BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	133002 =	303 (1.010)	16 (0.060)	10/152	NT	5.2%	coding (118/996 nt)	yfiZ_1	putative siderophore transport system permease protein YfiZ
*	?	USA300TCH1516_ALE	133036 =	298 (1.050)	16 (0.060)	10/152	NT	5.2%	coding (84/996 nt)	yfiZ_1	putative siderophore transport system permease protein YfiZ

Only 100 of 390 total aligned reads displayed.

CGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGCATCGTAAAA  >  USA300TCH1516_ALE/132946‑133126

 gCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTAt                                                                                           <  2:3211326/91‑1 (MQ=255)

 gCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTAt                                                                                           >  1:4322791/1‑91 (MQ=255)

    cGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTc                                                                                        <  1:3194796/91‑1 (MQ=255)

    cGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTc                                                                                        >  2:2201032/1‑91 (MQ=255)

     gTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTcc                                                                                       >  1:3145848/1‑91 (MQ=255)

     gTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTcc                                                                                       >  1:2320194/1‑91 (MQ=255)

     gTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTcc                                                                                       >  2:1855207/1‑91 (MQ=255)

      tGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCa                                                                                      <  2:4832087/91‑1 (MQ=255)

      tGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCa                                                                                      <  1:835062/91‑1 (MQ=255)

       gCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCaa                                                                                     <  1:996987/91‑1 (MQ=255)

         aCCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATc                                                                                   <  1:379331/91‑1 (MQ=255)

          ccAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCa                                                                                  >  1:5419675/1‑91 (MQ=255)

          ccAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCa                                                                                  >  1:45720/1‑91 (MQ=255)

          ccAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCa                                                                                  >  1:120959/1‑91 (MQ=255)

          ccAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCa                                                                                  >  1:1053410/1‑91 (MQ=255)

           cAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCAt                                                                                 <  1:2126522/91‑1 (MQ=255)

                acaacaTCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAAc                                                                            >  2:1584678/1‑91 (MQ=255)

                acaacaTCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAAc                                                                            >  2:5360798/1‑91 (MQ=255)

                 caacaTCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACt                                                                           <  1:795897/91‑1 (MQ=255)

                  aacaTCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACtt                                                                          >  1:2020466/1‑91 (MQ=255)

                   acaTCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTa                                                                         <  1:1002928/91‑1 (MQ=255)

                   acaTCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTa                                                                         <  2:4110418/91‑1 (MQ=255)

                    catcatGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTaa                                                                        >  1:5514549/1‑91 (MQ=255)

                      tcatGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGa                                                                      >  1:2678492/1‑91 (MQ=255)

                      tcatGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGa                                                                      <  2:2009258/91‑1 (MQ=255)

                      tcatGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGa                                                                      <  1:1631825/91‑1 (MQ=255)

                      taatGTAAATCGTTTTCACTATCAATGTTGAATAACGCCTGTATCATCGTACCTGCTGACACAAGCGTATATCCAATCATTAAACTTAGGa                                                                      >  2:4896778/3‑91 (MQ=255)

                       catGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGAt                                                                     >  1:2482254/1‑91 (MQ=255)

                         agtagctatcttaagtttaatgattggaaatacgcttgtgtcaccaggtacggtgatacaggcgtATTTCCAATCATTAAACTTAAGATAg                                                                   >  1:2177530‑M2/66‑91 (MQ=255)

                          gTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGc                                                                  <  2:4700937/91‑1 (MQ=255)

                             aaTCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGctac                                                               >  2:3861226/1‑91 (MQ=255)

                              tttgTTGTCACTATCAAGGTTGAATAGCGCCTGTATCACCGTACCTGGTGACACAAGCGTGTTTACAATCAATAAGCTTAAGAGAGctacg                                                              <  2:1207534/88‑2 (MQ=255)

                              aTCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGctcct                                                              <  2:5463582/91‑1 (MQ=255)

                               tCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCa                                                                                  <  2:4751939/70‑1 (MQ=255)

                               tCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCa                                                                                  >  1:4751939/1‑70 (MQ=255)

                                 gTTTTCACTATCAAAGTTGAATAACGCTTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTAtt                                                           <  2:2208442/91‑1 (MQ=255)

                                 gTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTAtt                                                           >  1:5595212/1‑91 (MQ=255)

                                 gTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTAtt                                                           >  2:2337379/1‑91 (MQ=255)

                                   tttCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGc                                                         >  1:3515584/1‑91 (MQ=255)

                                   tttCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGc                                                         <  1:5305128/91‑1 (MQ=255)

                                      cACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAg                                                      <  2:3594637/91‑1 (MQ=255)

                                      cACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAg                                                      >  1:1437015/1‑91 (MQ=255)

                                       aCTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGa                                                     <  2:2316907/91‑1 (MQ=255)

                                       aCTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGa                                                     <  2:718772/91‑1 (MQ=255)

                                          aTCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACAt                                                  <  2:5039630/91‑1 (MQ=255)

                                           aatgaatggaaatACGCCTGTATCACCGTACCTGATGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATa                                                 >  2:2782905‑M1/14‑91 (MQ=255)

                                            atgattggaaatacgcttgtgtcaccaggtacggtgatacaggcgtATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATaa                                                >  2:568278‑M2/47‑91 (MQ=255)

                                              aaGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAAc                                              >  1:1676092/1‑91 (MQ=255)

                                                 tggaaatacgcttgtgtcaccaggtacggtgatacaggcgtATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAg                                           >  2:4599280‑M2/42‑91 (MQ=255)

                                                  tGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGc                                          <  1:2874409/91‑1 (MQ=255)

                                                  tGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGc                                          <  1:1768099/91‑1 (MQ=255)

                                                  tGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGc                                          <  1:2273352/91‑1 (MQ=255)

                                                  tGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGc                                          >  1:4922659/1‑91 (MQ=255)

                                                   gAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCCATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCa                                         >  1:4412045/1‑91 (MQ=255)

                                                   gAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCa                                         <  1:1482916/91‑1 (MQ=255)

                                                    aaTAACGCGTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTACGATAGCTACTATTGCAAGACATAAACCAGCaa                                        >  2:819056/1‑91 (MQ=255)

                                                    aaTAACGCCTGTATCACCGTACCTGGTGACACAGGCGTATTACCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCaa                                        >  1:5812227/1‑91 (MQ=255)

                                                     aTAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAAt                                       >  1:4027816/1‑91 (MQ=255)

                                                      tAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATa                                      <  1:1377927/91‑1 (MQ=255)

                                                         CGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACg                                   >  2:1277197‑M1/1‑91 (MQ=255)

                                                          GCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGa                                  <  1:3399127‑M1/91‑1 (MQ=255)

                                                          GCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGa                                  <  2:3108181‑M1/91‑1 (MQ=255)

                                                           CCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGTTAGCTACTATTGCAAGACATAAACCAGCAATAACGAt                                 >  1:4491995‑M1/1‑91 (MQ=255)

                                                            cTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGAtt                                >  2:3685870/1‑91 (MQ=255)

                                                            cTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGAtt                                <  1:3621523/91‑1 (MQ=255)

                                                            cTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGAtt                                <  2:1519267/91‑1 (MQ=255)

                                                             tGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGAttt                               <  1:5088155/91‑1 (MQ=255)

                                                             tGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGAttt                               >  2:4447833/1‑91 (MQ=255)

                                                             tGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGAttt                               <  2:5770713/91‑1 (MQ=255)

                                                              gTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTg                              >  1:3908464/1‑91 (MQ=255)

                                                               tATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTgg                             <  2:2573823/91‑1 (MQ=255)

                                                               tATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTgg                             <  1:3565899/91‑1 (MQ=255)

                                                                aTCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGt                            >  1:1846261/1‑91 (MQ=255)

                                                                aTCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGt                            <  2:2968932/91‑1 (MQ=255)

                                                                  cACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTAt                          <  1:1892159/91‑1 (MQ=255)

                                                                   aCCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTAtt                         <  1:3303254/91‑1 (MQ=255)

                                                                   aCCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTAtt                         <  1:602713/91‑1 (MQ=255)

                                                                        aCCTGGTGACACAAGCGTATTTCCAATCCTTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGt                    >  2:4274086/1‑91 (MQ=255)

                                                                        aCCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGt                    >  2:2417908/1‑91 (MQ=255)

                                                                        aCCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGt                    >  2:5300653/1‑91 (MQ=255)

                                                                        aCCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGt                    >  2:5193584/1‑91 (MQ=255)

                                                                        aCCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGt                    <  1:2750860/91‑1 (MQ=255)

                                                                         ccTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTCGGTATTTTCGtt                   >  2:1685012/1‑91 (MQ=255)

                                                                             gTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATATGGTATTTTGGTTTAAg               >  2:5734097/1‑91 (MQ=255)

                                                                              tGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTACTTTGGTTTAAGt              >  2:3751681/1‑91 (MQ=255)

                                                                               gACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCATCAATAACGATTTGGTACTTTGGTTTAAGTa             <  1:4660145/91‑1 (MQ=255)

                                                                                 cacaAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGc           <  2:4196870/91‑1 (MQ=255)

                                                                                 cacaAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGc           <  1:5656735/91‑1 (MQ=255)

                                                                                   caAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGCAt         >  2:3007239/1‑91 (MQ=255)

                                                                                    aaGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGCATc        <  1:3645956/91‑1 (MQ=255)

                                                                                     aGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGCATCg       >  1:653754/1‑91 (MQ=255)

                                                                                      gcgtATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGCATCGt      <  2:4027816‑M2/87‑1 (MQ=255)

                                                                                      gcgtATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGCATCGt      <  1:4116026‑M2/87‑1 (MQ=255)

                                                                                      gcgtATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGCATCGt      >  1:2992202‑M2/5‑91 (MQ=255)

                                                                                      gcgtATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGCATCGt      <  1:1560615‑M2/87‑1 (MQ=255)

                                                                                       cgtATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGCATCGTa     <  2:2650319‑M2/88‑1 (MQ=255)

                                                                                        gtATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGCATCGTaa    >  2:2860421‑M2/3‑91 (MQ=255)

                                                                                         tATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGCATCGTaaa   >  2:3425981‑M2/2‑91 (MQ=255)

                                                                                         tATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGCATCGTaaa   <  2:1123253‑M2/90‑1 (MQ=255)

                                                                                          aTTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGCATCGTaaaa  >  2:3269915/1‑91 (MQ=255)

CGCCCGTGCACCAGTGACAACATCATGTAAATCGTTTTCACTATCAAAGTTGAATAACGCCTGTATCACCGTACCTGGTGACACAAGCGTATTTCCAATCATTAAACTTAAGATAGCTACTATTGCAAGACATAAACCAGCAATAACGATTTGGTATTTTGGTTTAAGTAGCATCGTAAAA  >  USA300TCH1516_ALE/132946‑133126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.