| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1903758 = | 240 (0.800) | 11 (0.050) | 7/124 | NT | 6.8% | intergenic (+212/+83) | arsC/atl_2 | Glutaredoxin arsenate reductase/Bifunctional autolysin |
| ? | USA300TCH1516_ALE | 1903801 = | 115 (0.500) | intergenic (+255/+40) | arsC/atl_2 | Glutaredoxin arsenate reductase/Bifunctional autolysin | |||||
Only 100 of 340 total aligned reads displayed.
TACTAATTTCTAAAGAAAAAGTAATTCTTTATCGATGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTAT > USA300TCH1516_ALE/1903668‑1903848 | tACTAATTTCTAAAGAAAAAGTAATTCTTTATCGATGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCa < 1:3453303/91‑1 (MQ=255)tACTAATTTCTAAAGAAAAAGTAATTCTTTATCGATGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCa < 1:2585689/91‑1 (MQ=255) aCTAATTTCTAAAGAAAAAGTAATTCTTTATCGATGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCaa > 2:2094004/1‑91 (MQ=255) aCTAATTTCTAAAGAAAAAGTAATTCTTTATCGATGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCaa > 1:4342377/1‑91 (MQ=255) tcaaatactttgtgtataaagatgacagtaaacatttgaataagtaatttgataagctacgagttgtttttatgactcggacatactaaaa < 2:2481368‑M1/4‑1 (MQ=255) aaatactttgtgtataaagatgacagtaaacatttgaataagtaatttgataagctacgagttgtttttatgactcggacatactAAAAAg < 2:2597645‑M1/6‑1 (MQ=255) aaatactttgtgtataaagatgacagtaaacatttgaataagtaatttgataagctacgagttgtttttatgactcggacatactAAAAAg < 1:3521434‑M1/6‑1 (MQ=255) tttCTAAAGAAAAAGTAATTCTTTATCGATGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCaaaaaca < 2:4915732/91‑3 (MQ=255) ttCTAAAGAAAAAGTAATTCTTTATCGATGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGAc < 2:3080934/91‑1 (MQ=255) atactttgtgtataaagatgacagtaaacatttgaataagtaatttgataagctacgagttgtttttatgactcggacatactAAAAAGAc < 2:2997779‑M1/8‑1 (MQ=255) tactttgtgtataaagatgacagtaaacatttgaataagtaatttgataagctacgagttgtttttatgactcggacatactAAAAAGACg < 1:4432469‑M1/9‑1 (MQ=255) tttgtgtataaagatgacagtaaacatttgaataagtaatttgataagctacgagttgtttttatgactcggacatactAAAAAGACGCtt < 1:1407164‑M1/12‑1 (MQ=255) aaaGAAAAAGTAATTCTTTATCGATGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCtt < 1:446455/91‑1 (MQ=255) ttgtgtataaagatgacagtaaacatttgaataagtaatttgataagctacgagttgtttttatgactcggacatactAAAAAGACGCttt < 1:70828‑M1/13‑1 (MQ=255) aaGAAAAAGTAATTCTTTATCGATGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCttt > 2:4708776/1‑91 (MQ=255) tgtgtataaagatgacagtaaacatttgaataagtaatttgataagctacgagttgtttttatgactcggacatactAAAAAGACGCTTTc > 1:45448‑M1/78‑91 (MQ=255) aGAAAAAGTAATTCTTTATCGATGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTc > 1:3257863/1‑91 (MQ=255) gtgtataaagatgacagtaaacatttgaataagtaatttgataagctacgagttgtttttatgactcggacatactAAAAAGACGCTTTCt < 1:3712673‑M1/15‑1 (MQ=255) gtgtataaagatgacagtaaacatttgaataagtaatttgataagctacgagttgtttttatgactcggacatactAAAAAGACGCTTTCt > 1:5529484‑M1/77‑91 (MQ=255) gtgtataaagatgacagtaaacatttgaataagtaatttgataagctacgagttgtttttatgactcggacatactAAAAAGACGCTTTCt < 1:869719‑M1/15‑1 (MQ=255) gtgtataaagatgacagtaaacatttgaataagtaatttgataagctacgagttgtttttatgactcggacatactAAAAAGACGCTTTCt < 2:1113369‑M1/15‑1 (MQ=255) gtgtataaagatgacagtaaacatttgaataagtaatttgataagctacgagttgtttttatgactcggacatactAAAAAGACGCTTTCt < 1:3610367‑M1/15‑1 (MQ=255) gtgtataaagatgacagtaaacatttgaataagtaatttgataagctacgagttgtttttatgactcggacatactAAAAAGACGCTTTCt < 2:358410‑M1/15‑1 (MQ=255) tgtataaagatgacagtaaacatttgaataagtaatttgataagctacgagttgtttttatgactcggacatactAAAAAGACGCTTTCTa < 1:961497‑M1/16‑1 (MQ=255) aaaaaGTAATTCTTTATCGATGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTa < 1:2867912/91‑1 (MQ=255) gtataaagatgacagtaaacatttgaataagtaatttgataagctacgagttgtttttatgactcggacatactAAAAAGACGCTTTCTAt < 1:3800330‑M1/17‑1 (MQ=255) tataaagatgacagtaaacatttgaataagtaatttgataagctacgagttgtttttatgactcggacatactAAAAAGACGCTTTCTATc > 2:1739666‑M1/74‑91 (MQ=255) aaaGTAATTCTTTATCGATGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATc < 1:194968/91‑1 (MQ=255) aaaGTAATTCTTTATCGATGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTAAATAATACAAAAAGAGGCTTTCTATc < 2:4878967/91‑1 (MQ=38) aGTAATTCTTTATCGATGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGAc > 2:5472748/1‑79 (MQ=255) aGTAATTCTTTATCGATGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCaa < 2:3461149/91‑1 (MQ=255) aGTAATTCTTTATCGATGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCaa < 1:4147876/91‑1 (MQ=255) tAATTCTTTATCGATGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCaaaa < 1:4053606/91‑1 (MQ=255) tAATTCTTTATCGATGTCCTGCCCCACTTACATTGGTGGGATAATCAATCAATGTGTTCTCTCTAATGCAAAAAGACGCTTTCTATCaaaa > 2:4794729/1‑91 (MQ=255) aaTTCTTTATCGATGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAAc > 1:3569689/1‑91 (MQ=255) ttCTTTATCGATGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACaa > 1:1660/1‑91 (MQ=255) atgacagtaaacatttgaataagtaatttgataagctacgagttgtttttatgactcggacatactAAAAAGACGCTTTCTATCAAAACaa > 1:1724986‑M1/67‑91 (MQ=255) cagtaaacatttgaataagtaatttgataagctacgagttgtttttatgactcggacatactAAAAAGACGCTTTCTATCAAAACAAGATa > 1:3000234‑M1/63‑91 (MQ=255) tCGATGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGaa < 2:5571378/91‑1 (MQ=255) tCGATGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGaa > 2:3445632/1‑91 (MQ=255) cGATGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGaaa < 2:4596784/91‑1 (MQ=255) gATGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAg > 1:3908231/1‑91 (MQ=255) aTGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGc < 1:429030/91‑1 (MQ=255) aTGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGAGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGc > 1:5804183/1‑91 (MQ=255) tGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCg < 1:1164763/91‑1 (MQ=255) tGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCg < 1:4775477/91‑1 (MQ=255) gTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACACGATAGAAAGCGt > 2:3790955/1‑91 (MQ=255) gTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGt < 1:5204083/91‑1 (MQ=255) gTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGt > 1:3367268/1‑91 (MQ=255) gTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGt < 1:5144675/91‑1 (MQ=255) gTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGt < 1:5650986/91‑1 (MQ=255) gTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGt < 1:2142883/91‑1 (MQ=255) ccTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCt < 2:1269439/91‑1 (MQ=255) cTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCtt > 2:502735/1‑91 (MQ=255) cTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCtt > 2:44459/1‑91 (MQ=255) cTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCtt > 1:2046296/1‑91 (MQ=255) cTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCtt > 1:3977837/1‑91 (MQ=255) gCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCtttt > 2:5627208/1‑91 (MQ=255) gCCCCACTTGCATTGGTGAGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCtttt < 2:376410/91‑1 (MQ=255) ccccACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCttttt > 2:2239905/1‑91 (MQ=255) cccACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTa > 1:2415683/1‑91 (MQ=255) ccACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAg < 2:349606/91‑1 (MQ=255) ccACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAg < 1:1819119/91‑1 (MQ=255) ccACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAg > 1:4205392/1‑91 (MQ=255) cACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGt < 1:308951/91‑1 (MQ=255) cACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGt > 1:4718648/1‑91 (MQ=255) cTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTAt > 2:822703/1‑91 (MQ=255) ttGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATg < 1:2233231/91‑1 (MQ=255) ttGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATg > 2:3948131/1‑91 (MQ=255) tGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGt > 2:1878200/1‑91 (MQ=255) gCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTc > 1:5430767/1‑91 (MQ=255) gCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTc > 2:5202102/1‑91 (MQ=255) cATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTcc > 2:4203833/1‑91 (MQ=255) aTTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCg > 2:540675/1‑91 (MQ=255) tggtggGATTATCAATCCATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATCTCCGAg > 1:4913588/1‑91 (MQ=255) taagctacgagttgtttttatgactcgtacatactAAAATGACGCTTTCTATCAAAACAATAAAGAAAGCGTCTTTTTAGTATGTCCGAGt > 2:2896316‑M1/36‑91 (MQ=255) ggtggGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGt < 2:3299969/91‑1 (MQ=255) ggtggGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGt < 1:4983385/91‑1 (MQ=255) tggGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCa > 1:2747978/1‑91 (MQ=255) gggATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCAt < 2:4343157/91‑1 (MQ=255) gATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTCTGTCCGAGTCATaa > 2:1193898/1‑91 (MQ=255) aTTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATaaa < 2:130859/91‑1 (MQ=255) aTTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATaaa < 2:778143/91‑1 (MQ=255) tATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATaaaaa < 2:3350703/91‑1 (MQ=255) caatcaatGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAaacaa > 1:3038535/1‑91 (MQ=255) atcaatGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACt > 2:2853440/1‑91 (MQ=255) aatGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGt > 1:1321772/1‑91 (MQ=255) atGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTa > 2:4402263/1‑91 (MQ=255) tgtgTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAg > 2:1507080/1‑91 (MQ=255) gtgtTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGt < 1:157457/53‑1 (MQ=255) gtgtTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGt > 2:157457/1‑53 (MQ=255) gtTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCtt < 1:3690173/91‑1 (MQ=255) ttttCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTa < 1:1294874/91‑1 (MQ=255) ttttCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTa > 2:2703422/1‑91 (MQ=255) actcggacatactAAAAAGACGCTTTCTATCTTGTTTTGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTa < 2:3529338‑M1/78‑1 (MQ=255) tttCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTAt > 2:201431/1‑91 (MQ=255) tctcTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCa < 1:2927148/91‑1 (MQ=255) ctctAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCaa > 2:250826/1‑91 (MQ=255) ctAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAAt > 1:2465114/1‑91 (MQ=255) AAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTAt > 1:3190786‑M1/1‑91 (MQ=255) | TACTAATTTCTAAAGAAAAAGTAATTCTTTATCGATGTCCTGCCCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTAT > USA300TCH1516_ALE/1903668‑1903848 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |