BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1903758 =	240 (0.800)	11 (0.050)	7/124	NT	6.8%	intergenic (+212/+83)	arsC/atl_2	Glutaredoxin arsenate reductase/Bifunctional autolysin
*	?	USA300TCH1516_ALE	1903801 =	115 (0.500)	11 (0.050)	7/124	NT	6.8%	intergenic (+255/+40)	arsC/atl_2	Glutaredoxin arsenate reductase/Bifunctional autolysin

Only 100 of 306 total aligned reads displayed.

CCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCATCTTTATACACAAAGTATTTGAAGTA  >  USA300TCH1516_ALE/1903711‑1903891

 ccACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAg                                                                                           >  1:1288284/1‑91 (MQ=255)

  cACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGt                                                                                          >  1:4718648/1‑91 (MQ=255)

    cTTGCATTGGTGGGATTATCAATGAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTAt                                                                                        <  2:5521194/91‑1 (MQ=255)

    cTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTAt                                                                                        >  2:822703/1‑91 (MQ=255)

    cTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTAt                                                                                        >  1:5465648/1‑91 (MQ=255)

    cTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTAt                                                                                        <  2:3838044/91‑1 (MQ=255)

     ttGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATg                                                                                       >  1:5168979/1‑91 (MQ=255)

      tGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGt                                                                                      >  1:4459622/1‑91 (MQ=255)

        cATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTcc                                                                                    >  1:5781642/1‑91 (MQ=255)

         aTTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCg                                                                                   <  2:4442731/91‑1 (MQ=255)

           tggtggGATTATCAATCCATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATCTCCGAg                                                                                 >  1:4913588/1‑91 (MQ=255)

            taagctacgagttgtttttatgactcgtacatactAAAATGACGCTTTCTATCAAAACAATAAAGAAAGCGTCTTTTTAGTATGTCCGAGt                                                                                >  2:2896316‑M1/36‑91 (MQ=255)

            ggtggGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGt                                                                                <  2:3299969/91‑1 (MQ=255)

            gatggGATTATCAATCAATGTGTTTACTCTAATGAAAAAAGACGCTCTCTATCAAGCCAAGATAGAAAGCATCTTTTTAGTATGTCCGAGt                                                                                >  2:4911753/3‑91 (MQ=255)

                ggATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATa                                                                            >  2:3456459/1‑91 (MQ=255)

                  aTTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATaaa                                                                          <  2:778143/91‑1 (MQ=255)

                  aTTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATaaa                                                                          <  1:166974/91‑1 (MQ=255)

                    tATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATaaaaa                                                                        <  1:3001143/91‑1 (MQ=255)

                     atcaatcaATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAaac                                                                       <  2:516990/91‑1 (MQ=255)

                     atcaatcaATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAaac                                                                       <  2:1980327/91‑1 (MQ=255)

                     atcaatcaATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAaac                                                                       <  1:2227175/91‑1 (MQ=255)

                      tcaatcaaTGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAaaca                                                                      >  1:3072675/1‑91 (MQ=255)

                      tcaatcaaTGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAaaca                                                                      >  1:246372/1‑91 (MQ=255)

                        aatcaatGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAaacaac                                                                    >  2:142202/1‑91 (MQ=255)

                           caatGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCg                                                                 >  1:426598/1‑91 (MQ=255)

                           caatGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCg                                                                 >  1:2325811/1‑91 (MQ=255)

                           aaatGTGTTTTCTCTAATGCAAAAAGACGCTTACTATCAAAACAAGAGAGAAAGCGTCTTTTGAGTATGTCCGAGTCATAAAAACAACTCg                                                                 <  2:5610540/90‑1 (MQ=255)

                            aatGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGt                                                                >  1:1321772/1‑91 (MQ=255)

                            aatGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGt                                                                >  1:3276681/1‑91 (MQ=255)

                              tgtgTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAg                                                              >  2:4071025/1‑91 (MQ=255)

                               gtgtTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGc                                                             <  1:2843637/91‑1 (MQ=255)

                                 gtTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCtt                                                           >  2:2459938/1‑91 (MQ=255)

                                  ttttCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTa                                                          >  2:2703422/1‑91 (MQ=255)

                                  ttttCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTa                                                          >  1:1604017/1‑91 (MQ=255)

                                  ttttCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTa                                                          >  1:5577993/1‑91 (MQ=255)

                                      ctctAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCaa                                                      >  2:250826/1‑91 (MQ=255)

                                       tctAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCaaa                                                     >  2:1710835/1‑91 (MQ=255)

                                       gacatactAAAAAGACGCTTTCTATCTTGTTTTGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCaaa                                                     >  1:1732963‑M1/9‑91 (MQ=255)

                                         tAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAAtt                                                   <  1:5022627/91‑1 (MQ=255)

                                          aaTGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTa                                                  >  1:3909590/1‑91 (MQ=255)

                                           aTGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTAc                                                 >  2:2769197/1‑91 (MQ=255)

                                           aTGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTAc                                                 >  1:4426028/1‑91 (MQ=255)

                                           aTGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTAc                                                 <  1:330753/91‑1 (MQ=255)

                                           aTGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTAc                                                 >  1:2624317/1‑91 (MQ=255)

                                           aTGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACGCGTAGCTTATCAAATTAc                                                 >  2:2916768/1‑91 (MQ=255)

                                            tGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACt                                                >  1:2950083/1‑91 (MQ=255)

                                             gCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACtt                                               <  2:115415/91‑1 (MQ=255)

                                                AAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTAtt                                            <  1:195310‑M1/91‑1 (MQ=255)

                                                  AAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCa                                          >  1:866542‑M1/1‑91 (MQ=255)

                                                   AGACGCTTTCTATCGAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACGACTCGTAGCTTAGCAAATTACTTATTCaa                                         >  1:5384576‑M1/1‑91 (MQ=255)

                                                     ACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAAt                                       >  2:4685532‑M1/1‑91 (MQ=255)

                                                     ACGCTTTCTATCAAAACAAGATAGAAAGCGTCTATAAAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAAt                                       <  2:4539052‑M1/91‑1 (MQ=255)

                                                      CGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATg                                      >  1:2519820‑M1/1‑91 (MQ=255)

                                                      CGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATg                                      >  1:3592824‑M1/1‑91 (MQ=255)

                                                      CGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATg                                      <  2:2866544‑M1/91‑1 (MQ=255)

                                                      CGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATg                                      <  2:618638‑M1/91‑1 (MQ=255)

                                                      CGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATg                                      <  1:3477363‑M1/91‑1 (MQ=255)

                                                       GCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGt                                     >  1:1006702‑M1/1‑91 (MQ=255)

                                                       GCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGt                                     >  1:1412208‑M1/1‑91 (MQ=255)

                                                       GCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGt                                     <  2:5746582‑M1/91‑1 (MQ=255)

                                                       GCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGt                                     <  1:5722339‑M1/91‑1 (MQ=255)

                                                       GCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGt                                     <  1:983390‑M1/91‑1 (MQ=255)

                                                       GCTTTCTATCAAAACAAGATAGAAAGCGTCTGTTTAGTATGTCCGAGTCATAAAAACAACTCTTAGCTTATCAAATTACTTATTCAAATGt                                     <  2:1187489‑M1/91‑1 (MQ=255)

                                                        CTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGtt                                    >  2:400717‑M1/1‑91 (MQ=255)

                                                        CTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGtt                                    <  2:3931119‑M1/91‑1 (MQ=255)

                                                        CTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGtt                                    >  2:3660501‑M1/1‑91 (MQ=255)

                                                        CTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATAAAATTACTTATTCAAATGtt                                    <  2:4322826‑M1/91‑1 (MQ=255)

                                                          TTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTa                                  >  2:2237845‑M1/1‑91 (MQ=255)

                                                           TCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTAc                                 >  1:617148‑M1/1‑91 (MQ=255)

                                                            CTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACt                                >  1:1815524‑M1/1‑91 (MQ=255)

                                                              ATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGt                              >  1:269765‑M1/1‑91 (MQ=255)

                                                               TCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTc                             >  1:3687530‑M1/1‑91 (MQ=255)

                                                               TCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTc                             >  1:4314482‑M1/1‑91 (MQ=255)

                                                                cttgttttgatagaaagcgtctttttAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCa                            >  1:3512068‑M2/27‑91 (MQ=255)

                                                                CAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCa                            >  1:1228701‑M1/1‑91 (MQ=255)

                                                                 ttgttttgatagaaagcgtctttttAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCAt                           >  2:3382866‑M2/26‑91 (MQ=255)

                                                                 ttgttttgatagaaagcgtctttttAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCAt                           >  2:4368033‑M2/26‑91 (MQ=255)

                                                                  aaaCAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCATc                          <  2:1921795/91‑1 (MQ=255)

                                                                  aaaCAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCATc                          >  2:5321454/1‑91 (MQ=255)

                                                                   aaCAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCATCt                         >  1:313016/1‑91 (MQ=255)

                                                                   aaCAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCATCt                         >  1:2413407/1‑91 (MQ=255)

                                                                        gatagaaagcgtctttttAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCATCTTtata                    >  1:2195526‑M2/19‑91 (MQ=255)

                                                                         atagaaagcgtctttttAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCATCTTTATac                   <  1:3800330‑M2/74‑1 (MQ=255)

                                                                          tagaaagcgtctttttAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCATCTTTATaca                  <  1:961497‑M2/75‑1 (MQ=255)

                                                                          tagaaagcgtctttttAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCATCTTTATaca                  <  2:1288284‑M2/75‑1 (MQ=255)

                                                                          tagaaagcgtctttttAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCATCTTTATaca                  >  2:3554558‑M2/17‑91 (MQ=255)

                                                                           agaaagcgtctttttAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCATCTTTATacac                 <  1:3712673‑M2/76‑1 (MQ=255)

                                                                           agaaagcgtctttttAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCATCTTTATacac                 <  2:358410‑M2/76‑1 (MQ=255)

                                                                             aaagcgtctttttAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCATCTTTATACACaa               <  2:4842752‑M2/78‑1 (MQ=255)

                                                                             aaagcgtctttttAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCATCTTTATACACaa               <  2:3512068‑M2/78‑1 (MQ=255)

                                                                                  gtctttttAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCATCTTTATACACAAAGTAt          <  2:2997779‑M2/83‑1 (MQ=255)

                                                                                  gtctttttAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCATCTTTATACACAAAGTAt          <  2:5413644‑M2/83‑1 (MQ=255)

                                                                                    ctttttAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCATCTTTATACACAAAGTAttt        <  2:2597645‑M2/85‑1 (MQ=255)

                                                                                    ctttttAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCATCTTTATACACAAAGTAttt        <  2:2046296‑M2/85‑1 (MQ=255)

                                                                                    ctttttAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCATCTTTATACACAAAGTAttt        >  1:1840599‑M2/7‑91 (MQ=255)

                                                                                      ttttAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCATCTTTATACACAAAGTATTTGa      >  2:1865359‑M2/5‑91 (MQ=255)

                                                                                      ttttAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCATCTTTATACACAAAGTATTTGa      >  1:3047771‑M2/5‑91 (MQ=255)

                                                                                        ttAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCATCTTTATACACAAAGTATTTGAAg    <  1:4106174‑M2/89‑1 (MQ=255)

                                                                                         tAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCATCTTTATACACAAAGTATTTGAAGt   >  1:1343874‑M2/2‑91 (MQ=255)

                                                                                          aGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCATCTTTATACACAAAGTATTTGAAGTa  >  2:3137600/1‑91 (MQ=255)

CCCACTTGCATTGGTGGGATTATCAATCAATGTGTTTTCTCTAATGCAAAAAGACGCTTTCTATCAAAACAAGATAGAAAGCGTCTTTTTAGTATGTCCGAGTCATAAAAACAACTCGTAGCTTATCAAATTACTTATTCAAATGTTTACTGTCATCTTTATACACAAAGTATTTGAAGTA  >  USA300TCH1516_ALE/1903711‑1903891

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.