <  2:3940231/91‑1 (MQ=255)

                            tGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGtt                                                                <  2:1703955/91‑1 (MQ=255)

                            tGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGtt                                                                <  2:5801958/91‑1 (MQ=255)

                            tGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGtt                                                                <  1:4023865/91‑1 (MQ=255)

                            tGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGtt                                                                <  2:1123777/91‑1 (MQ=255)

                            tGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGtt                                                                <  1:492319/91‑1 (MQ=255)

                            tGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGtt                                                                <  1:5257180/91‑1 (MQ=255)

                              ttCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCa                                                              >  1:2163064/1‑91 (MQ=255)

                                     gTCTGATTTCTTTTTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTc                                                       <  2:3753472/91‑1 (MQ=255)

                                       taatatatttatataaaacgACCCGAGGCGTTC‑GAACTGAATGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCt                                                     <  1:2591201‑M1/71‑1 (MQ=255)

                                        tGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtc                                                    >  1:4129077/1‑91 (MQ=255)

                                         gATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAACTATATTATTTTATGTTCAAATGTTCCtca                                                   >  2:418300/1‑91 (MQ=255)

                                           tttCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcatc                                                 <  1:4605358/91‑1 (MQ=255)

                                            ttCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcatca                                                >  2:3796431/1‑91 (MQ=255)

                                            ttCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcatca                                                >  2:3681434/1‑91 (MQ=255)

                                             tCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTcatcat                                               >  1:547484/1‑91 (MQ=255)

                                              cTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCata                                              >  2:3575229/1‑91 (MQ=255)

                                              cTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCata                                              <  2:618810/91‑1 (MQ=255)

                                              cTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCata                                              >  1:5196640/1‑91 (MQ=255)

                                               ttATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCatat                                             >  1:1649724/1‑91 (MQ=255)

                                                 aTTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAGATGTTCCTCATCATATcc                                           >  1:3949213/1‑91 (MQ=255)

                                                   tCAATTAACCCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGt                                         >  1:4216505/1‑91 (MQ=255)

                                                   tCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGt                                         >  1:2039903/1‑91 (MQ=255)

                                                      aTTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTc                                      <  1:5646425/91‑1 (MQ=255)

                                                       ttAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCa                                     <  2:4949713/91‑1 (MQ=255)

                                                       ttAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCa                                     <  1:2851260/91‑1 (MQ=255)

                                                        tAAACCCGATGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATACTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCaa                                    <  2:5018471/91‑1 (MQ=255)

                                                        tAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCTTCATCATATCCGTTTCaa                                    <  2:1512037/91‑1 (MQ=255)

                                                        tAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCaa                                    <  2:180706/91‑1 (MQ=255)

                                                         aaaCCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAAt                                   <  1:4379264/91‑1 (MQ=255)

                                                          aaCCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAAtt                                  >  2:3497507/1‑91 (MQ=255)

                                                          aaCCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAAtt                                  <  1:315460/91‑1 (MQ=255)

                                                          aaCCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAAtt                                  <  1:2708083/91‑1 (MQ=255)

                                                           ACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTg                                 <  2:2810638‑M1/91‑1 (MQ=255)

                                                              CGAGGCCTTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCa                              <  1:1775863‑M1/91‑1 (MQ=255)

                                                              CGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCa                              <  1:2410878‑M1/91‑1 (MQ=255)

                                                              CGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCa                              <  2:1605632‑M1/91‑1 (MQ=255)

                                                              CGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCa                              <  1:1038857‑M1/91‑1 (MQ=255)

                                                              CGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCa                              <  2:1391953‑M1/91‑1 (MQ=255)

                                                              CGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCa                              >  1:671780‑M1/1‑91 (MQ=255)

                                                               GAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCAt                             <  1:3865258‑M1/91‑1 (MQ=255)

                                                                  GCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCAtctc                          >  2:5318954‑M1/1‑91 (MQ=255)

                                                                   CATTCAGTTC‑GTGCGCGTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGCCCCTCGTCATAGCCGTTTCGATTGCCATCTCa                         >  2:3186222‑M1/1‑91 (MQ=255)

                                                                    atttaGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTcac                        >  1:5801758/5‑91 (MQ=255)

                                                                    aTTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTcac                        <  2:831944/91‑1 (MQ=255)

                                                                    aTTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTcac                        <  2:1017839/91‑1 (MQ=255)

                                                                      tCAGTTC‑GAACGCCTCGGGTCGTTTTATATATATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTcacac                      >  1:5727283/1‑91 (MQ=255)

                                                                       tcgaactgaatgcctcgggtCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTcacac                      >  1:3629855‑M2/21‑91 (MQ=255)

                                                                       cAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTcacaca                     >  1:896331/1‑91 (MQ=255)

                                                                        aGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACAt                    <  2:331198/91‑1 (MQ=255)

                                                                        aGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACAt                    <  2:1874588/91‑1 (MQ=255)

                                                                         gaactgaatgcctcgggtCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACAt                    >  2:4706619‑M2/19‑91 (MQ=255)

                                                                           tC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATGTCACACAtttt                 <  2:5822489/91‑1 (MQ=255)

                                                                            c‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTta                <  1:1451645/91‑1 (MQ=255)

                                                                              gAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTtat               >  2:4380152/1‑91 (MQ=255)

                                                                               aaCGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTtata              <  1:3451626/91‑1 (MQ=255)

                                                                               aaCGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTtata              >  2:4827399/1‑91 (MQ=255)

                                                                                aCGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATaa             >  1:4471592/1‑91 (MQ=255)

                                                                                 cGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATaaa            >  2:5159589/1‑91 (MQ=255)

                                                                                  gcctcgggtCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAat           >  2:2558848‑M2/10‑91 (MQ=255)

                                                                                   cctcgggtCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAata          >  2:4237709‑M2/9‑91 (MQ=255)

                                                                                   cctcgggtCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAata          <  1:4273964‑M2/83‑1 (MQ=255)

                                                                                       gggtCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAg      >  1:1224202‑M2/5‑91 (MQ=255)

                                                                                       gggtCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAg      >  2:299446‑M2/5‑91 (MQ=255)

                                                                                       gggtCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAg      <  2:4580267‑M2/87‑1 (MQ=255)

                                                                                        ggtCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGc     >  1:1920745‑M2/4‑91 (MQ=255)

                                                                                        ggtCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGc     >  2:2395841‑M2/4‑91 (MQ=255)

                                                                                         gtCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGCa    >  1:1161736‑M2/3‑91 (MQ=255)

                                                                                          tCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGCaa   >  1:3507121‑M2/2‑91 (MQ=255)

ACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGCAAA  >  USA300TCH1516_ALE/2797748‑2797928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.