New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2256396 =189 (0.630)11 (0.040) 8/132 NT 6.4% intergenic (+49/+72) deoD1/dps Purine nucleoside phosphorylase DeoD‑type 1/General stress protein 20U
?USA300TCH1516_ALE 2256443 = 168 (0.680)intergenic (+96/+25) deoD1/dps Purine nucleoside phosphorylase DeoD‑type 1/General stress protein 20U

Only 100 of 326 total aligned reads displayed.

TAAATTGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACAT  >  USA300TCH1516_ALE/2256354‑2256533
                                                                                         |                                                                                          
 aaaTTGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTtttatt                                                                                          <  1:4581897/91‑1 (MQ=255)
 aaaTTGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTtttatt                                                                                          <  2:2931189/91‑1 (MQ=255)
  aaTTGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTtttattt                                                                                         <  2:1452497/91‑1 (MQ=255)
  aaTTGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTtttattt                                                                                         >  1:3344819/1‑91 (MQ=255)
  aaTTGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTtttattt                                                                                         <  2:1146902/91‑1 (MQ=255)
  aaTTGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTtttattt                                                                                         <  1:2329972/91‑1 (MQ=255)
  aaTTGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTtttattt                                                                                         <  1:5789072/91‑1 (MQ=255)
   aTTGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTtttattta                                                                                        >  1:2977239/1‑91 (MQ=255)
    ttGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTttatttat                                                                                       <  2:4079823/91‑1 (MQ=255)
      gACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCTAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTatat                                                                                     <  1:5697739/91‑1 (MQ=255)
      gACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTatat                                                                                     >  1:2038847/1‑91 (MQ=255)
       aCTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTAtatt                                                                                    <  2:3258570/91‑1 (MQ=255)
       aCTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTAtatt                                                                                    >  2:2147434/1‑91 (MQ=255)
       aCTTTAATTGCCCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATCCTGGGCGTATCCCCATTTATGTGTTGGCTCTTATTTAtatt                                                                                    >  2:5829864/1‑91 (MQ=255)
        cTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTAtattt                                                                                   >  2:3392231/1‑90 (MQ=255)
         tttAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTCTCCCCATTTATGTGTTGGCTTTTATTTAtattat                                                                                  <  2:3472714/91‑1 (MQ=255)
          ttAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATattatt                                                                                 >  2:3094582/1‑91 (MQ=255)
           tAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATAttatta                                                                                <  1:9873/91‑1 (MQ=255)
           tAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATAttatta                                                                                <  2:3772920/91‑1 (MQ=255)
               tGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTa                                                                            <  2:67185/91‑1 (MQ=255)
                gCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTAt                                                                           <  1:4262256/91‑1 (MQ=255)
                gCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTAt                                                                           <  1:5486979/91‑1 (MQ=255)
                 ctctTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATc                                                                          <  1:5027123/91‑1 (MQ=255)
                  tctTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCt                                                                         >  1:822344/1‑91 (MQ=255)
                   ctTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTg                                                                        >  2:1720238/1‑91 (MQ=255)
                   ctTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTg                                                                        >  1:3454871/1‑91 (MQ=255)
                    tttAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGt                                                                       >  2:4384296/1‑91 (MQ=255)
                     ttAACAATGCGATTAAACTCAAAAAGCCAACTCATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTa                                                                      <  2:3913806/91‑1 (MQ=255)
                     ttAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTa                                                                      <  2:4712495/91‑1 (MQ=255)
                       aaCAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGa                                                                    <  1:3229325/91‑1 (MQ=255)
                        aCAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGAt                                                                   >  1:2587903/1‑91 (MQ=255)
                           aTGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAg                                                                >  2:4742224/1‑91 (MQ=255)
                             gCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCt                                                              <  1:3679239/91‑1 (MQ=255)
                             gCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCt                                                              >  2:5251900/1‑91 (MQ=255)
                             gCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCt                                                              >  1:5109457/1‑91 (MQ=255)
                             gCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCt                                                              >  2:866630/1‑91 (MQ=255)
                              cGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCtt                                                             >  2:931068/1‑91 (MQ=255)
                              cGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCtt                                                             >  1:1910917/1‑91 (MQ=255)
                              cGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCCTTTATTTATATTATTACTTATCTGTAGATTAGCtt                                                             >  1:1703853/1‑91 (MQ=255)
                                aTTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTtaa                                                           >  1:4785513/1‑91 (MQ=255)
                                aTTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTAACTGTAGATTAGCTtaa                                                           <  2:4502010/91‑1 (MQ=255)
                                  tAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTtaagt                                                         <  1:302775/91‑1 (MQ=255)
                                  tAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTtaagt                                                         <  1:1223405/91‑1 (MQ=255)
                                   aaaCTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTtaagta                                                        >  2:54135/1‑91 (MQ=255)
                                    aaCTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTtaagtaa                                                       >  2:253979/1‑91 (MQ=255)
                                       tCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGAt                                                    <  2:2437955/91‑1 (MQ=255)
                                        cAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGAtt                                                   <  2:4947330/91‑1 (MQ=255)
                                         aaaaaGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGAttt                                                  >  1:1958633/1‑91 (MQ=255)
                                         aaaaaGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGAttt                                                  >  1:880377/1‑91 (MQ=255)
                                         aaaaaGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGAttt                                                  >  2:2824367/1‑91 (MQ=255)
                                          AAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTa                                                 <  1:1029652‑M1/91‑1 (MQ=255)
                                          AAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTa                                                 <  1:3573314‑M1/91‑1 (MQ=255)
                                          AAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCCGTAGATTAGCTTAAGTAAGATTTa                                                 <  1:2548909‑M1/91‑1 (MQ=255)
                                            AAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTaaa                                               >  2:5020656‑M1/1‑91 (MQ=255)
                                            AAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTaaa                                               >  2:4176673‑M1/1‑91 (MQ=255)
                                            AAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTaaa                                               >  1:2653745‑M1/1‑91 (MQ=255)
                                             AGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAAc                                              <  2:4405148‑M1/91‑1 (MQ=255)
                                             AGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAAc                                              <  1:2262570‑M1/91‑1 (MQ=255)
                                             AGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTAGTTATATTATGACTTATCTGTAGATTAGCTTAAGTAAGATTTAAAc                                              >  2:5652370‑M1/1‑91 (MQ=255)
                                              GCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACa                                             >  2:2486146‑M1/1‑91 (MQ=255)
                                               CCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACAt                                            <  1:2852341‑M1/91‑1 (MQ=255)
                                                CAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATc                                           <  2:5361104‑M1/91‑1 (MQ=255)
                                                  ACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCa                                         <  1:133226‑M1/91‑1 (MQ=255)
                                                   CACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCaa                                        >  1:4405148‑M1/1‑91 (MQ=255)
                                                    ACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAAt                                       <  1:5391245‑M1/91‑1 (MQ=255)
                                                        tCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCGATTATg                                   <  2:3839787/91‑1 (MQ=255)
                                                        aaatggggatacgcccagaatgtgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATg                                   >  1:749740‑M2/34‑91 (MQ=255)
                                                             gCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAAc                                              <  1:1395295/75‑1 (MQ=255)
                                                             gCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAAc                                              >  2:1395295/1‑75 (MQ=255)
                                                               gTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCt                            >  1:1870815/1‑91 (MQ=255)
                                                                tATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTa                           <  2:1291594/91‑1 (MQ=255)
                                                                tATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTa                           <  1:5276593/91‑1 (MQ=255)
                                                                 aTCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTAc                          >  1:5589102/1‑91 (MQ=255)
                                                                  tCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACt                         <  1:4491845/91‑1 (MQ=255)
                                                                    cccATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGa                       <  2:1779576/91‑1 (MQ=255)
                                                                     ccATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGAt                      >  1:4002783/1‑91 (MQ=255)
                                                                      ccagaatgtgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATg                     <  2:271747‑M2/72‑1 (MQ=255)
                                                                      cATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATg                     <  1:3127484/91‑1 (MQ=255)
                                                                       aTTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGt                    <  2:3570716/91‑1 (MQ=255)
                                                                       aTTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGt                    >  1:4630834/1‑91 (MQ=255)
                                                                        tttATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGtt                   <  2:5471580/91‑1 (MQ=255)
                                                                          tATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTg                 <  1:2113606/91‑1 (MQ=255)
                                                                            tgtgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCa               <  2:2003649‑M2/78‑1 (MQ=255)
                                                                              tgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATa             <  2:1546427‑M2/80‑1 (MQ=255)
                                                                              tgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATa             >  2:1847823‑M2/12‑91 (MQ=255)
                                                                              tgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTCATGTTTGCATa             >  2:5854449‑M2/12‑91 (MQ=255)
                                                                              tgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATGTAAACATCCAATTATGTTTATCTACTGATGTTTGCATa             >  1:4853360‑M2/12‑91 (MQ=255)
                                                                               gttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATAc            >  1:4220085‑M2/11‑91 (MQ=255)
                                                                                ttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATAcc           <  1:1436088‑M2/82‑1 (MQ=255)
                                                                                  ggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCta         <  2:3344819‑M2/84‑1 (MQ=255)
                                                                                   gcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCtat        <  1:1625661‑M2/85‑1 (MQ=255)
                                                                                    cttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCtata       >  1:4070675‑M2/6‑91 (MQ=255)
                                                                                     ttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATaa      <  2:1958633‑M2/87‑1 (MQ=255)
                                                                                      tttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATAcc           >  1:3902507‑M2/4‑85 (MQ=255)
                                                                                       ttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAAc    >  1:1780869‑M2/3‑91 (MQ=255)
                                                                                       ttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAAc    <  2:3970502‑M2/89‑1 (MQ=255)
                                                                                         atttatATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATTCCTATAAACat  >  2:5859849/1‑91 (MQ=255)
                                                                                         atttatATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACat  <  1:1573279/91‑1 (MQ=255)
                                                                                         atttatATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACat  >  2:4012493/1‑91 (MQ=255)
                                                                                         atttatATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACat  <  2:2355541/91‑1 (MQ=255)
                                                                                         |                                                                                          
TAAATTGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACAT  >  USA300TCH1516_ALE/2256354‑2256533

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.