| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 42564 = | 359 (1.200) | 17 (0.080) +TACATTATAAAATACATATC |
10/120 | NT | 6.8% | coding (1402/1524 nt) | USA300TCH1516_00035 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 2479065 | 269 (0.900) | intergenic (+21/+119) | USA300HOU_RS12765/hrtA_2 | hypothetical protein/Putative hemin import ATP‑binding protein HrtA | |||||
TAATGGCACTTAATATAAGAAAAGTAGTAGCTCAACGAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/42605‑42564‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAAGCTGATTTCTATTAATTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGCATTCATATAGCTT < USA300TCH1516_ALE/2479065‑2478976 |||||||||||||||||||| TAATGGCACTTAATATAAGGAAAATAGAAGCTCAACGAGCTGTACATTATAAAATACAAATAAAAAAAGCTGATTTCTATTAATTATTTGA < 2:1221532/91‑1 AATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGAT < 2:3179890/91‑1 ATGGCACTTAATATAAGGAAAATAGCAGCTCAACGGGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATg < 1:1119726/91‑2 ATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATA < 2:113160/91‑1 ATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATAAAAAAAAAAAAAGCTGATTTCTATTAATTATTTGATA < 2:4957136/91‑1 GGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGA < 1:2381638/91‑1 caaTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAA < 1:3420650/88‑1 aaTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAAT < 1:5081079/89‑1 ACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTATTTATTTGATAGAAAT < 2:1616201/91‑1 ACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTATTTATTTGATAGAAAT < 2:1680208/91‑1 aTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAATC < 2:3066913/90‑1 TAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAATAGCTGATTTCTATTAATTATTTGATAGAAATCAG < 2:3486064/91‑1 TAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAATAGCTGATTTCTATTAATTATTTGATAGAAATCAG < 2:3486230/91‑1 TAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAATCAG < 1:1145696/91‑1 AATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAATCAGC < 1:3824192/91‑1 ATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAATCAGCT < 1:1560494/91‑1 aaaaTAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAATCAGCTTTTTTGAT < 2:3663933/87‑1 CAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGCATTCATATAGCTT > 1:4678370/1‑91 |||||||||||||||||||| TAATGGCACTTAATATAAGAAAAGTAGTAGCTCAACGAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/42605‑42564‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAAGCTGATTTCTATTAATTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTTGCATTCATATAGCTT < USA300TCH1516_ALE/2479065‑2478976 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |