| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2057377 = | 215 (0.720) | 14 (0.050) | 8/138 | NT | 7.1% | intergenic (+134/+158) | USA300HOU_RS10370/USA300HOU_RS10375 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 2057415 = | 180 (0.700) | intergenic (+172/+120) | USA300HOU_RS10370/USA300HOU_RS10375 | hypothetical protein/hypothetical protein | |||||
ATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2057476‑2057377‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgggggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCT > USA300TCH1516_ALE/2057415‑2057504 ATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATG > 1:1041903/1‑91ATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATG > 1:887395/1‑91ATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATG < 1:2607752/91‑1ATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATG < 2:4296499/91‑1 ttgTACTGTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCGAGCTATATAAAGCATATGC < 1:2671318/88‑1 TTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGC > 2:5748607/1‑91 TTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGC < 1:2866391/91‑1 TTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGC < 1:3986772/91‑1 TTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGC > 2:4187696/1‑91 TTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGC < 1:3618730/91‑1 TTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTG > 1:558485/1‑91 ACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGG < 2:1380984/91‑1 ACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGG > 1:561902/1‑91 ACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGG > 1:276767/1‑91 ACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGG < 2:1768889/91‑1 ACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGG > 2:1923105/1‑91 ACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGG > 1:3600777/1‑91 CTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGGG > 1:2876586/1‑91 TTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGGGG < 2:45411/91‑1 TTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGGGGT < 1:296915/91‑1 TTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGGGGT < 2:4773132/91‑1 TGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGGGGTT > 1:3550580/1‑91 TGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGGGGTT > 1:582803/1‑91 TGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGGGGTT < 1:599310/91‑1 TGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGGGGTT < 1:4359972/91‑1 CCCAGCAAGCTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAACATCTTGCATGTATAAACAAATAGGCTATTCAAAGT > 1:5062681/1‑91 CCAGCAAGCTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTA > 2:2846136/1‑91 GCAAGCTATATAAAGCATCTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAA > 2:171497/1‑91 GCAAGCTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAA > 2:1754982/1‑91 GCAAGCTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAA > 2:1754331/1‑91 GCAAGCTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAA > 2:1754404/1‑91 AGCTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTA > 1:2197010/1‑91 GCTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTAC > 1:1685623/1‑91 GCTATATAAAGCATATGCTGGGGGATTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAAGCTATTCAAAGTAAAATTAC > 1:2864566/1‑91 CTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACT > 2:1816079/1‑91 CTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACT > 2:3211928/1‑91 CTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACT > 2:1034255/1‑91 TAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAAC < 1:3211928/91‑1 TAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAAC > 1:3127706/1‑91 TGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAG < 1:1114094/91‑1 GCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGC > 1:1751007/1‑91 GCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGC < 2:1562677/91‑1 GCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGC < 2:1685623/91‑1 GCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGC < 2:651515/91‑1 GCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGC > 2:2735851/1‑91 GCTGGGGGTTTCTCATACAATATGGATCGAACATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGC > 2:4653487/1‑91 TGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCGAAGTAAAATTACTCAAACTTTGAATAGCCT > 1:4514545/1‑91 TGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCT > 2:2544887/1‑91 TGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCT < 1:4950686/91‑1 TGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCT > 1:4481367/1‑91 TGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCT > 1:4035930/1‑91 GGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTT < 1:1695304/91‑1 GGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTT < 2:5019454/91‑1 GGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTT < 1:1701569/91‑1 GGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAACAGGCTATTCAAAGTAAAATTACTCAAACTGTGAATAGCCTT > 2:5850918/1‑91 GGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTT > 2:2526450/1‑91 GGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTT > 1:4969634/1‑91 GGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTT < 2:2796295/91‑1 GGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTT < 1:373488/91‑1 GGGGTTTCTCATACAATATGGATCGAGCATCGTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTT > 2:2379546/1‑91 GGGTTTCTCATACAATATGGTTCGCGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTC > 2:2704211/1‑91 GGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTC < 2:1709225/91‑1 GGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTC > 2:1522123/1‑91 GGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTC < 2:3508108/91‑1 GGGTTTCTCAGACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCTAAGTAAAATTACTCAAACTTTGAATAGCCTTTC < 1:5839169/91‑1 GGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCC > 1:401437/1‑91 GGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCC < 2:5701388/91‑1 GGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCC > 1:4945529/1‑91 GGTTTCTCATACAATATGGACCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCC < 2:4176865/91‑1 GTTTCTCATACAATATGGTTCGAGCATCTTGCATGTAGAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCT < 2:3258065/91‑1 GTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCT < 1:5738572/91‑1 GTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCT < 2:2381260/91‑1 TTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTC < 2:1701682/91‑1 TTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCT < 1:3925145/91‑1 TTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCT < 2:509686/91‑1 TTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCT < 1:1530277/91‑1 TTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCT < 1:4610162/91‑1 TTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCT < 2:92688/91‑1 ATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2057476‑2057377‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgggggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCT > USA300TCH1516_ALE/2057415‑2057504 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |