| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2797807 = | 284 (0.950) | 14 (0.050) | 9/142 | NT | 5.2% | intergenic (+95/+172) | USA300HOU_RS14370/USA300HOU_RS14375 | N‑acetylmuramoyl‑L‑alanine amidase domain‑containing protein/N‑carbamoylsarcosine amidase |
| ? | USA300TCH1516_ALE | 2797838 = | 256 (0.970) | intergenic (+126/+141) | USA300HOU_RS14370/USA300HOU_RS14375 | N‑acetylmuramoyl‑L‑alanine amidase domain‑containing protein/N‑carbamoylsarcosine amidase | |||||
TGAGATGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2797905‑2797807‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctcgggtCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGCAA > USA300TCH1516_ALE/2797838‑2797927 TGAGATGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATG < 2:1545529/91‑1TGAGATGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATG < 1:5250783/91‑1TGAGATGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATG < 1:5250846/91‑1TGAGATGGCAATCGAAACGGCTATGACGAGGGGCATTTGAACATAAAATAATATATTTATATAAAACGACCCGACGCGCAC‑GAACTGAATG > 2:3186222/1‑91 GAGATGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGC > 2:5318954/1‑91 AGATGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCC > 1:3796431/1‑91 AGATGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCC > 2:3156708/1‑91 AGATGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCC < 2:1827320/91‑1 GATGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCT < 2:264611/91‑1 GATGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCT > 2:3699976/1‑91 ATGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTC < 2:4751507/91‑1 ATGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTC < 2:4787991/91‑1 ATGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTC < 1:3865258/91‑1 ATGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTC > 1:2791561/1‑91 ATGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTC < 2:411827/91‑1 ATGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTC > 1:3952712/1‑91 ATGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTC > 1:3951974/1‑91 ATGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTC < 1:3493769/91‑1 TGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTCG < 1:4230963/91‑1 TGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTCG < 2:1605632/91‑1 TGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTCG < 1:3917822/91‑1 TGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTCG < 1:1038857/91‑1 TGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTCG < 1:4231677/91‑1 TGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTCG < 2:1391953/91‑1 TGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTCG > 1:671780/1‑91 TGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTCG < 2:3794004/91‑1 TGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTCG < 1:3217487/91‑1 TGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTCG < 1:2410878/91‑1 TGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAAGGCCTCG < 1:1775863/91‑1 GGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTCGG > 1:2070318/1‑91 GGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATACTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTCGG > 1:2070136/1‑91 GGCAATTGAAAAGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTCGG < 2:5850029/91‑1 GCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTCGGG > 2:496806/1‑91 GCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTCGGG < 1:1170060/91‑1 GCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTCGGG < 2:4236463/91‑1 GCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTCGGG < 1:3312616/91‑1 GCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTCGGG < 2:4236123/91‑1 CAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTCGGGT < 2:2810638/91‑1 CAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTCGGGT > 1:1703467/1‑91 CAATTGAAACGGATATGATGAGGAACAGTTGAACATAAAATAAGATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTCGGGT < 2:4481005/91‑1 AGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCATTCAGTTC‑GAACGCCTCGGGTCGTTTTATATAAATATATTA < 1:2591201/91‑1 TTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTCGGGTCGTTTTATATAAATATATTATTTTATG > 2:1917105/1‑91 CCGAGGCGTTC‑GAACTGAATGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATGATATCCGTTTCAATTGCC > 1:5761700/1‑91 GGCGTTC‑GAACTGAATGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCT > 1:5465698/1‑91 GCGTTC‑GAACTGAATGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTC > 2:2825606/1‑91 TTC‑GAACTGAATGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACA > 1:5137646/1‑91 TTC‑GAACTGAATGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACA > 2:1884993/1‑91 TC‑GAACTGAATGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACAC > 2:2641152/1‑91 TC‑GAACTGAATGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACAC > 1:3629855/1‑91 C‑GAACTGAATGCCTCGGGTCGTTTTATATGACTATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAACTGCCATCTCACACA > 1:5363844/1‑91 C‑GAACTGAATGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACA > 2:461717/1‑91 C‑GAACTGAATGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACA > 2:926061/1‑91 GAACTGAATGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACAT > 2:4706633/1‑91 GAACTGAATGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACAT > 2:4706619/1‑91 GCCTCGGGTCTTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAAT < 2:3254579/91‑1 GCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAAT > 2:2558848/1‑91 GCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAAT < 2:4758241/91‑1 CCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATA > 2:4237709/1‑91 CCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATA < 2:4869503/91‑1 CCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATA > 1:3127661/1‑91 CCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATA < 1:3314402/91‑1 CCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATA > 2:842897/1‑91 CCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATA < 1:4273964/91‑1 CCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATA > 1:3751684/1‑91 CTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATAT > 1:4125877/1‑91 CTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATAT < 2:4129077/91‑1 CTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATAT > 2:1365420/1‑91 CTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATAT > 2:3836782/1‑91 CTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATAT > 1:60537/1‑91 CTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATAT > 1:847999/1‑91 CTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATAT > 1:941110/1‑91 CTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATAT > 1:977641/1‑91 CTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCAAATCCGTTTCAATTGCCATCTCACGCATTTTATAAATAT > 1:4863707/1‑91 CGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATGAATATGA > 2:4526459/1‑91 GGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTGCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAG < 2:5842247/91‑1 GGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAG < 2:3510554/91‑1 GGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAG > 2:299446/1‑91 GGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAG > 1:1224202/1‑91 GGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAG < 1:1476174/91‑1 GGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAG < 2:4580267/91‑1 GGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAG > 1:1755709/1‑91 GGGTCGTTTTATATAAATATATTATTTTATGATCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAG > 1:5715935/1‑91 GGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGC > 2:3837581/1‑91 GGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGC > 1:1920745/1‑91 GGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGC > 2:4170311/1‑91 GGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGC < 1:5011284/91‑1 GGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGC > 2:2395841/1‑91 GGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGC > 2:2060671/1‑91 GTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGCA > 2:1339566/1‑91 GTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGCA > 2:501315/1‑91 GTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGCA > 1:1161736/1‑91 TCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGCAA > 1:3507121/1‑91 TCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGCAA < 1:202608/91‑1 TCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGCAA > 1:1257257/1‑91 TGAGATGGCAATTGAAACGGATATGATGAGGAACATTTGAACATAAAATAATATATTTATATAAAACGACCCGAGGCGTTC‑GAACTGAATGCCTCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2797905‑2797807‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctcgggtCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCACACATTTTATAAATATGAGCAA > USA300TCH1516_ALE/2797838‑2797927 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |