| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 514987 | 200 (0.670) | 12 (0.050) | 6/142 | NT | 6.3% | intergenic (+3055/‑3708) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 514989 | 182 (0.690) | intergenic (+3057/‑3706) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
Only 100 of 104 total aligned reads displayed.
CCCGGAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/514889‑514987‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaacaagcAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGATGTTTC < USA300TCH1516_ALE/514989‑514900 CCCGGAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAAC > 1:5235550/1‑91 CCGGAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACC > 1:102329/1‑91 CCGGAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACC < 1:3074214/91‑1 CCGGAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACC < 1:2258953/91‑1 CCGGAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACC > 1:839719/1‑91 CCGGAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACC < 2:1276448/91‑1 CCGGAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACC < 2:2101022/91‑1 CCGGAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACC > 2:932325/1‑91 CCGGAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACC > 1:102189/1‑91 CCGGAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACC < 2:3189205/91‑1 CGGAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCA < 2:5687010/91‑1 CGGAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCA < 2:2855102/91‑1 CGGAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCA < 2:488519/91‑1 CGGAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCA < 1:3115894/91‑1 GGAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAA < 2:3796134/91‑1 GGAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAA < 1:3940390/91‑1 GGAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAA > 1:4319413/1‑91 GGAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAA < 2:5187668/91‑1 GGAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAA < 1:470265/91‑1 GGAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAA < 2:5163282/91‑1 GAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAAC > 1:2434524/1‑91 AGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTCGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACA < 2:4920346/91‑1 AGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACA < 1:276586/91‑1 AGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACA < 2:5481646/91‑1 AGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACA < 2:2562808/91‑1 GAACTGAAACATCTTAGTACCCGGAGGAAGTGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCAAAACCAACAA > 2:4650440/1‑91 GAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAA > 1:4366464/1‑91 GAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAA > 1:4191142/1‑91 GAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAA > 1:3887217/1‑91 GAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAA > 1:1108011/1‑91 GAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAA > 1:1813695/1‑91 GAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGAATCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAA > 2:2118871/1‑91 ACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCCAACCAACAAGC > 2:10448/1‑91 ACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGC < 1:1856470/91‑1 ACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGC < 2:4263801/91‑1 ACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGC > 2:814726/1‑91 ACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGC < 2:679059/91‑1 ACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGC > 1:4616473/1‑91 ACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGC < 1:3698146/91‑1 ACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGC > 2:5305639/1‑91 ACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGC < 1:3475491/91‑1 ACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGC > 1:2568475/1‑91 CTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCA < 2:1758641/91‑1 CTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCA < 2:4805001/91‑1 CTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCA < 2:2422011/91‑1 AAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCAAGC < 1:2332998/91‑1 AAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCAAGC < 1:513208/91‑1 AAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCAAGC < 2:583234/91‑1 AACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCAAGCT < 2:4369357/91‑1 AACAGCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCAAGCT < 2:2459986/91‑1 AACAGCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCAAGCT < 2:2459966/91‑1 ACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCAAGCTT < 2:3093711/91‑1 ACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCAAGCTT < 1:11247/91‑1 CATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCAAGCTTG < 1:4153348/91‑1 CATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCAAGCTTG < 1:4593938/91‑1 CATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCAAGCTTG < 1:4154318/91‑1 CATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCAAGCTTG < 2:1288992/91‑1 ATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCAAGCTTGT < 1:749690/91‑1 TTAGTACCCGGAGGAAGAAAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCAAGCTTGTTGG < 2:4001153/91‑1 GAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGTTTGGGCTCTTCCCATTTCGCT < 1:5470778/91‑1 GCGAAATGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCT > 1:4564437/1‑91 GAAACGGGAAGAGCCCAAACCAACAAGCTTGCTTGTTGGTTTGGGCTCTTCCCGTTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTT > 1:629099/1‑91 AACCAACAAGCTTGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACT > 2:3067393/1‑91 CCAACAAGCTTGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAA < 1:3024430/91‑1 CCAACAAGCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAA < 1:3833992/91‑1 CCAACAAGCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAA < 1:5677474/91‑1 CCAACAAGCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAA < 1:2314128/91‑1 CAACAAGCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAG < 2:1680682/91‑1 CAACAAGCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAG < 1:2285148/91‑1 CAACAAGCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAG < 2:2831865/91‑1 CAACAAGCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAG > 1:2377980/1‑91 AACAAGCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGA > 1:1365105/1‑91 AACAAGCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGA > 1:4282634/1‑91 AACAAGCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGA > 1:129912/1‑91 ACAAGCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGTCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGAT > 2:5412065/1‑91 ACAAGCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGTGAAACTAATTTTCTTCCTCTTCCTCCACGTACTAAGAT > 2:3436472/1‑91 ACAAGCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTGTTCCTCCGGGTACTAAGAT > 1:1493190/1‑91 ACAAGCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGAT > 2:5180549/1‑91 ACAAGCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGAT < 2:972434/91‑1 ACAAGCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGAT > 1:3436069/1‑91 CAAGCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGATG > 1:5045363/1‑91 AAGCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGATGT < 2:4593178/91‑1 AAGCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGATGT > 1:5620784/1‑91 AAGCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGATGT > 2:4063430/1‑91 AGCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGATGTT < 1:2251451/91‑1 AGCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGATGTT < 1:4004494/91‑1 AGCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGATGTT < 1:4003787/91‑1 GCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGATGTTT > 2:4863923/1‑91 GCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGATGTTT > 1:1159091/1‑91 GCAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGATGTTT > 2:4970114/1‑91 GCAAGCTTGTTGGATTGGGCTCTTCCCTTTACGCTCGCCGCTACTAAGCGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGATGTTT > 1:4660884/1‑91 CAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGATGTTTC > 1:113185/1‑91 CAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGATGTTTC > 2:1877165/1‑91 CAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGATGTTTC < 1:1616441/91‑1 CAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGATGTTTC > 1:1768839/1‑91 CAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGATGTTTC > 1:4234487/1‑91 CAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGATGTTTC > 2:2438713/1‑91 CAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGATGTTTC > 1:5559380/1‑91 CAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGATGTTTC > 2:4721290/1‑91 CAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGATGTTTC > 2:1177833/1‑91 CCCGGAGAACTGAAACATCTTAGTACCCGGAGGAAGAGAAAGAAAATTCGATTCCCTTAGTAGCGGCGAGCGAAATGGGAAGAGCCCAAACCAACAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/514889‑514987‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaacaagcAAGCTTGTTGGTTTGGGCTCTTCCCATTTCGCTCGCCGCTACTAAGGGAATCGAATTTTCTTTCTCTTCCTCCGGGTACTAAGATGTTTC < USA300TCH1516_ALE/514989‑514900 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |