| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 514987 | 200 (0.670) | 12 (0.050) | 6/142 | NT | 6.3% | intergenic (+3055/‑3708) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 514989 | 182 (0.690) | intergenic (+3057/‑3706) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
Only 100 of 332 total aligned reads displayed.
ACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAAT > USA300TCH1516_ALE/514897‑515077 | aCTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCCAACCAACAAGC > 2:10448‑M1/1‑91 (MQ=255)aCTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGC > 1:4616473‑M1/1‑91 (MQ=255)aCTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGC > 2:5305639‑M1/1‑91 (MQ=255) cTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCa < 2:2422011‑M1/91‑2 (MQ=255) tGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAgctt < 1:1076739/91‑1 (MQ=34) gAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTg > 2:1877165‑M2/1‑90 (MQ=255) gAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTg > 1:5559380‑M2/1‑90 (MQ=255) aaaCATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTgc > 2:4970114‑M2/1‑89 (MQ=255) aaCATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTgct < 1:2251451‑M2/91‑4 (MQ=255) aaCATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTgct < 1:4004494‑M2/91‑4 (MQ=255) aaCAGCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCaagct < 2:2459966‑M1/91‑6 (MQ=255) aCATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTgctt > 2:4063430‑M2/1‑87 (MQ=255) aCATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCaagctt < 2:3093711‑M1/91‑7 (MQ=255) cATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCaagcttg < 1:4154318‑M1/91‑8 (MQ=255) cATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCaagcttg < 2:1288992‑M1/91‑8 (MQ=255) aTCTTAGTACGTGGAGGAAGAGGAAGAAAATTAGTTTCACTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTgcttgt > 2:3436472‑M2/1‑85 (MQ=255) aTCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTgcttgt > 2:5180549‑M2/1‑85 (MQ=255) aTCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTgcttgt > 1:3436069‑M2/1‑85 (MQ=255) cTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTgcttgttg < 2:1680682‑M2/91‑9 (MQ=255) ttAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCAAgcttgttgg < 1:3024430‑M2/91‑10 (MQ=255) ttAGTACCCGGAGGAAGAAAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCaagcttgttgg < 2:4001153‑M1/91‑12 (MQ=255) tAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTggg > 1:3801129/1‑91 (MQ=34) aGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTgggg > 2:1810165/1‑91 (MQ=34) aGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTgggg > 2:1370257/1‑91 (MQ=33) aGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTgggg > 1:467755/1‑91 (MQ=34) aGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTgggg > 1:2240113/1‑91 (MQ=34) aGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCCTGCTgggg > 2:82682/1‑91 (MQ=16) tACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGtt > 1:305510/1‑91 (MQ=34) cccGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGt < 1:5147451/91‑1 (MQ=34) cccGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGt > 2:2395122/1‑91 (MQ=34) cccGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGt > 1:160913/1‑91 (MQ=34) cGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAg < 1:4354282/91‑1 (MQ=34) ggaggaAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAgg < 1:5058420/91‑1 (MQ=34) aaGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAGCAAGCTTGCTTGTTGGGGTTGTAGGACAct < 1:2339507/91‑1 (MQ=18) aaGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACAct < 1:2411594/91‑1 (MQ=34) agagAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACActc > 1:3888519/1‑91 (MQ=34) agagAAAGAAAATTCGATTCCCTTAGTAGCGACGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACActc > 2:3010504/1‑91 (MQ=21) gagaAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACActct > 2:3349682/1‑91 (MQ=33) gagaAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACActct > 2:3406389/1‑91 (MQ=34) gagaAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACActct < 1:3322274/91‑1 (MQ=34) gagaAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACActct > 2:4268926/1‑91 (MQ=34) agaaagaaAATTCGATACCCTTAGTAGCGGCGGGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGAGGTTGTAGGACACTCta < 1:2494741/91‑1 (MQ=255) aaagaaaATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCACACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCtata < 2:4330308/91‑1 (MQ=18) aaagaaaATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCtata < 1:1879034/91‑1 (MQ=34) aaagaaaATTCGATTCCCTTAGTAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCAAgcttgttggtttgggctcttcccgtttc > 1:629099‑M2/1‑63 (MQ=255) aagaaaATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATAc < 1:1808533/91‑1 (MQ=33) agaaaATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACg > 1:5023296/1‑91 (MQ=34) agaaaATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCAAgcttgttggtttgggctcttcccatttcgc > 1:4564437‑M2/1‑61 (MQ=255) gaaaATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACgg < 1:355302/91‑1 (MQ=34) aaaaTTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGa < 2:2713042/91‑1 (MQ=34) aaTTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGt < 1:1152487/91‑1 (MQ=33) aaTTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGt < 1:4855047/91‑1 (MQ=34) aaTTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGt > 1:2781677/1‑91 (MQ=34) aTTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGtt < 2:2146971/91‑1 (MQ=33) tCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTAc > 2:734367/1‑91 (MQ=34) tCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTAc > 2:3567540/1‑91 (MQ=34) tCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTAc > 1:5324288/1‑91 (MQ=34) tCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTAc < 1:766013/91‑1 (MQ=33) gATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACaa < 2:4593959/91‑1 (MQ=34) gATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACaa > 1:3653589/1‑91 (MQ=34) ttCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAg < 2:5651489/91‑1 (MQ=33) tCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAgg < 1:2930165/91‑1 (MQ=34) cTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGgacg < 1:2841871/91‑1 (MQ=34) cTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGgacg < 2:377128/91‑1 (MQ=34) ttAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGgacga < 1:4504216/91‑1 (MQ=33) tagtagCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGgacgac < 1:2057650/91‑1 (MQ=33) tagtagCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGgacgac < 1:1632216/91‑1 (MQ=34) gtagCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACAt > 2:4755330/1‑91 (MQ=34) cggcgCGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTAGGGTTGTAGGACACTCTATCCGGAGTTACGAAGGACGACATTAGa > 2:5742866/1‑91 (MQ=11) cggcgAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGa < 2:4241798/91‑1 (MQ=33) cggcgAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGa > 1:116483/1‑91 (MQ=34) cggcgAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGa > 2:3059450/1‑91 (MQ=33) ggcgAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGAc < 1:5747998/91‑1 (MQ=34) ggcgAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGAc < 2:2505834/91‑1 (MQ=33) ggcgAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGAc < 2:1591745/91‑1 (MQ=33) agcgaAATGGGAAGAGCCCAAACCAACAAGCAAgcttgttggtttgggctcttcccatttcgctcgccgctactaagggaatcgaattttc < 1:5470778‑M2/91‑59 (MQ=255) gcgaAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAatc < 2:5016049/91‑1 (MQ=33) cgaAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAatca < 2:4557321/91‑1 (MQ=34) gaAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAatcat < 1:5807505/91‑1 (MQ=34) gaAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAatcat > 2:3994748/1‑91 (MQ=34) aaTGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCt > 2:3681194/1‑91 (MQ=33) aTGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTg < 1:474411/91‑1 (MQ=32) tGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCttt < 2:3257884/91‑3 (MQ=14) tGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTgg < 2:2862003/91‑1 (MQ=31) ccAACAAGCaagcttgttggtttgggctcttcccatttcgctcgccgctactaagggaatcgaattttctttctcttcctccgggtactaa < 1:2314128‑M1/91‑83 (MQ=255) ccAACAAGCaagcttgttggtttgggctcttcccatttcgctcgccgctactaagggaatcgaattttctttctcttcctccgggtactaa < 1:5677474‑M1/91‑83 (MQ=255) aacaaGCaagcttgttggtttgggctcttcccatttcgctcgccgctactaagggaatcgaattttctttctcttcctccgggtactaaga > 1:129912‑M1/1‑7 (MQ=255) aacaaGCaagcttgttggtttgggctcttcccatttcgctcgccgctactaagggaatcgaattttctttctcttcctccgggtactaaga > 1:4282634‑M1/1‑7 (MQ=255) aacaaGCaagcttgttggtttgggctcttcccatttcgctcgccgctactaagggaatcgaattttctttctcttcctccgggtactaaga > 1:1365105‑M1/1‑7 (MQ=255) acaaGCaagcttgttggtttgggctcttcccatttcgctcgtcgctactaagggaatcgaattttctttctcttcctccgggtactaagat > 2:5412065‑M1/1‑6 (MQ=255) acaaGCaagcttgttggtttgggctcttcccatttcgctcgccgctactaagggaatcgaattttctttctgttcctccgggtactaagat > 1:1493190‑M1/1‑6 (MQ=255) acaaGCaagcttgttggtttgggctcttcccatttcgctcgccgctactaagggaatcgaattttctttctcttcctccgggtactaagat < 2:972434‑M1/91‑86 (MQ=255) aagcaagcttgttggtttgggctcttcccatttcgctcgccgctactaagggaatcgaattttctttctcttcctccgggtactaagatgt > 1:5620784‑M1/1‑4 (MQ=255) agcaagcttgttggtttgggctcttcccatttcgctcgccgctactaagggaatcgaattttctttctcttcctccgggtactaagatgtt < 1:4003787‑M1/91‑89 (MQ=255) gcttgcttgttggtttgggctcttcccgtttcgctcgccgctactaagggaatcgaattttctttctcttcctccgggtactaagatgttt < 2:583234‑M2/91‑88 (MQ=255) gcaagcttgttggtttgggctcttcccatttcgctcgccgctactaagggaatcgaattttctttctcttcctccgggtactaagatgttt > 2:4863923‑M1/1‑2 (MQ=255) caagcttgttggtttgggctcttcccatttcgctcgccgctactaagggaatcgaattttctttctcttcctccgggtactaagatgtttc > 2:1177833‑M1/1‑1 (MQ=255) caagcttgttggtttgggctcttcccatttcgctcgccgctactaagggaatcgaattttctttctcttcctccgggtactaagatgtttc > 1:4234487‑M1/1‑1 (MQ=255) caagcttgttggtttgggctcttcccatttcgctcgccgctactaagggaatcgaattttctttctcttcctccgggtactaagatgtttc > 1:1768839‑M1/1‑1 (MQ=255) caagcttgttggtttgggctcttcccatttcgctcgccgctactaagggaatcgaattttctttctcttcctccgggtactaagatgtttc > 1:113185‑M1/1‑1 (MQ=255) | ACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGGGTTGTAGGACACTCTATACGGAGTTACAAAGGACGACATTAGACGAATCATCTGGAAAGATGAATCAAAGAAGGTAAT > USA300TCH1516_ALE/514897‑515077 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |