BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 891727	163 (0.550)	16 (0.060)	7/142	NT	8.1%	intergenic (+145/‑594)	USA300HOU_RS04385/rnmV_2	hypothetical protein/Ribonuclease M5
*	?	USA300TCH1516_ALE	= 1469857	221 (0.840)	16 (0.060)	7/142	NT	8.1%	coding (97/132 nt)	USA300TCH1516_01369	hypothetical protein

Only 100 of 308 total aligned reads displayed.

TACACAAAAGAATAAGTTTTAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGCTGACTTTTCGTCATCTTCTGTGTTGGG  >  USA300TCH1516_ALE/1469767‑1469947

tacACAAAAGAATAAGTTTTAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGt                                                                                            <  2:3285924/91‑1 (MQ=255)

tacACAAAAGAATAAGTTTTAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGt                                                                                            <  2:3469077/91‑1 (MQ=255)

tacACAAAAGAATAAGTTTTAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTAGCATTGTCTGt                                                                                            <  2:5817696/91‑1 (MQ=255)

 acacAAAAGAATAAGTTTTAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTa                                                                                           <  2:5217166‑M2/91‑2 (MQ=255)

 acacAAAAGAATAAGTTTTAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTa                                                                                           <  2:3950380‑M2/91‑2 (MQ=255)

  cacaAAAGAATAAGTTTTAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTag                                                                                          <  1:2915418‑M2/91‑3 (MQ=255)

   acaAAAGAATAAGTTTTAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTaga                                                                                         <  1:1831144‑M2/91‑4 (MQ=255)

    caAAAGAATAAGTTTTAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTagaa                                                                                        >  1:5378141‑M2/1‑87 (MQ=255)

    caAAAGAATAAGTTTTAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTagaa                                                                                        >  1:4431368‑M2/1‑87 (MQ=255)

    aaaaagAATAAGTTTTAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTagaa                                                                                        >  2:501236‑M2/2‑87 (MQ=255)

        aGAATAAGTTTTAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTagaaattg                                                                                    <  1:957653‑M2/91‑9 (MQ=255)

         gAATAAGTTTTAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTagaaattgg                                                                                   >  1:4100583‑M2/1‑82 (MQ=255)

           aTAAGTTTTAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGa                                                                                 >  1:852336/1‑91 (MQ=255)

             aaGTTTTAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAt                                                                               >  2:3193849/1‑91 (MQ=255)

             aaGTTTTAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAt                                                                               <  1:2652850/91‑1 (MQ=255)

              aGTTTTAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATc                                                                              >  1:3034125/1‑91 (MQ=255)

              aGTTTTAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATc                                                                              >  1:1173828/1‑91 (MQ=255)

              aGTTTTAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATc                                                                              >  1:268125/1‑91 (MQ=255)

               gTTTTAAGGTAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATcc                                                                             <  2:1350784/91‑1 (MQ=255)

               gTTTTAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTagaaattggattccc                                                                             >  2:5554922‑M2/1‑76 (MQ=255)

               gTTTTAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATcc                                                                             <  2:2243489/91‑1 (MQ=255)

               gTTTTAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATcc                                                                             <  2:4051834/91‑1 (MQ=255)

               attttAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATcc                                                                             <  2:785548/90‑1 (MQ=255)

                ttttAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCa                                                                            >  1:626851/1‑91 (MQ=255)

                 tttAAGGGAGTAGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCaa                                                                           <  2:5851127/91‑1 (MQ=255)

                  ttAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAAt                                                                          <  2:2654828/91‑1 (MQ=39)

                  ttAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAAt                                                                          >  2:3674239/1‑91 (MQ=255)

                   tAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAAtt                                                                         <  2:3807314/91‑1 (MQ=37)

                   tAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAAtt                                                                         >  2:3392560/1‑91 (MQ=38)

                    aaGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTCCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAAttt                                                                        >  2:4392579/1‑91 (MQ=37)

                        gAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTctct                                                                    >  2:4321376/1‑91 (MQ=34)

                        gAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTctct                                                                    <  1:4219380/91‑1 (MQ=34)

                         aGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCtt                                                                   <  1:3937354/91‑1 (MQ=34)

                         aGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCtt                                                                   <  1:2362824/91‑1 (MQ=34)

                         aGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCtt                                                                   <  1:4366597/91‑1 (MQ=34)

                         aGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCtt                                                                   >  1:1905552/1‑91 (MQ=34)

                          gTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCttt                                                                  <  1:1921758/91‑1 (MQ=34)

                           tGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTttg                                                                 >  2:1712883/1‑91 (MQ=34)

                            gggACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTttgt                                                                >  1:3225070/1‑91 (MQ=34)

                             ggACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTttgtt                                                               <  2:570246/91‑1 (MQ=33)

                              gACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTagaaattggattcccaatttctacagacaa                                                              >  1:3630431‑M2/1‑61 (MQ=255)

                               aCAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTgg                                                             <  2:847476/91‑1 (MQ=33)

                               aCAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTgg                                                             <  2:5071390/91‑1 (MQ=33)

                               aCAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTgg                                                             <  2:1630603/91‑1 (MQ=34)

                                cAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTggg                                                            <  2:5416082/91‑1 (MQ=34)

                                   aaaTAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGcc                                                         >  2:900072/1‑91 (MQ=33)

                                   aaaTAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGcc                                                         <  1:900072/91‑1 (MQ=34)

                                   aaaTAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGcc                                                         <  1:5018063/91‑1 (MQ=34)

                                   aaaTAATAGTTACGCATAATTTATTTCATCGTCCCACCCCAACTTGCATTGGCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGcc                                                         <  1:2427030/91‑1 (MQ=11)

                                      taataTTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAt                                                      >  1:691088/1‑91 (MQ=32)

                                      taataTTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAt                                                      >  2:667492/1‑91 (MQ=32)

                                      taataTTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAt                                                      >  1:4339341/1‑91 (MQ=32)

                                      taataTTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAt                                                      >  2:2449864/1‑91 (MQ=32)

                                      taataTTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAt                                                      >  2:1943906/1‑91 (MQ=32)

                                       aataTTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGACTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATc                                                     <  1:4577225/91‑1 (MQ=14)

                                         tatTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTagaaattgggaatccaatttctacagacaatgcaagttggg                                                   >  2:2356466‑M2/1‑50 (MQ=255)

                                           ttttCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCaa                                                 >  2:360643/1‑91 (MQ=32)

                                            tttCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCaaa                                                >  1:2763186/1‑91 (MQ=33)

                                              tCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACt                                              <  1:1052604/91‑1 (MQ=34)

                                                gCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTg                                            <  1:168934/91‑1 (MQ=34)

                                                gCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTg                                            <  2:1748006/91‑1 (MQ=33)

                                                gCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTg                                            <  2:1210163/91‑1 (MQ=34)

                                                   aaaTTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGcac                                         >  1:1474085/1‑91 (MQ=34)

                                                   aaaTTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGcac                                         <  2:1413153/91‑1 (MQ=34)

                                                    aaTTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGcaca                                        >  1:1561233/1‑91 (MQ=33)

                                                     atttatttCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACat                                       <  1:3291652/91‑1 (MQ=34)

                                                     atttatttCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACat                                       <  1:4741823/91‑1 (MQ=34)

                                                         atttCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACattatt                                   <  1:2300790/91‑1 (MQ=34)

                                                          tttCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACattattt                                  >  2:2131770/1‑90 (MQ=21)

                                                          tttCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTg                                  >  1:5847536/1‑91 (MQ=34)

                                                           ttCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGt                                 <  1:46223/91‑1 (MQ=34)

                                                            tcgtcgTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTa                                >  2:1482644/1‑91 (MQ=34)

                                                            tcgtcgTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTa                                <  1:3160726/91‑1 (MQ=34)

                                                             cgtcgtCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTaa                               >  2:4448776/1‑91 (MQ=34)

                                                               tcgtcCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGc                             <  2:2904578/91‑1 (MQ=34)

                                                               tcgtcCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGc                             <  2:2816666/91‑1 (MQ=34)

                                                               tcgtcCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGc                             <  1:1357618/91‑1 (MQ=34)

                                                                 gtcCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGCTg                           <  1:4151431/91‑1 (MQ=34)

                                                                  tcCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGc                             >  1:3422755/1‑88 (MQ=33)

                                                                   cccACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGCTGAc                         >  1:1447593/1‑91 (MQ=33)

                                                                    ccACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGCTGACt                        >  1:5508990/1‑91 (MQ=34)

                                                                          cAACTTGCATTTTCTGTagaaattgggaatccaatttctacagacaatgcaagttggggtgtgacgacgaaataatttttgcgaaaatatt                  <  2:1550833‑M2/91‑75 (MQ=255)

                                                                           aaCTTGCATTGTCTGTAGAAATTGGGAATCCAACTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGCTGACTTTTCGTc                 <  2:4859666/91‑1 (MQ=18)

                                                                            aCTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGCTGACTTTTCGTCa                >  1:5192888/1‑91 (MQ=34)

                                                                            aCTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGCTGACTTTTCGTCa                <  1:3883951/91‑1 (MQ=34)

                                                                             cTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGCTGACTTTTCGTCAt               >  1:2152033/1‑91 (MQ=35)

                                                                              ttGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGCTGACTTTTCGTCAtc              <  1:5569519/91‑1 (MQ=37)

                                                                               tGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGCTGACTTTTCGTCAtct             <  2:1254718/91‑1 (MQ=38)

                                                                                 cATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGCTGACTTTTCGTCAtcttc           >  1:38155/1‑91 (MQ=38)

                                                                                 cATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGCTGACTTTTCGTCAtcttc           <  2:1036954/91‑1 (MQ=38)

                                                                                 cATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGCTGACTTTTCGTCAtcttc           >  1:5245130/1‑91 (MQ=39)

                                                                                 cATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGCTGACTTTTCGTCAtcttc           >  1:2984872/1‑91 (MQ=39)

                                                                                    tGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGCTGACTTTTCGTCATCTTCtgt        <  2:4125647/91‑1 (MQ=39)

                                                                                    tGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGCTGACTTTTCGTCATCTTCtgt        >  1:764150/1‑91 (MQ=39)

                                                                                     gTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGCTGACTTTTCGTCATCTTCtgtg       <  2:1831144/91‑1 (MQ=39)

                                                                                     gTCTGTAGAAATTGGGAACCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTACGCTGACCTTTCGTCATCTTCtgtg       >  2:3652119/1‑91 (MQ=255)

                                                                                       cTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGCTGACTTTTCGTCATCTTCTGTGtt     <  1:2011389/91‑1 (MQ=39)

                                                                                        tGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGCTGACTTTTCGTCATCTTCTGTGTTg    <  2:4938052/91‑1 (MQ=38)

                                                                                        tGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGCTGACTTTTCGTCATCTTCTGTGTTg    >  2:2062200/1‑91 (MQ=38)

                                                                                          tAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGCTGACTTTTCGTCATCTTCTGTGTTggg  >  2:4684028/1‑91 (MQ=39)

TACACAAAAGAATAAGTTTTAAGGGAGTGGGACAGAAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCAAACTTGCACATTATTGTAAGCTGACTTTTCGTCATCTTCTGTGTTGGG  >  USA300TCH1516_ALE/1469767‑1469947

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.