BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 514987	200 (0.670)	12 (0.050)	6/142	NT	6.3%	intergenic (+3055/‑3708)	recR/speA_2	Recombination protein RecR/Arginine decarboxylase
*	?	USA300TCH1516_ALE	= 514989	182 (0.690)	12 (0.050)	6/142	NT	6.3%	intergenic (+3057/‑3706)	recR/speA_2	Recombination protein RecR/Arginine decarboxylase

Only 100 of 263 total aligned reads displayed.

TGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAA  >  USA300TCH1516_ALE/514899‑515079

tGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAgctt                                                                                            <  1:1076739/91‑1 (MQ=34)

tGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAgctt                                                                                            >  1:1531674/1‑91 (MQ=34)

tGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAgctt                                                                                            >  2:2871917/1‑91 (MQ=34)

 gAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTg                                                                                           >  1:113185‑M2/1‑90 (MQ=255)

 gAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTg                                                                                           <  1:1616441‑M2/91‑2 (MQ=255)

 gAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTg                                                                                           >  2:1177833‑M2/1‑90 (MQ=255)

  aaaCATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTgc                                                                                          >  1:1159091‑M2/1‑89 (MQ=255)

   aaCATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTgct                                                                                         <  1:2251451‑M2/91‑4 (MQ=255)

     cATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTgcttg                                                                                       >  1:5045363‑M2/1‑86 (MQ=255)

      aTCTTAGTACGTGGAGGAAGAGGAAGAAAATTAGTTTCACTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTgcttgt                                                                                      >  2:3436472‑M2/1‑85 (MQ=255)

      aTCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTgcttgt                                                                                      <  2:972434‑M2/91‑7 (MQ=255)

      aTCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTgcttgt                                                                                      >  2:5180549‑M2/1‑85 (MQ=255)

      aTCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGACGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTgcttgt                                                                                      >  2:5412065‑M2/1‑85 (MQ=255)

       tCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTgcttgtt                                                                                     >  1:129912‑M2/1‑84 (MQ=255)

        cTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTgcttgttg                                                                                    <  2:2831865‑M2/91‑9 (MQ=255)

        cTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTgcttgttg                                                                                    <  2:1680682‑M2/91‑9 (MQ=255)

         ttAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTgcttgttgg                                                                                   <  1:5677474‑M2/91‑10 (MQ=255)

         ttAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCAAgcttgttgg                                                                                   <  1:3024430‑M2/91‑10 (MQ=255)

          tAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTggg                                                                                  >  1:3801129/1‑91 (MQ=34)

           aGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTgggg                                                                                 >  1:2240113/1‑91 (MQ=34)

           aGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTgggg                                                                                 >  2:1370257/1‑91 (MQ=33)

           aGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTgggg                                                                                 >  1:467755/1‑91 (MQ=34)

           aGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCCTGCTgggg                                                                                 >  2:82682/1‑91 (MQ=16)

            gTACCCGGAGGAAGAGAAAGAAAATTCGATGCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGt                                                                                <  1:4513700/91‑1 (MQ=21)

             tACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGtt                                                                               >  1:305510/1‑91 (MQ=34)

             tACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGtt                                                                               >  2:4510501/1‑91 (MQ=33)

               cccGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGt                                                                             >  2:2395122/1‑91 (MQ=34)

               cccGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGt                                                                             >  2:5242509/1‑91 (MQ=33)

                ccGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTa                                                                            >  2:4853953/1‑91 (MQ=33)

                 cGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAg                                                                           >  1:170292/1‑91 (MQ=34)

                  ggaggaAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAgg                                                                          <  1:4396826/91‑1 (MQ=34)

                    aggaAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGac                                                                        >  2:3984135/1‑91 (MQ=34)

                     ggaAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGaca                                                                       <  1:3984135/91‑1 (MQ=34)

                       aaGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACAct                                                                     <  1:2411594/91‑1 (MQ=34)

                        agagAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACActc                                                                    >  1:4263383/1‑91 (MQ=34)

                        agagAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACActc                                                                    >  1:3888519/1‑91 (MQ=34)

                        agagAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACActc                                                                    <  2:1846719/91‑1 (MQ=34)

                        agagAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACActc                                                                    <  1:2995513/91‑1 (MQ=34)

                        agagAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACActc                                                                    >  2:430078/1‑91 (MQ=34)

                        agagAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACActc                                                                    <  1:5142801/91‑1 (MQ=34)

                        agagAAAGAAAATTCGATTCCCTTAGTAGCGACGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACActc                                                                    >  2:3010504/1‑91 (MQ=21)

                         gagaAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACActct                                                                   >  2:3406389/1‑91 (MQ=34)

                         gagaAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACActct                                                                   >  2:3649292/1‑91 (MQ=34)

                         gagaAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACActct                                                                   >  2:4268926/1‑91 (MQ=34)

                         gagaAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACActct                                                                   <  1:3322274/91‑1 (MQ=34)

                         gagaAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACActct                                                                   >  1:4233905/1‑91 (MQ=34)

                         gagaAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCCTGCTTGTCGGGGTTGTAGGTCAccct                                                                   >  1:4889681/1‑91 (MQ=11)

                          agaaagaaAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCta                                                                  >  1:2581784/1‑91 (MQ=34)

                           gaaagaaaATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCtat                                                                 <  1:5502011/91‑1 (MQ=34)

                            aaagaaaATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCtata                                                                <  1:1879855/91‑1 (MQ=34)

                            aaagaaaATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCtata                                                                <  2:1590484/91‑1 (MQ=33)

                            aaagaaaATTCGATTCCCTTAGTAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCAAgcttgttggtttgggctcttcccgtttc                                                                >  1:629099‑M2/1‑63 (MQ=255)

                             aagaaaATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATAc                                                               >  1:4344062/1‑91 (MQ=33)

                               gaaaATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACgg                                                             <  1:355302/91‑1 (MQ=34)

                               gaaaATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACgg                                                             <  1:247264/91‑1 (MQ=34)

                                aaaaTTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGa                                                            >  1:2846728/1‑91 (MQ=34)

                                   aTTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGtt                                                         >  2:4108539/1‑91 (MQ=34)

                                     tCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCACCAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTAc                                                       <  2:5698765/91‑1 (MQ=18)

                                     tCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTAc                                                       <  2:2220763/91‑1 (MQ=34)

                                     tCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTAc                                                       >  2:734367/1‑91 (MQ=34)

                                     tCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTAc                                                       <  1:766013/91‑1 (MQ=33)

                                       gATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACaa                                                     <  2:4593959/91‑1 (MQ=34)

                                       gATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACaa                                                     >  1:3653589/1‑91 (MQ=34)

                                        aTTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACGAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACaaa                                                    >  1:5805219/1‑91 (MQ=21)

                                         ttCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAg                                                   <  2:5651489/91‑1 (MQ=33)

                                         ttCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAg                                                   <  2:1987936/91‑1 (MQ=33)

                                         ttCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAg                                                   <  1:3409588/91‑1 (MQ=34)

                                          tCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAgg                                                  <  1:1397301/91‑1 (MQ=34)

                                          tCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAgg                                                  <  1:524159/91‑1 (MQ=33)

                                             cTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGgacg                                               >  1:411065/1‑91 (MQ=34)

                                             cTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGgacg                                               <  2:3566977/91‑1 (MQ=33)

                                             cTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGgacg                                               <  2:377128/91‑1 (MQ=34)

                                               tagtagCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGgacgac                                             <  1:2057831/91‑1 (MQ=34)

                                                 gtagCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACAt                                           >  2:4755330/1‑91 (MQ=34)

                                                  tagCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACAtt                                          <  1:1810165/91‑1 (MQ=34)

                                                    gcggcgAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAg                                        <  1:879466/91‑1 (MQ=34)

                                                     cggcgAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACAtt                                          <  2:1806451/88‑1 (MQ=35)

                                                     cggcgAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACAtt                                          >  1:1806242/1‑88 (MQ=35)

                                                     cggcgAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGa                                       >  1:1183119/1‑91 (MQ=34)

                                                     cggcgAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGa                                       >  2:3059450/1‑91 (MQ=33)

                                                     cggcgAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGa                                       <  2:4241073/91‑1 (MQ=33)

                                                      ggcgAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGAc                                      <  1:5747997/91‑1 (MQ=34)

                                                          agcgaAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAat                                  <  2:2539395/91‑1 (MQ=33)

                                                           gcgaAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAatc                                 >  1:5325298/1‑91 (MQ=34)

                                                           gcgaAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAatc                                 <  2:5016049/91‑1 (MQ=33)

                                                            cgaAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAatca                                >  2:3332951/1‑91 (MQ=34)

                                                             gaAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAatcat                               >  1:2830755/1‑91 (MQ=34)

                                                             gaAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAatcat                               >  2:3994888/1‑91 (MQ=34)

                                                              aaaTGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAatcatc                              <  2:4971800/91‑1 (MQ=34)

                                                                aTGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTg                            <  1:475270/91‑1 (MQ=32)

                                                                aTGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTg                            <  1:474411/91‑1 (MQ=32)

                                                                 tGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCttt                           <  2:3257884/91‑3 (MQ=14)

                                                                                    caaGCTTgcttgttggtttgggctcttcccgtttcgctcgccgctactaagggaatcgaattttctttctcttcctccgggtactaagatg        <  2:1288992‑M2/91‑85 (MQ=255)

                                                                                    caaGCTTgcttgttggtttgggctcttcccatttcgctcgccgctactaagggaatcgaattttctttctcttcctccgggtactaagatg        <  1:4593938‑M2/91‑85 (MQ=255)

                                                                                     aaGCTTgcttgttggtttgggctcttcccgtttcgctcgccgctactaagggaatcgaattttctttctcttcctccgggtactaagatgt       <  2:3093711‑M2/91‑86 (MQ=255)

                                                                                     aaGCTTgcttgttggtttgggctcttcccatttcgctcgccgctactaagggaatcgaattttctttctcttcctccgggtactaagatgt       <  1:561079‑M2/91‑86 (MQ=255)

                                                                                      aGCTTgcttgttggtttgggctcttcccgtttcgctcgccgctactaagggaatcgaattttctttctcttcctccgggtactaagctgtt      <  2:2459966‑M2/91‑87 (MQ=255)

                                                                                       gcttgcttgttggtttgggctcttcccgtttcgctcgccgctactaagggaatcgaattttctttctcttcctccgggtactaagatgttt     <  2:583234‑M2/91‑88 (MQ=255)

                                                                                       gcttgcttgttggtttgggctcttcccgtttcgctcgccgctactaagggaatcgaattttctttctcttcctccgggtactaagatgttt     <  1:2332998‑M2/91‑88 (MQ=255)

                                                                                          tgcttgttggtttgggctcttcccatttcgctcgccgctactaagggaatcgaattttctttctcttcctccgggtactaagatgtttcag  <  2:2422011‑M2/91‑91 (MQ=255)

TGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAATAA  >  USA300TCH1516_ALE/514899‑515079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.