BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2057377 =	215 (0.720)	14 (0.050)	8/138	NT	7.1%	intergenic (+134/+158)	USA300HOU_RS10370/USA300HOU_RS10375	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	2057415 =	180 (0.700)	14 (0.050)	8/138	NT	7.1%	intergenic (+172/+120)	USA300HOU_RS10370/USA300HOU_RS10375	hypothetical protein/hypothetical protein

Only 100 of 287 total aligned reads displayed.

TTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTT  >  USA300TCH1516_ALE/2057325‑2057505

ttAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGttt                                                                                            <  2:2591178/91‑1 (MQ=255)

   gAAAAAGCGACGCTATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTtctc                                                                                         <  2:3760308/91‑1 (MQ=255)

    aaaaaGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCa                                                                                        <  1:4700170/91‑1 (MQ=255)

     aaaaGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCAt                                                                                       >  1:1115848/1‑91 (MQ=255)

       aaGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATAc                                                                                     <  2:4396391/91‑1 (MQ=255)

       aaGCGACGATATATATAATCTAACAATAATCTTTACAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGATGGGGGTCTCTCATaa                                                                                     >  2:4758554/1‑90 (MQ=255)

          cgacgaTATATATAATCTAACAATAATTTTTAAACTATTAAGAATCCCCAGCATATACTTTATATGGCTTGCTGGGGGTTTCTCATACact                                                                                  <  2:4913137/91‑3 (MQ=255)

          cgacgaTATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAat                                                                                  >  1:4393396/1‑91 (MQ=255)

          cgacgaTATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAat                                                                                  <  2:4887513/91‑1 (MQ=255)

          cgacgaTATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAat                                                                                  >  1:2845734/1‑91 (MQ=255)

          cgacgaTATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAat                                                                                  >  2:5265645/1‑91 (MQ=255)

           gacgaTAGATATAATCTAACAATAATTTTTAAAATATTAAGAACCACCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAata                                                                                 <  2:5651307/91‑1 (MQ=255)

            acgaTATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAatat                                                                                >  1:2073636/1‑91 (MQ=255)

            acgaTATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAatat                                                                                <  2:5077855/91‑1 (MQ=255)

             cgaTATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATg                                                                               >  1:1053900/1‑91 (MQ=255)

              gaTATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATgg                                                                              >  2:625035/1‑91 (MQ=255)

               atatatatAATCTAACAATAAGTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGa                                                                             <  1:3950033/91‑1 (MQ=255)

                tatatataATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGAt                                                                            >  2:5513900/1‑91 (MQ=255)

                tatatataATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGAt                                                                            <  1:2699041/91‑1 (MQ=255)

                  tatataATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCg                                                                          <  2:5054791/91‑1 (MQ=255)

                   atataATCTAATAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGa                                                                         <  2:5835282/91‑1 (MQ=255)

                   atataATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGa                                                                         <  1:3719427/91‑1 (MQ=255)

                       aaTCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCAt                                                                     <  1:489455/91‑1 (MQ=255)

                         tCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCt                                                                   <  1:5536823/91‑1 (MQ=255)

                            aaCAATAATTTTTAAGATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGc                                                                <  2:3151327/91‑1 (MQ=255)

                            aaCAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGc                                                                <  1:1805504/91‑1 (MQ=255)

                            aaCAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGc                                                                >  1:660593/1‑91 (MQ=255)

                            aaCAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGc                                                                >  1:4214334/1‑91 (MQ=255)

                             aCAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCa                                                               <  1:1481504/91‑1 (MQ=255)

                              cAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCAt                                                              >  2:2165019/1‑91 (MQ=255)

                              cAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCAt                                                              >  1:2302919/1‑91 (MQ=255)

                                 taatTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGta                                                           <  1:4535765/91‑1 (MQ=255)

                                    tttttAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATaa                                                        <  1:5014436/91‑1 (MQ=255)

                                     ttttAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATaaa                                                       >  2:4502256/1‑91 (MQ=255)

                                     ttttAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATaaa                                                       >  1:1948253/1‑91 (MQ=255)

                                     ttttAAAATATTAAGAACCCCCAGCATATGCTTAATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATaaa                                                       >  1:5839911/1‑91 (MQ=255)

                                      tttAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAAc                                                      >  2:5553114/1‑91 (MQ=255)

                                         aaaaTATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACaaa                                                   <  1:2510077/91‑1 (MQ=255)

                                          aaaTATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAAt                                                  >  1:2934866/1‑91 (MQ=255)

                                            atatTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAg                                                <  2:2885976/91‑1 (MQ=255)

                                             tatTAAGAACTCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGTTCGAGCATCTTGCATGTATAAACAAATAgg                                               <  2:4666141/91‑1 (MQ=255)

                                             tatTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAgg                                               <  2:4774388/91‑1 (MQ=255)

                                              atTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGc                                              <  1:3872871/91‑1 (MQ=255)

                                              atTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGAATGTATAAACAAATAGGc                                              >  1:1248067/1‑91 (MQ=255)

                                              atTAAGAACCCCCAGCATATGCTTTATATAGCTCGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGc                                              >  1:5812277/1‑91 (MQ=255)

                                                 aaGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTAt                                           >  1:1347117/1‑91 (MQ=255)

                                                    AACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCa                                        >  1:582803‑M1/1‑91 (MQ=255)

                                                    AACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCa                                        <  1:599310‑M1/91‑1 (MQ=255)

                                                    AACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCa                                        <  1:4359972‑M1/91‑1 (MQ=255)

                                                    AACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCa                                        >  1:3550580‑M1/1‑91 (MQ=255)

                                                       CCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAg                                     >  1:2876586‑M1/1‑91 (MQ=255)

                                                        CCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGt                                    >  1:561902‑M1/1‑91 (MQ=255)

                                                        CCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGt                                    <  2:1768889‑M1/91‑1 (MQ=255)

                                                        CCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGt                                    >  2:1923105‑M1/1‑91 (MQ=255)

                                                            gcaagctatataaagcatatgctgggggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTaaaa                                >  2:1754331‑M2/31‑91 (MQ=255)

                                                            GCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTaaaa                                >  2:4187696‑M1/1‑91 (MQ=255)

                                                            GCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTaaaa                                <  1:3986772‑M1/91‑1 (MQ=255)

                                                            GCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTaaaa                                <  1:3618730‑M1/91‑1 (MQ=255)

                                                            GCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTaaaa                                >  2:5748607‑M1/1‑91 (MQ=255)

                                                             CATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAAt                               >  1:1041903‑M1/1‑91 (MQ=255)

                                                             CATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAAt                               >  1:887395‑M1/1‑91 (MQ=255)

                                                               agctatataaagcatatgctgggggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTa                             >  1:2197010‑M2/28‑91 (MQ=255)

                                                                atGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTAc                            <  1:57032/91‑1 (MQ=255)

                                                                atGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTAc                            <  1:2815260/91‑1 (MQ=255)

                                                                atGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTAc                            <  1:2598465/91‑1 (MQ=255)

                                                                atGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTAc                            >  1:5237405/1‑91 (MQ=255)

                                                                 tGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGACCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACt                           >  2:3936928/1‑91 (MQ=255)

                                                                 ctatataaagcatatgctgggggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACt                           >  2:1816079‑M2/26‑91 (MQ=255)

                                                                 ctatataaagcatatgctgggggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACt                           >  2:1034255‑M2/26‑91 (MQ=255)

                                                                  gCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTc                          >  2:725678/1‑91 (MQ=255)

                                                                  gCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTc                          >  2:4064368/1‑91 (MQ=255)

                                                                   cTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCa                         >  1:3696031/1‑91 (MQ=255)

                                                                   cTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCa                         >  2:2824267/1‑91 (MQ=255)

                                                                    tttATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCaa                        >  2:3589372/1‑91 (MQ=255)

                                                                      tatataGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAAc                      <  1:1212402/91‑1 (MQ=255)

                                                                      taaagcatatgctgggggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAAc                      >  1:3127706‑M2/21‑91 (MQ=255)

                                                                      taaagcatatgctgggggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAAc                      <  1:3211928‑M2/71‑1 (MQ=255)

                                                                       atataGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACt                     <  2:905232/91‑1 (MQ=255)

                                                                         ataGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACttt                   <  1:4038678/91‑1 (MQ=255)

                                                                            gCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGaa                >  1:5675088/1‑91 (MQ=255)

                                                                            gCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGaa                <  2:1398610/91‑1 (MQ=255)

                                                                            gCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGaa                >  2:4548975/1‑91 (MQ=255)

                                                                            gCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGaa                >  2:5368659/1‑91 (MQ=255)

                                                                             cTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAAt               >  2:1592420/1‑91 (MQ=255)

                                                                                gctgggggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGc            >  2:2735851‑M2/11‑91 (MQ=255)

                                                                                gctgggggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGc            >  1:1751007‑M2/11‑91 (MQ=255)

                                                                                gctgggggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGc            <  2:1562677‑M2/81‑1 (MQ=255)

                                                                                  tgggggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCt          <  1:4950686‑M2/83‑1 (MQ=255)

                                                                                  tgggggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCt          >  1:4481367‑M2/9‑91 (MQ=255)

                                                                                   gggggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCtt         <  1:1695304‑M2/84‑1 (MQ=255)

                                                                                    ggggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCttt        >  2:2526450‑M2/7‑91 (MQ=255)

                                                                                     gggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTc       <  2:3508108‑M2/86‑1 (MQ=255)

                                                                                       gttTCTCATACAATATGGTTCGAGCATCTTGCATGTAGAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCct     <  2:3258065‑M2/88‑1 (MQ=255)

                                                                                       gttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCct     <  2:2381260‑M2/88‑1 (MQ=255)

                                                                                       gttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCct     <  1:5738572‑M2/88‑1 (MQ=255)

                                                                                        ttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCctc    <  2:1701682‑M2/89‑1 (MQ=255)

                                                                                         tTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCctct   <  1:4610162‑M2/90‑1 (MQ=255)

                                                                                         tTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCctct   <  1:1530277‑M2/90‑1 (MQ=255)

                                                                                          tctcATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCtt  <  1:2411485/91‑1 (MQ=255)

                                                                                          tctcATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCtt  >  2:4301706/1‑91 (MQ=255)

TTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTT  >  USA300TCH1516_ALE/2057325‑2057505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.