| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 891727 | 163 (0.550) | 16 (0.060) | 7/142 | NT | 8.1% | intergenic (+145/‑594) | USA300HOU_RS04385/rnmV_2 | hypothetical protein/Ribonuclease M5 |
| ? | USA300TCH1516_ALE | = 1469857 | 221 (0.840) | coding (97/132 nt) | USA300TCH1516_01369 | hypothetical protein | |||||
TCAATCTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/891629‑891727‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaatttctACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCTTTTGTGT < USA300TCH1516_ALE/1469857‑1469768 TCAATCTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑C > 1:3241897/1‑91TCAATCTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑C > 1:1784018/1‑91TCAATCTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑C > 1:2117798/1‑91TCAATCTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑C > 2:5156289/1‑91TCAATCTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑C > 2:4240756/1‑91 CAATCTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CC < 2:2145084/91‑1 CAATCTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CC > 2:560199/1‑91 CAATCTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CC < 1:1997311/91‑1 CAATCTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CC < 1:2752567/91‑1 AATCTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCA > 1:4700116/1‑91 ATCTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAA > 2:1132580/1‑91 ATCTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAA > 1:3039272/1‑91 ATCTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAA > 1:3614530/1‑91 ATCTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAA < 1:2513419/91‑1 TCTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAAT > 2:4872812/1‑91 TCTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAAT < 1:1889450/91‑1 TCTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAAT < 1:1511701/91‑1 TCTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAAT > 2:3565795/1‑91 CTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATT > 2:4578509/1‑91 CTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATT < 2:2847792/91‑1 CTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATT > 2:1649356/1‑91 CTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATT < 1:3183483/91‑1 CTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATAGGGAAT‑CCAATT > 2:3771188/1‑91 CTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATCGTCTGTAGAAATTGGGAAT‑CCAATT > 2:3849029/1‑91 TAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTT > 2:1292752/1‑91 TAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTT < 2:1943149/91‑1 AGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTC > 2:3539484/1‑91 AGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTC > 1:41296/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCc > 2:2735486/1‑90 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 2:1641721/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 1:513845/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 1:2797896/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 1:4663283/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 2:5090406/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 2:5414073/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 2:2735522/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 1:3772073/1‑91 AAATAATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑GGATTCCCAATTTCTACAGACAATGCAA < 2:5370437/91‑1 ATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTA‑AAATTGCGAAA‑AGAAATTCTACAGGCAATGCAAGTT < 2:3302560/91‑1 aATATTTTCGCAAAAATTATTTCGTCGTCACACCCCAACTTGCATTGTCTGTAGAAATT‑GGATTCCCAATTTCTACAGAAAATGCAAGTTG < 2:1550833/90‑1 GATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTG < 1:5226313/91‑1 ATTTTCGCAAAATTTATTTCGTCGTCCCACCTCAACTTGCATTTTCTGTAGCAGTTTGGAAT‑CCAATCTCTACTGACAATCCAATTTGGGG > 2:2971752/1‑91 TTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAA < 1:915500/91‑1 TTATTTCGTCGTCCCACCCCAACTTGCATTGTATGTAGAAATTGGGTTC‑CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAA < 2:5353234/91‑1 TTATTTCGCCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGATTC‑CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGGCGAAA < 1:4588241/91‑1 TCGTCGTCCCACCCCAACTTACATTGTCTGTAGAAATTGGGAAT‑CCAATTTCTACAGACAATGTAAGTTGGGGTGGGACGACGAAATAAAT > 2:1287456/1‑91 CCCAACTTGCATTGTCTGTAGAAATTGGATTC‑CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATA > 2:2356466/1‑91 TTGTCTGTAGAAATTGGGAAT‑CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAGTATCATTTCTGTC > 1:3630431/1‑91 TTGTCTCTAGAAATTGGGAAT‑CCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTC > 2:1190221/1‑91 TCTGTAGAAATTGGGAAT‑CCAATTTCTACAGACAATGTAAGTTGGGGTGGGACGACGAAATAAATTTTGAGAAAATATCATTTCTGTCCCA > 1:4097196/1‑91 CTGTAGAAATTGGGAAT‑CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAGTATCATTTCTGTCCCAC > 1:281314/1‑91 AGAAATTGGGAAT‑CCAATTTCTCCAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCC > 1:245039/1‑91 GGGAAT‑CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAAC > 2:5554922/1‑91 GAAT‑CCAATTTCTACAGACAATGCAAGTTGGGGTGAGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTT > 2:5655821/1‑91 AT‑CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTAT > 2:3239796/1‑91 CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTC > 1:860497/1‑91 CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTC > 1:2420019/1‑91 CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTC < 2:1417943/91‑1 CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTC > 1:2421843/1‑91 CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTC > 1:4100583/1‑91 CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACATATTC < 2:5736618/91‑1 CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCGTAAAACTTATTC > 2:3766959/1‑91 CAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCT > 2:2714918/1‑91 CAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCT < 1:957653/91‑1 CAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCT > 2:3288161/1‑91 CAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCT < 2:414537/91‑1 CAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCT < 2:4749420/91‑1 AATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCTT < 1:1463155/91‑1 ATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCTTT > 1:294243/1‑91 TTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCTTTT > 1:2740612/1‑91 TTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCTTTT < 1:4938052/91‑1 TTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCTTTTt > 2:501236/1‑90 TTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCTTTTG > 1:5378141/1‑91 TTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCTTTTG > 1:4431368/1‑91 TCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCTTTTGT > 1:4596639/1‑91 TCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCTTTTGT < 2:806663/91‑1 TCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCTTTTGT > 1:1369111/1‑91 TCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCTTTTGT < 1:1831144/91‑1 TCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCTTTTGT > 1:1906536/1‑91 TCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCTTTTGT > 2:2376475/1‑91 TCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCTTTTGT > 1:597968/1‑91 TCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCTTTTGT < 2:1710926/91‑1 CTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCTTTTGTG > 1:3853428/1‑91 CTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCTTTTGTG < 1:2915418/91‑1 CTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCTTTTGTG > 1:5333066/1‑91 TACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCTTTTGTGT < 2:5217166/91‑1 TACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCTTTTGTGT < 1:511306/91‑1 TACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCTTTTGTGT > 2:4103281/1‑91 TACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCTTTTGTGT < 2:3950380/91‑1 TCAATCTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/891629‑891727‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaatttctACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATTATTTCTGTCCCACTCCCTTAAAACTTATTCTTTTGTGT < USA300TCH1516_ALE/1469857‑1469768 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |