BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	11093 =	922 (0.890)	49 (0.050)	19/146	NT	5.6%	intergenic (+98/‑166)	blaI/USA300HOU_pUSA300HOUMR0014	beta‑lactamase regulator BlaI/recombinase
*	?	CP000731	11129 =	809 (0.860)	49 (0.050)	19/146	NT	5.6%	intergenic (+134/‑130)	blaI/USA300HOU_pUSA300HOUMR0014	beta‑lactamase regulator BlaI/recombinase

Only 100 of 1237 total aligned reads displayed.

GACTCTTATTAAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTCGTAATCAA  >  CP000731/11039‑11219

gACTCTTATTAAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCtt                                                                                            <  1:4752388/91‑1 (MQ=255)

gACTCTTATTAAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCtt                                                                                            <  2:5312516/91‑1 (MQ=255)

gACTCTTATTAAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCtt                                                                                            >  2:3788034/1‑91 (MQ=255)

  ctctTATTAAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGt                                                                                          >  2:1072678/1‑91 (MQ=255)

    ctTATTAAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGttt                                                                                        <  1:2493811/91‑1 (MQ=255)

     ttattaAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGtttt                                                                                       <  1:2984776/91‑1 (MQ=255)

      tattaAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGttttt                                                                                      >  1:4221702/1‑91 (MQ=255)

      tattaAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGCCCAGAAAATAACCATTTTCTGTACACTCTTGttttt                                                                                      <  1:3831158/91‑1 (MQ=255)

       attaAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGATAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGtttttt                                                                                     >  2:2908989/1‑91 (MQ=255)

          aaaTTAGTTTTTTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTc                                                                                  >  1:168193/1‑91 (MQ=255)

            aTTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCtt                                                                                >  1:1502520/1‑90 (MQ=255)

               aGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAt                                                                             >  1:3743520/1‑91 (MQ=255)

                gTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAta                                                                            >  2:3540899/1‑91 (MQ=255)

                gTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAta                                                                            >  1:4532162/1‑91 (MQ=255)

                gTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAta                                                                            <  2:5399899/91‑1 (MQ=255)

                gTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAta                                                                            >  2:3863705/1‑91 (MQ=255)

                 ttttGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAtaa                                                                           <  2:1470260/91‑1 (MQ=255)

                 ttttGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAtaa                                                                           <  1:2689975/91‑1 (MQ=255)

                 ttttGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAtaa                                                                           <  2:1910771/91‑1 (MQ=255)

                  tttGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAtaag                                                                          <  2:4454817/91‑1 (MQ=255)

                   ttGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAtaagt                                                                         >  1:1796816/1‑91 (MQ=255)

                   ttGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAtaagt                                                                         <  2:812243/91‑1 (MQ=255)

                   ttGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAtaagt                                                                         >  2:5840627/1‑91 (MQ=255)

                     gTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAtaagtaa                                                                       >  1:13866/1‑91 (MQ=255)

                     gTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAtaagtaa                                                                       >  2:158602/1‑91 (MQ=255)

                          tGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAattatt                                                                  >  2:5220939/1‑91 (MQ=255)

                          tGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTAtt                                                                  <  1:2598405/91‑1 (MQ=255)

                          tGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTAtt                                                                  >  2:298597/1‑91 (MQ=255)

                             cATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACa                                                               <  1:2210771/91‑1 (MQ=255)

                              aTTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACAt                                                              <  1:3616083/91‑1 (MQ=255)

                              aTTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACAt                                                              >  2:1344407/1‑91 (MQ=255)

                               tttAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATa                                                             >  1:2412037/1‑91 (MQ=255)

                               tttAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATa                                                             <  1:492499/91‑1 (MQ=255)

                                 tAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGa                                                           <  1:4318959/91‑1 (MQ=255)

                                 tAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGa                                                           >  1:4622293/1‑91 (MQ=255)

                                  aaaaTATATTATTAAAGATGAGATTGTCCATAAAATAACAATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGaa                                                          <  2:4377707/91‑1 (MQ=255)

                                  aaaaTATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGaa                                                          <  1:669097/91‑1 (MQ=255)

                                  aaaaTATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGaa                                                          >  1:2841678/1‑91 (MQ=255)

                                   aaaTATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAAt                                                         >  1:5033924/1‑91 (MQ=255)

                                     atatatTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAGATAAGTAAGTATTACATAGAATTa                                                       <  1:5663091/91‑1 (MQ=255)

                                        tattatTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTAtgt                                                    <  1:2922067/91‑1 (MQ=255)

                                        tattatTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTAtgt                                                    <  1:3171935/91‑1 (MQ=255)

                                        tattatTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTAtgt                                                    >  2:3087004/1‑91 (MQ=255)

                                          ttattaAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTTTCTAAATAATTACGTATTACATAGAATTATgtgt                                                  >  2:429830/1‑91 (MQ=255)

                                          ttattaAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATgtgt                                                  <  1:4368797/91‑1 (MQ=255)

                                          ttattaAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATgtgt                                                  >  1:411989/1‑91 (MQ=255)

                                            attaAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTc                                                <  2:3228468/91‑1 (MQ=255)

                                            attaAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAATAAGTATTACATAGAATTATGTGCTc                                                >  2:2410501/1‑91 (MQ=255)

                                             ttaAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCa                                               <  1:5239038/91‑1 (MQ=255)

                                              taAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCaa                                              >  2:5117789/1‑91 (MQ=255)

                                                aaaacaAGAGTGTACAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGACTAAATAAGTAAGTATTACATAGAATTATGTGTTCaaaa                                            <  2:5540987‑M1/85‑1 (MQ=255)

                                                  gATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAATTAAGTATTACATAGAATTATTTGTTCAATAAc                                          >  2:3684620/1‑91 (MQ=255)

                                                    tGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAAccc                                        >  2:748215/1‑91 (MQ=255)

                                                    tGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAAccc                                        >  1:200675/1‑91 (MQ=255)

                                                    tGAGAGCGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAAccc                                        >  2:2201326/1‑91 (MQ=255)

                                                     gagaGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCca                                       <  2:4717179/91‑1 (MQ=255)

                                                      AGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTCAGTATTACATAGATTTATGTGTTCACAAACCcaa                                      <  2:1793226‑M1/91‑1 (MQ=255)

                                                      AGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCcaa                                      <  2:897456‑M1/91‑1 (MQ=255)

                                                      AGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGCATTACATAGAATTATGTGTTCAAAAACCcaa                                      <  1:5443683‑M1/91‑1 (MQ=255)

                                                       GAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCcaac                                     >  2:4544642‑M1/1‑91 (MQ=255)

                                                        AGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCcaaca                                    >  1:5139374‑M1/1‑91 (MQ=255)

                                                        AGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCcaaca                                    <  2:2730348‑M1/91‑1 (MQ=255)

                                                         gtgtacagaaaatggttattttctggacactctTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCcaacaa                                   >  2:2836591‑M2/34‑91 (MQ=255)

                                                         GTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTTTATTTTATTAAGTATTACATAGAATTATGTGTTCAAAAACCcaacaa                                   <  2:5738479‑M1/91‑1 (MQ=255)

                                                         GTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCcaacaa                                   >  1:2135257‑M1/1‑91 (MQ=255)

                                                         GTGTCCAGAAAATAACAATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCcaacaa                                   <  2:4130851‑M1/91‑1 (MQ=255)

                                                           GTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACaaaa                                 >  1:3525195‑M1/1‑91 (MQ=255)

                                                           GTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACaaaa                                 <  1:5372407‑M1/91‑1 (MQ=255)

                                                            TCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACaaaaa                                <  1:2314472‑M1/91‑1 (MQ=255)

                                                            TCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAAAAGTAAGTATTACATAGAATTATGTGTTCAAAAACACAACaaaaa                                >  2:2083850‑M1/1‑91 (MQ=255)

                                                              cAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAAt                              >  1:1133999/1‑91 (MQ=255)

                                                              cAGAAAATAACCATATTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTAAAAAAAAAAACAAAAAAt                              <  2:3363264/91‑1 (MQ=255)

                                                               aGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATc                             >  2:4230667/1‑91 (MQ=255)

                                                                gAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCt                            <  2:5636650/91‑1 (MQ=255)

                                                                 aaaatggttattttctggacactctTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTa                           >  2:3406894‑M2/26‑91 (MQ=255)

                                                                 aaaaTAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTa                           >  2:638251/1‑91 (MQ=255)

                                                                  aaatggttattttctggacactctTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTAt                          >  1:1572945‑M2/25‑91 (MQ=255)

                                                                  aaaTAACCAGTGTCTGTACACGCTTGTTTTTTGTCTAAAGAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTAt                          <  2:2310286/91‑1 (MQ=255)

                                                                   aaTAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATg                         >  2:4634830/1‑91 (MQ=255)

                                                                    aTAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGt                        >  1:3969868/1‑91 (MQ=255)

                                                                     tAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGtt                       >  1:551456/1‑91 (MQ=255)

                                                                       aCCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTca                     >  1:3421097/1‑91 (MQ=255)

                                                                        ccATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTcac                    >  1:1890051/1‑91 (MQ=255)

                                                                        ccATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTcac                    <  1:33161/91‑1 (MQ=255)

                                                                          aTTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACaa                  >  1:1010069/1‑91 (MQ=255)

                                                                          aTTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACaa                  <  1:5851056/91‑1 (MQ=255)

                                                                          aTTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACaa                  <  1:956333/91‑1 (MQ=255)

                                                                             ttCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAg               <  2:2616405/91‑1 (MQ=255)

                                                                               cTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGAc             <  2:4852331/91‑1 (MQ=255)

                                                                                 gTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCt           <  2:2524308/91‑1 (MQ=255)

                                                                                  tACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTc          >  1:128499/1‑91 (MQ=255)

                                                                                    cactctTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTCGt        <  1:2768759‑M2/85‑1 (MQ=255)

                                                                                    cactctTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTCGt        >  2:400237‑M2/7‑91 (MQ=255)

                                                                                      ctctTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTCGTaa      <  2:1194279‑M2/87‑1 (MQ=255)

                                                                                       tctTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTCGTAAt     <  1:5766442‑M2/88‑1 (MQ=255)

                                                                                         tTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTCGTAATCa   >  1:5600087‑M2/2‑91 (MQ=255)

                                                                                         tTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTCGTAATCa   <  1:811885‑M2/90‑1 (MQ=255)

                                                                                          tGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTCGTAATCaa  <  2:5005327/91‑1 (MQ=255)

                                                                                          tGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTCGTAATCaa  <  1:3053623/91‑1 (MQ=255)

                                                                                          tGTTTTTTGGCTAAATAAGGAAGTATTACATAGAAGTATGTGTGCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTCGTAATCaa  <  2:1958656/91‑1 (MQ=255)

GACTCTTATTAAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTCGTAATCAA  >  CP000731/11039‑11219

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.