BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	133002 =	303 (1.010)	16 (0.060)	10/152	NT	5.2%	coding (118/996 nt)	yfiZ_1	putative siderophore transport system permease protein YfiZ
*	?	USA300TCH1516_ALE	133036 =	298 (1.050)	16 (0.060)	10/152	NT	5.2%	coding (84/996 nt)	yfiZ_1	putative siderophore transport system permease protein YfiZ

Only 100 of 401 total aligned reads displayed.

CAGCACCAGTCAATAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAA  >  USA300TCH1516_ALE/132912‑133091

tttacgatgctacttaaaccaaaataccaaatcgttattgctggtttatgtcttgcaatagtagctatcttaagtttaatgattggaaata                                                                                           <  2:1123253‑M1/1‑1 (MQ=255)

tttacgatgctacttaaaccaaaataccaaatcgttattgctggtttatgtcttgcaatagtagctatcttaagtttaatgattggaaata                                                                                           >  1:5666634‑M1/91‑91 (MQ=255)

tttacgatgctacttaaaccaaaataccaaatcgttattgctggtttatgtcttgcaatagtagctatcttaagtttaatgattggaaata                                                                                           <  2:3271828‑M1/1‑1 (MQ=255)

  gcaCCAGTCAATAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACg                                                                                         >  2:5045499/1‑91 (MQ=255)

   caCCAGTCAATAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGc                                                                                        <  1:5028338/91‑1 (MQ=255)

   caCCAGTCAATAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGc                                                                                        <  2:2057674/91‑1 (MQ=255)

   caCCAGTCAATAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGc                                                                                        >  1:4686774/1‑91 (MQ=255)

   caCCAGTCAATAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGc                                                                                        <  1:3026917/91‑1 (MQ=255)

   acgatgctacttaaaccaaaataccaaatcgttattgctggtttatgtcttgcaatagtagctatcttaagtttaatgattggaaatACGc                                                                                        <  1:1560615‑M1/4‑1 (MQ=255)

   acgatgctacttaaaccaaaataccaaatcgttattgctggtttatgtcttgcaatagtagctatcttaagtttaatgattggaaatACGc                                                                                        >  2:3709992‑M1/88‑91 (MQ=255)

     ccAGTCAATAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCt                                                                                      <  1:2327020/91‑1 (MQ=255)

      cAGTCAATAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTg                                                                                     <  1:877060/91‑1 (MQ=255)

       aGTCAATAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGt                                                                                    >  1:2573823/1‑91 (MQ=255)

         tCAATAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTAt                                                                                  <  2:3994179/91‑1 (MQ=255)

          cAATAACGCAATGATTGTTCTCGACGCCCGTGCACTAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATc                                                                                 >  2:5656735/1‑91 (MQ=255)

          cAATAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATc                                                                                 <  2:1415949/91‑1 (MQ=255)

           aaTAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCa                                                                                <  1:433589/91‑1 (MQ=255)

           aaTAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCa                                                                                <  2:2460831/91‑1 (MQ=255)

            aTAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCAc                                                                               >  2:1879495/1‑91 (MQ=255)

              aaCGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCAcc                                                                              >  1:4799985/1‑90 (MQ=255)

              aaCGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCAcc                                                                              <  2:4799637/90‑1 (MQ=255)

               aCGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGt                                                                            >  2:3211651/1‑91 (MQ=255)

                cGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTa                                                                           >  2:3373202/1‑91 (MQ=255)

                 gCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTAc                                                                          >  1:2290873/1‑91 (MQ=255)

                  cAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTAcc                                                                         <  1:3644570/91‑1 (MQ=255)

                    aTGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTg                                                                       <  1:3318752/91‑1 (MQ=255)

                    aTGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTg                                                                       <  1:5535316/91‑1 (MQ=255)

                    aTGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTg                                                                       >  1:453303/1‑91 (MQ=255)

                    aTGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTg                                                                       >  2:4369257/1‑91 (MQ=255)

                     tGATTGTTCTCGACGCCCGTGCACCACTGACAACATCATGTAAATCGTTTTCACTCTCAAAGTTGAATAACGCCTGTATCACCGTACCTgg                                                                      >  2:1193845/1‑91 (MQ=255)

                      gATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGt                                                                     >  2:2232764/1‑91 (MQ=255)

                      aataccaaatcgttattgctggtttatgtcttgcaatagtagctatcttaagtttaatgattggaaatACGCCTGTATCACCGTACCTGGt                                                                     >  2:23236‑M1/69‑91 (MQ=255)

                      aataccaaatcgttattgctggtttatgtcttgcaatagtagctatcttaagtttaatgattggaaatACGCCTGTATCACCGTACCTGGt                                                                     >  1:4280523‑M1/69‑91 (MQ=255)

                      aataccaaatcgttattgctggtttatgtcttgcaatagtagctatcttaagtttaatgattggaaatACGCCTGTATCACCGTACCTGGt                                                                     >  2:2714329‑M1/69‑91 (MQ=255)

                         tGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGac                                                                  >  1:801389/1‑91 (MQ=255)

                          gTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGaca                                                                 >  1:3476533/1‑91 (MQ=255)

                          gTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGaca                                                                 >  2:1371141/1‑91 (MQ=255)

                          gTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGaca                                                                 >  1:1420577/1‑91 (MQ=255)

                            tctcGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGAcaca                                                               >  1:839282/1‑91 (MQ=255)

                            aaatcgttattgctggtttatgtcttgcaatagtagctatcttaagtttaatgattggaaatACGCCTGTATCACCGTACCTGGTGAcaca                                                               >  1:673733‑M1/63‑91 (MQ=255)

                                   gCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTAt                                                        >  1:2746207/1‑91 (MQ=255)

                                    cccGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTAtt                                                       <  1:24234/91‑1 (MQ=255)

                                     ccGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTAttt                                                      <  2:1556969/91‑1 (MQ=255)

                                      cGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTc                                                     <  1:3194796/91‑1 (MQ=255)

                                      cGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTc                                                     >  1:5626938/1‑91 (MQ=255)

                                       gTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTcc                                                    >  2:1855207/1‑91 (MQ=255)

                                       gTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTcc                                                    >  1:3145848/1‑91 (MQ=255)

                                        tGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCa                                                   <  2:2867517/91‑1 (MQ=255)

                                         gCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCaa                                                  <  1:996987/91‑1 (MQ=255)

                                         gCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCaa                                                  >  1:3531574/1‑91 (MQ=255)

                                          cACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAAt                                                 <  2:2207399/91‑1 (MQ=255)

                                           aCCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATc                                                <  2:3453661/91‑1 (MQ=255)

                                            ccAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCa                                               >  2:2944691/1‑91 (MQ=255)

                                            ccAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCa                                               >  1:1053410/1‑91 (MQ=255)

                                            ccAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCa                                               >  1:5419675/1‑91 (MQ=255)

                                            ccAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCa                                               >  1:120959/1‑91 (MQ=255)

                                            ccAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCa                                               >  1:4425049/1‑91 (MQ=255)

                                             cAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCAt                                              <  2:178512/91‑1 (MQ=255)

                                              aGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCAtt                                             <  1:1371141/91‑1 (MQ=255)

                                               gTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTa                                            >  1:5269142/1‑91 (MQ=255)

                                               gTGACAACATAATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTa                                            >  2:4884840/1‑91 (MQ=255)

                                                tGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTaa                                           <  2:754885/91‑1 (MQ=255)

                                                  acaacaTCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAAc                                         <  2:3132162/91‑1 (MQ=255)

                                                    aacaTCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACtt                                       >  2:5425768/1‑91 (MQ=255)

                                                     acaTCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTa                                      <  2:4110418/91‑1 (MQ=255)

                                                     acaTCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTa                                      <  1:1002928/91‑1 (MQ=255)

                                                      catcatGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTaa                                     >  1:5514549/1‑91 (MQ=255)

                                                      catcatGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTaa                                     >  2:4707224/1‑91 (MQ=255)

                                                      catcagGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTAACACCGTACCTGGTGACACGAGCGTATTTCTAATCATTAAACTTaa                                     >  2:5753813/1‑91 (MQ=255)

                                                        tcatGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGa                                   >  1:2678492/1‑91 (MQ=255)

                                                        tcatGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGa                                   <  1:1631825/91‑1 (MQ=255)

                                                               aaTCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGctac                            >  2:2135937/1‑91 (MQ=255)

                                                                aTCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGctact                           <  1:1969328/91‑1 (MQ=255)

                                                                 tCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCa                                               >  1:4751939/1‑70 (MQ=255)

                                                                 tCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCa                                               <  2:4751939/70‑1 (MQ=255)

                                                                    ttttCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTg                       >  1:3946115/1‑91 (MQ=255)

                                                                     tttCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGc                      >  2:5332162/1‑91 (MQ=255)

                                                                      ttCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCa                     >  1:3781395/1‑91 (MQ=255)

                                                                      ttCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCa                     <  2:3622741/91‑1 (MQ=255)

                                                                      ttCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCa                     <  2:4212469/91‑1 (MQ=255)

                                                                      ttCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCa                     >  1:1479724/1‑91 (MQ=255)

                                                                       tCACTATCAATGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTGCAATCATTAAACTTAAGATAGCTACTATTGCaa                    <  1:5835431/91‑1 (MQ=255)

                                                                       tCACTATCAAAGTTGGATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCaa                    <  2:4512379/91‑1 (MQ=255)

                                                                       tCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCaa                    <  1:5866624/91‑1 (MQ=255)

                                                                       tCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCaa                    <  1:2105309/91‑1 (MQ=255)

                                                                          cTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGAc                 >  2:3074532/1‑91 (MQ=255)

                                                                            aTCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACAt               <  2:596911/91‑1 (MQ=255)

                                                                                aaGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAAc           >  1:1676092/1‑91 (MQ=255)

                                                                                aaGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAAc           <  2:5247147/91‑1 (MQ=255)

                                                                                 aGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAAcc          >  1:2238705/1‑91 (MQ=255)

                                                                                    tGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGc       <  1:1768099/91‑1 (MQ=255)

                                                                                    tGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGc       >  1:4922659/1‑91 (MQ=255)

                                                                                    tGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGc       <  1:2874409/91‑1 (MQ=255)

                                                                                     gAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCa      >  2:3814920/1‑91 (MQ=255)

                                                                                       aTAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAAt    <  1:2794748/91‑1 (MQ=255)

                                                                                       aTAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAAt    <  1:5131428/91‑1 (MQ=255)

                                                                                       aTAACGCCGTTATCACCGAACCTGGTGACACAAGCGTATTTCCAATCATTAGACCTAAGATAGCTACTATTGCAAGACAGAAACCAGCAAt    <  2:2643895/91‑1 (MQ=255)

                                                                                        tAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATa   >  2:2794129/1‑91 (MQ=255)

                                                                                        tAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATa   >  2:4619143/1‑91 (MQ=255)

                                                                                        tAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATa   >  1:1500851/1‑91 (MQ=255)

CAGCACCAGTCAATAACGCAATGATTGTTCTCGACGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAA  >  USA300TCH1516_ALE/132912‑133091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.